Wall clock time and date at job start Tue Mar 31 2020 12:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36015 * 116.99965 * 2 1 4 4 C 1.38707 * 120.02415 * 0.02562 * 3 2 1 5 5 C 1.38769 * 120.53755 * 180.02562 * 4 3 2 6 6 C 1.36484 * 120.58121 * 359.97438 * 5 4 3 7 7 C 1.40768 * 120.02721 * 0.02562 * 6 5 4 8 8 C 1.41179 * 120.26832 * 180.02562 * 7 6 5 9 9 H 1.08004 * 119.99599 * 154.89408 * 8 7 6 10 10 C 1.39918 * 120.00110 * 334.89547 * 8 7 6 11 11 N 1.30865 * 120.00009 * 342.26706 * 10 8 7 12 12 Si 1.86803 * 120.00088 * 162.25720 * 10 8 7 13 13 H 1.48497 * 109.47022 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46561 * 120.00282 * 12 10 8 15 15 H 1.48492 * 109.47360 * 240.00531 * 12 10 8 16 16 C 1.38885 * 120.01964 * 180.02562 * 3 2 1 17 17 O 1.35741 * 120.28514 * 359.96325 * 16 3 2 18 18 C 1.42898 * 116.99882 * 89.99348 * 17 16 3 19 19 H 1.08999 * 109.50776 * 330.00132 * 18 17 16 20 20 C 1.53123 * 109.50180 * 90.08235 * 18 17 16 21 21 C 1.53117 * 109.16005 * 177.55424 * 20 18 17 22 22 C 1.53042 * 109.31089 * 302.40258 * 21 20 18 23 23 N 1.46848 * 109.52302 * 59.15887 * 22 21 20 24 24 C 1.46895 * 111.00079 * 174.16341 * 23 22 21 25 25 C 1.52999 * 109.46851 * 299.20635 * 24 23 22 26 26 C 1.52993 * 109.47253 * 59.20707 * 24 23 22 27 27 C 1.46848 * 111.19789 * 298.26149 * 23 22 21 28 28 H 1.09005 * 109.46729 * 59.99562 * 1 2 3 29 29 H 1.08999 * 109.47324 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47453 * 300.00214 * 1 2 3 31 31 H 1.08002 * 119.72500 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.70515 * 179.72128 * 5 4 3 33 33 H 1.08007 * 119.98851 * 179.97438 * 6 5 4 34 34 H 0.97008 * 120.00507 * 179.97438 * 11 10 8 35 35 H 1.09001 * 109.51959 * 297.49734 * 20 18 17 36 36 H 1.08996 * 109.52239 * 57.68372 * 20 18 17 37 37 H 1.09001 * 109.50987 * 182.44120 * 21 20 18 38 38 H 1.09000 * 109.50246 * 62.36197 * 21 20 18 39 39 H 1.08990 * 109.46312 * 299.14399 * 22 21 20 40 40 H 1.08997 * 109.46256 * 179.17070 * 22 21 20 41 41 H 1.09005 * 109.47023 * 179.20827 * 24 23 22 42 42 H 1.09000 * 109.47460 * 60.00606 * 25 24 23 43 43 H 1.09004 * 109.46749 * 180.02562 * 25 24 23 44 44 H 1.08996 * 109.47566 * 299.99976 * 25 24 23 45 45 H 1.08999 * 109.47166 * 60.00245 * 26 24 23 46 46 H 1.09004 * 109.47130 * 179.97438 * 26 24 23 47 47 H 1.08999 * 109.47527 * 300.00314 * 26 24 23 48 48 H 1.09005 * 109.45888 * 301.72448 * 27 23 22 49 49 H 1.09003 * 109.46568 * 181.76171 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2915 2.3755 0.0005 5 6 1.9104 3.6176 0.0000 6 6 3.2717 3.7150 -0.0005 7 6 4.0614 2.5497 -0.0011 8 6 5.4700 2.6446 -0.0011 9 1 6.0656 1.8356 0.3954 10 6 6.0942 3.7866 -0.5147 11 7 5.4304 4.5996 -1.2963 12 14 7.8752 4.1509 -0.0845 13 1 8.3966 3.0852 0.8086 14 1 8.6857 4.1946 -1.3280 15 1 7.9590 5.4621 0.6075 16 6 3.4334 1.2851 -0.0005 17 8 4.1787 0.1506 -0.0003 18 6 4.5343 -0.3922 -1.2734 19 1 3.7601 -0.1501 -2.0015 20 6 5.8689 0.2046 -1.7289 21 6 6.2725 -0.4273 -3.0639 22 6 6.3599 -1.9463 -2.8990 23 7 5.0582 -2.4683 -2.4635 24 6 5.0651 -3.9368 -2.4280 25 6 5.3489 -4.4794 -3.8301 26 6 6.1520 -4.4186 -1.4651 27 6 4.6721 -1.9122 -1.1604 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2132 2.3143 0.0005 32 1 1.3094 4.5149 -0.0041 33 1 3.7434 4.6867 -0.0014 34 1 5.8630 5.3916 -1.6521 35 1 5.7625 1.2824 -1.8527 36 1 6.6348 -0.0033 -0.9817 37 1 7.2430 -0.0383 -3.3721 38 1 5.5265 -0.1858 -3.8211 39 1 7.1161 -2.1876 -2.1522 40 1 6.6327 -2.3999 -3.8518 41 1 4.0937 -4.2966 -2.0889 42 1 6.3203 -4.1197 -4.1693 43 1 5.3535 -5.5691 -3.8039 44 1 4.5745 -4.1362 -4.5162 45 1 5.9498 -4.0320 -0.4662 46 1 6.1568 -5.5083 -1.4384 47 1 7.1234 -4.0588 -1.8042 48 1 5.4364 -2.1537 -0.4217 49 1 3.7192 -2.3412 -0.8503 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225842104.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:26 Heat of formation + Delta-G solvation = -59.675036 kcal Electronic energy + Delta-G solvation = -28675.063786 eV Core-core repulsion = 24988.244884 eV Total energy + Delta-G solvation = -3686.818902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.50214 -38.78791 -37.04656 -35.78715 -33.99723 -33.44799 -30.53507 -29.62335 -29.24085 -28.16244 -27.17365 -26.44394 -25.04355 -23.96457 -22.44869 -21.00395 -20.74941 -19.92949 -18.86028 -17.83306 -16.61457 -15.95124 -15.70320 -15.43778 -15.05942 -14.79199 -14.76283 -14.38398 -13.97020 -13.81873 -13.71403 -13.29682 -13.24611 -12.96580 -12.59039 -12.44477 -12.12568 -12.00810 -11.92574 -11.70535 -11.50239 -11.32118 -11.23647 -11.18170 -10.92734 -10.76437 -10.69618 -10.50410 -10.35609 -10.20521 -10.03088 -9.94648 -9.78195 -9.49885 -9.13715 -8.47713 -8.01198 -7.42861 -6.94092 -6.76600 -4.41322 2.62404 2.88944 3.03801 3.09744 3.15990 3.86115 3.98863 4.26189 4.51488 4.84715 5.05796 5.08242 5.25361 5.33937 5.42295 5.52000 5.58073 5.60268 5.65347 5.67299 5.72273 5.79842 5.83504 5.89293 5.90184 5.96750 6.04669 6.15689 6.18044 6.19340 6.23332 6.26870 6.37221 6.47717 6.56348 6.61810 6.83511 6.93095 6.97837 7.09424 7.19502 7.25113 7.37634 7.42442 7.63198 7.74496 7.92593 8.03434 8.40210 8.44598 8.71751 8.79437 9.22954 10.05947 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010192 B = 0.005615 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.508357 B = 4985.169201 C = 7181.755069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.320 6.320 3 C 0.134 3.866 4 C -0.319 4.319 5 C -0.077 4.077 6 C -0.180 4.180 7 C 0.127 3.873 8 C -0.432 4.432 9 H 0.089 0.911 10 C 0.076 3.924 11 N -0.783 5.783 12 Si 0.904 3.096 13 H -0.258 1.258 14 H -0.273 1.273 15 H -0.271 1.271 16 C -0.058 4.058 17 O -0.308 6.308 18 C 0.104 3.896 19 H 0.055 0.945 20 C -0.144 4.144 21 C -0.116 4.116 22 C 0.051 3.949 23 N -0.528 5.528 24 C 0.077 3.923 25 C -0.144 4.144 26 C -0.188 4.188 27 C 0.063 3.937 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.121 0.879 34 H 0.282 0.718 35 H 0.097 0.903 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.033 0.967 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.038 0.962 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.257 -10.179 -3.187 10.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.234 6.234 3 C 0.090 3.910 4 C -0.339 4.339 5 C -0.096 4.096 6 C -0.200 4.200 7 C 0.124 3.876 8 C -0.461 4.461 9 H 0.107 0.893 10 C -0.143 4.143 11 N -0.407 5.407 12 Si 0.728 3.272 13 H -0.181 1.181 14 H -0.199 1.199 15 H -0.196 1.196 16 C -0.104 4.104 17 O -0.223 6.223 18 C 0.047 3.953 19 H 0.073 0.927 20 C -0.181 4.181 21 C -0.154 4.154 22 C -0.077 4.077 23 N -0.253 5.253 24 C -0.031 4.031 25 C -0.201 4.201 26 C -0.247 4.247 27 C -0.064 4.064 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.139 0.861 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.056 0.944 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.091 -10.096 -3.519 10.692 hybrid contribution 0.980 0.329 0.460 1.132 sum 1.071 -9.766 -3.059 10.290 Atomic orbital electron populations 1.22778 0.80887 1.01859 1.00554 1.86070 1.19331 1.28498 1.89545 1.19201 0.91353 0.83164 0.97290 1.20290 0.97264 0.92289 1.24093 1.20214 0.95055 0.95075 0.99216 1.20928 0.92018 0.98918 1.08104 1.17622 0.93701 0.89071 0.87203 1.19558 0.91527 1.01605 1.33366 0.89325 1.25963 1.00635 0.95035 0.92710 1.69865 1.38466 1.11069 1.21328 0.86309 0.81872 0.79532 0.79496 1.18106 1.19856 1.19594 1.17851 0.84738 0.86271 1.21506 1.85985 1.70505 1.39446 1.26386 1.22013 0.95685 0.90703 0.86895 0.92672 1.22325 0.97415 1.03161 0.95228 1.21591 1.01152 0.93649 0.99003 1.22197 0.89793 0.96120 0.99568 1.62042 1.29353 1.05427 1.28522 1.21662 0.98588 0.87524 0.95341 1.21869 1.02052 0.99860 0.96342 1.22491 1.00171 1.01325 1.00664 1.22004 1.00392 0.95139 0.88884 0.93697 0.89895 0.93661 0.88533 0.89129 0.86141 0.90718 0.88481 0.92512 0.91952 0.91589 0.94879 0.91049 0.90143 0.92583 0.92596 0.91879 0.92248 0.92448 0.92412 0.94423 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 9.81 101.05 0.99 1.56 16 2 O -0.32 -6.93 10.28 -34.32 -0.35 -7.28 16 3 C 0.13 3.22 6.69 -39.17 -0.26 2.96 16 4 C -0.32 -7.24 9.05 -39.21 -0.35 -7.60 16 5 C -0.08 -1.79 9.96 -40.02 -0.40 -2.19 16 6 C -0.18 -4.58 8.64 -39.26 -0.34 -4.91 16 7 C 0.13 3.33 5.57 -106.70 -0.59 2.73 16 8 C -0.43 -10.93 5.91 -37.84 -0.22 -11.15 16 9 H 0.09 2.26 7.12 -52.48 -0.37 1.89 16 10 C 0.08 1.80 5.13 -17.33 -0.09 1.71 16 11 N -0.78 -19.14 10.99 55.55 0.61 -18.53 16 12 Si 0.90 18.07 29.60 -169.99 -5.03 13.04 16 13 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 14 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 15 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 16 C -0.06 -1.47 5.61 -38.22 -0.21 -1.69 16 17 O -0.31 -7.43 8.86 -33.47 -0.30 -7.72 16 18 C 0.10 2.17 2.83 -26.65 -0.08 2.09 16 19 H 0.06 1.26 7.91 -51.93 -0.41 0.85 16 20 C -0.14 -2.86 4.41 -26.61 -0.12 -2.97 16 21 C -0.12 -1.90 6.09 -26.65 -0.16 -2.06 16 22 C 0.05 0.73 4.64 -3.83 -0.02 0.71 16 23 N -0.53 -8.00 4.64 -226.69 -1.05 -9.05 16 24 C 0.08 0.95 2.96 -67.72 -0.20 0.75 16 25 C -0.14 -1.49 8.99 37.16 0.33 -1.16 16 26 C -0.19 -2.14 8.50 37.15 0.32 -1.83 16 27 C 0.06 1.12 4.68 -3.83 -0.02 1.10 16 28 H 0.04 0.69 7.66 -51.93 -0.40 0.29 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.04 0.69 7.66 -51.93 -0.40 0.29 16 31 H 0.10 1.93 6.27 -52.49 -0.33 1.60 16 32 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.12 3.11 6.19 -52.48 -0.32 2.78 16 34 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 35 H 0.10 2.23 5.97 -51.93 -0.31 1.92 16 36 H 0.06 1.13 8.09 -51.93 -0.42 0.71 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.03 0.48 6.62 -51.93 -0.34 0.13 16 40 H 0.07 0.90 6.03 -51.93 -0.31 0.59 16 41 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 42 H 0.06 0.57 6.30 -51.93 -0.33 0.24 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.74 6.65 -51.93 -0.35 0.40 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.66 6.52 -51.93 -0.34 0.32 16 48 H 0.04 0.66 6.73 -51.93 -0.35 0.31 16 49 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 LS Contribution 372.24 15.07 5.61 5.61 Total: -1.00 -27.21 372.24 -9.85 -37.06 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -7.91 Total: 8.81 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -1.43 Total: -21.94 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: -0.44 Total: -27.58 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.65 Total: -15.00 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.21 -9.85 -37.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842104.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.612 kcal (2) G-P(sol) polarization free energy of solvation -27.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds