Wall clock time and date at job start Tue Mar 31 2020 12:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47258 * 2 1 4 4 H 1.08989 * 109.46878 * 305.00332 * 3 2 1 5 5 C 1.52994 * 109.47330 * 184.99869 * 3 2 1 6 6 O 1.42902 * 109.47149 * 305.00310 * 5 3 2 7 7 N 1.46505 * 109.46805 * 65.00025 * 3 2 1 8 8 C 1.34777 * 119.99553 * 205.00234 * 7 3 2 9 9 O 1.21552 * 120.00298 * 0.02562 * 8 7 3 10 10 C 1.47845 * 120.00012 * 179.97438 * 8 7 3 11 11 C 1.39571 * 120.14594 * 179.97438 * 10 8 7 12 12 C 1.37956 * 119.85308 * 180.02562 * 11 10 8 13 13 C 1.38361 * 120.14496 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.85111 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47238 * 299.99923 * 14 13 12 16 16 C 1.52997 * 109.47103 * 60.00116 * 14 13 12 17 17 C 1.52999 * 109.46573 * 179.97438 * 14 13 12 18 18 C 1.50706 * 109.46953 * 179.97438 * 17 14 13 19 19 H 1.07999 * 119.99816 * 0.02562 * 18 17 14 20 20 C 1.37876 * 120.00344 * 180.02562 * 18 17 14 21 21 N 1.31514 * 120.00355 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99771 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46889 * 89.99924 * 22 20 18 24 24 H 1.48498 * 109.47131 * 210.00227 * 22 20 18 25 25 H 1.48500 * 109.47362 * 330.00383 * 22 20 18 26 26 C 1.38356 * 120.29417 * 0.23278 * 13 12 11 27 27 C 1.37960 * 120.14290 * 359.48864 * 26 13 12 28 28 H 1.09000 * 109.47151 * 59.99904 * 1 2 3 29 29 H 1.09002 * 109.46946 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46909 * 299.99721 * 1 2 3 31 31 H 1.08998 * 109.47441 * 239.99666 * 2 1 3 32 32 H 1.09004 * 109.46925 * 119.99646 * 2 1 3 33 33 H 1.09001 * 109.47210 * 64.99683 * 5 3 2 34 34 H 1.08996 * 109.47178 * 185.00112 * 5 3 2 35 35 H 0.96700 * 114.00106 * 180.02562 * 6 5 3 36 36 H 0.96997 * 120.00523 * 24.99694 * 7 3 2 37 37 H 1.08003 * 120.07690 * 0.02562 * 11 10 8 38 38 H 1.08001 * 119.92660 * 180.02562 * 12 11 10 39 39 H 1.09001 * 109.46832 * 60.00314 * 15 14 13 40 40 H 1.09002 * 109.47153 * 180.02562 * 15 14 13 41 41 H 1.08996 * 109.46952 * 300.00294 * 15 14 13 42 42 H 1.09000 * 109.47140 * 59.99953 * 16 14 13 43 43 H 1.09001 * 109.47230 * 179.97438 * 16 14 13 44 44 H 1.09001 * 109.47375 * 299.99936 * 16 14 13 45 45 H 1.09000 * 109.47486 * 299.99934 * 17 14 13 46 46 H 1.09001 * 109.47362 * 60.00657 * 17 14 13 47 47 H 0.96991 * 119.99886 * 179.97438 * 21 20 18 48 48 H 1.07994 * 119.92715 * 179.74290 * 26 13 12 49 49 H 1.07998 * 120.07313 * 180.24959 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5648 1.4444 -0.1257 6 8 4.1293 0.6404 0.9121 7 7 1.6525 2.0975 1.2519 8 6 1.5256 3.4384 1.2996 9 8 1.7323 4.1043 0.3039 10 6 1.1339 4.0994 2.5627 11 6 1.0022 5.4879 2.6157 12 6 0.6369 6.0984 3.7977 13 6 0.4018 5.3375 4.9291 14 6 0.0037 6.0114 6.2169 15 6 1.1045 6.9839 6.6452 16 6 -1.3027 6.7798 6.0078 17 6 -0.1955 4.9544 7.3051 18 6 -0.5930 5.6283 8.5931 19 1 -0.6939 6.7029 8.6316 20 6 -0.8279 4.8730 9.7224 21 7 -1.1753 5.4610 10.8463 22 14 -0.6541 3.0143 9.6557 23 1 0.7412 2.6352 9.9945 24 1 -1.5863 2.3946 10.6315 25 1 -0.9789 2.5355 8.2881 26 6 0.5358 3.9612 4.8847 27 6 0.8950 3.3376 3.7077 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8499 1.0377 -1.0960 34 1 3.9355 2.4655 -0.0366 35 1 5.0951 0.5963 0.8942 36 1 1.4871 1.5661 2.0463 37 1 1.1858 6.0831 1.7334 38 1 0.5342 7.1727 3.8399 39 1 1.2459 7.7368 5.8698 40 1 0.8167 7.4710 7.5769 41 1 2.0351 6.4364 6.7942 42 1 -2.0869 6.0870 5.7027 43 1 -1.5909 7.2669 6.9393 44 1 -1.1612 7.5327 5.2324 45 1 -0.9799 4.2619 6.9997 46 1 0.7350 4.4067 7.4543 47 1 -1.3409 4.9296 11.6406 48 1 0.3549 3.3733 5.7725 49 1 0.9953 2.2629 3.6733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221380577.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:45 Heat of formation + Delta-G solvation = -84.987345 kcal Electronic energy + Delta-G solvation = -26999.707398 eV Core-core repulsion = 23311.790872 eV Total energy + Delta-G solvation = -3687.916526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.40994 -39.15533 -37.57501 -35.92038 -35.43282 -32.77068 -32.32384 -30.86969 -30.14587 -28.71226 -27.76385 -26.49222 -24.52240 -23.84377 -22.95843 -21.66431 -21.14748 -20.50891 -18.45858 -18.05524 -17.71876 -16.89022 -16.41735 -15.53913 -15.15313 -14.88208 -14.72064 -14.52886 -14.32234 -14.18216 -13.88958 -13.57430 -13.52813 -13.28621 -12.93269 -12.89088 -12.63926 -12.55582 -12.30278 -12.07353 -11.71310 -11.46714 -11.37787 -11.22616 -11.17330 -11.14037 -10.82713 -10.65062 -10.54692 -10.35610 -10.08171 -9.89400 -9.79011 -9.46165 -9.26860 -8.99740 -8.79044 -8.55681 -8.43400 -6.05996 -4.03181 1.02992 1.58849 2.93645 3.01070 3.27642 3.36043 3.36646 3.94265 4.06064 4.34621 4.42344 4.65067 4.74476 4.79681 4.93664 5.01998 5.12351 5.14787 5.20016 5.27259 5.31330 5.38005 5.50209 5.56708 5.62147 5.63764 5.80138 5.81323 5.85762 5.88244 5.96584 6.18536 6.23635 6.30375 6.32226 6.45947 6.46707 6.56728 6.60791 6.73249 6.99172 7.00945 7.05273 7.11458 7.22025 7.26713 7.32979 7.40349 7.77143 8.13627 8.51610 8.98623 9.56445 11.06967 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.003027 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.171520 B = 9247.217393 C =10221.193048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.126 4.126 3 C 0.148 3.852 4 H 0.100 0.900 5 C 0.062 3.938 6 O -0.568 6.568 7 N -0.716 5.716 8 C 0.566 3.434 9 O -0.549 6.549 10 C -0.159 4.159 11 C -0.060 4.060 12 C -0.130 4.130 13 C -0.022 4.022 14 C -0.023 4.023 15 C -0.125 4.125 16 C -0.125 4.125 17 C -0.005 4.005 18 C -0.512 4.512 19 H 0.079 0.921 20 C 0.067 3.933 21 N -0.903 5.903 22 Si 0.874 3.126 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.266 1.266 26 C -0.128 4.128 27 C -0.084 4.084 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.378 0.622 36 H 0.403 0.597 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.037 0.963 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.074 0.926 44 H 0.037 0.963 45 H 0.019 0.981 46 H 0.014 0.986 47 H 0.262 0.738 48 H 0.136 0.864 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.169 -8.808 -21.656 24.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.164 4.164 3 C 0.043 3.957 4 H 0.118 0.882 5 C -0.017 4.017 6 O -0.374 6.374 7 N -0.368 5.368 8 C 0.355 3.645 9 O -0.428 6.428 10 C -0.162 4.162 11 C -0.079 4.079 12 C -0.148 4.148 13 C -0.022 4.022 14 C -0.023 4.023 15 C -0.182 4.182 16 C -0.182 4.182 17 C -0.042 4.042 18 C -0.550 4.550 19 H 0.097 0.903 20 C -0.134 4.134 21 N -0.542 5.542 22 Si 0.701 3.299 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.191 1.191 26 C -0.146 4.146 27 C -0.103 4.103 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.225 0.775 36 H 0.239 0.761 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.056 0.944 45 H 0.037 0.963 46 H 0.032 0.968 47 H 0.072 0.928 48 H 0.154 0.846 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.630 -8.464 -22.045 24.527 hybrid contribution 0.647 -1.279 0.365 1.479 sum 7.277 -9.744 -21.680 24.858 Atomic orbital electron populations 1.21809 0.95279 1.01836 1.02330 1.21711 0.96213 0.94882 1.03610 1.21103 0.92370 0.94018 0.88175 0.88221 1.22655 0.94249 0.94671 0.90113 1.86461 1.25339 1.72088 1.53470 1.45893 1.70560 1.06844 1.13552 1.18415 0.76082 0.81772 0.88232 1.90724 1.51392 1.64303 1.36388 1.19710 1.08561 0.94647 0.93294 1.21144 0.95676 0.93030 0.98011 1.21040 1.01282 1.00278 0.92157 1.20590 0.92390 0.93518 0.95693 1.19578 0.95518 0.96531 0.90706 1.21777 0.97407 0.97734 1.01316 1.21773 0.95955 0.98850 1.01632 1.19737 0.96195 0.94159 0.94115 1.21127 1.45923 0.95597 0.92335 0.90342 1.25001 0.94784 0.98168 0.95459 1.69898 1.47757 1.35695 1.00896 0.86880 0.78157 0.86697 0.78154 1.20342 1.21466 1.19073 1.21329 1.00198 0.94983 0.98057 1.21232 0.97710 0.98962 0.92388 0.92649 0.92412 0.92394 0.90627 0.90425 0.92910 0.92968 0.77500 0.76112 0.85304 0.85515 0.94404 0.90668 0.93459 0.93455 0.90671 0.94401 0.96294 0.96757 0.92784 0.84595 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.80 37.16 0.36 -0.78 16 2 C -0.13 -0.92 5.19 -26.73 -0.14 -1.06 16 3 C 0.15 1.35 2.37 -67.93 -0.16 1.19 16 4 H 0.10 0.99 7.58 -51.93 -0.39 0.60 16 5 C 0.06 0.52 6.85 37.15 0.25 0.78 16 6 O -0.57 -4.69 12.83 -35.23 -0.45 -5.15 16 7 N -0.72 -7.66 4.43 -54.75 -0.24 -7.90 16 8 C 0.57 7.77 7.74 -12.33 -0.10 7.68 16 9 O -0.55 -8.94 16.01 5.32 0.09 -8.85 16 10 C -0.16 -2.26 5.87 -104.97 -0.62 -2.87 16 11 C -0.06 -0.86 9.60 -39.19 -0.38 -1.24 16 12 C -0.13 -1.92 8.69 -39.64 -0.34 -2.26 16 13 C -0.02 -0.36 4.77 -104.53 -0.50 -0.86 16 14 C -0.02 -0.43 0.61 -155.66 -0.09 -0.53 16 15 C -0.13 -2.24 8.03 37.16 0.30 -1.94 16 16 C -0.12 -2.23 8.03 37.16 0.30 -1.94 16 17 C 0.00 -0.11 1.76 -27.88 -0.05 -0.16 16 18 C -0.51 -13.55 8.20 -34.44 -0.28 -13.83 16 19 H 0.08 2.21 5.92 -52.49 -0.31 1.90 16 20 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 21 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 22 Si 0.87 20.96 27.47 -169.99 -4.67 16.29 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 26 C -0.13 -2.04 8.96 -39.64 -0.36 -2.40 16 27 C -0.08 -1.15 9.54 -39.18 -0.37 -1.52 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.47 7.75 -51.93 -0.40 0.07 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.61 7.73 -51.93 -0.40 0.21 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.38 1.67 9.12 45.56 0.42 2.09 16 36 H 0.40 3.83 6.64 -40.82 -0.27 3.56 16 37 H 0.13 1.76 7.65 -52.48 -0.40 1.36 16 38 H 0.13 1.68 7.08 -52.49 -0.37 1.31 16 39 H 0.04 0.57 7.38 -51.93 -0.38 0.19 16 40 H 0.07 1.48 6.62 -51.93 -0.34 1.14 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 1.48 6.62 -51.93 -0.34 1.14 16 44 H 0.04 0.57 7.37 -51.93 -0.38 0.19 16 45 H 0.02 0.43 6.58 -51.93 -0.34 0.09 16 46 H 0.01 0.32 6.92 -51.93 -0.36 -0.04 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.14 2.27 5.87 -52.49 -0.31 1.96 16 49 H 0.12 1.28 6.41 -52.49 -0.34 0.95 16 LS Contribution 385.45 15.07 5.81 5.81 Total: -1.00 -31.78 385.45 -8.02 -39.80 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.06 Total: 6.19 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -2.27 Total: -19.97 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.53 Total: -34.12 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.37 Total: -14.00 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.78 -8.02 -39.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221380577.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.184 kcal (2) G-P(sol) polarization free energy of solvation -31.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds