Wall clock time and date at job start Tue Mar 31 2020 12:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47352 * 2 1 4 4 H 1.09003 * 109.47235 * 305.60075 * 3 2 1 5 5 C 1.50698 * 109.47316 * 185.60193 * 3 2 1 6 6 H 1.08005 * 119.99907 * 240.00143 * 5 3 2 7 7 C 1.37876 * 120.00061 * 59.99666 * 5 3 2 8 8 N 1.31510 * 120.00106 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00015 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47067 * 90.00451 * 9 7 5 11 11 H 1.48496 * 109.47410 * 210.00374 * 9 7 5 12 12 H 1.48497 * 109.47237 * 330.00651 * 9 7 5 13 13 N 1.46901 * 109.46859 * 65.60291 * 3 2 1 14 14 C 1.46901 * 110.99697 * 202.76957 * 13 3 2 15 15 H 1.09002 * 109.47309 * 325.81355 * 14 13 3 16 16 C 1.50696 * 109.47084 * 205.80804 * 14 13 3 17 17 O 1.20832 * 120.00102 * 0.02562 * 16 14 13 18 18 O 1.34228 * 120.00213 * 179.97438 * 16 14 13 19 19 C 1.45198 * 117.00254 * 180.02562 * 18 16 14 20 20 C 1.53006 * 109.47003 * 60.00412 * 19 18 16 21 21 C 1.52998 * 109.47300 * 180.02562 * 19 18 16 22 22 C 1.53004 * 109.47290 * 300.00336 * 19 18 16 23 23 C 1.50702 * 109.47133 * 85.80915 * 14 13 3 24 24 C 1.38241 * 120.00035 * 46.54096 * 23 14 13 25 25 C 1.38232 * 119.99958 * 179.81349 * 24 23 14 26 26 C 1.38230 * 120.00010 * 0.38386 * 25 24 23 27 27 C 1.38234 * 120.00322 * 359.86660 * 26 25 24 28 28 C 1.38234 * 120.00327 * 226.80554 * 23 14 13 29 29 H 1.08999 * 109.46705 * 293.80371 * 1 2 3 30 30 H 1.09004 * 109.47229 * 53.80211 * 1 2 3 31 31 H 1.09002 * 109.47512 * 173.80741 * 1 2 3 32 32 H 1.09004 * 109.47303 * 240.00230 * 2 1 3 33 33 H 1.09000 * 109.47553 * 120.00568 * 2 1 3 34 34 H 0.97002 * 120.00367 * 179.97438 * 8 7 5 35 35 H 1.00904 * 110.99720 * 326.71734 * 13 3 2 36 36 H 1.08996 * 109.47077 * 59.99969 * 20 19 18 37 37 H 1.08997 * 109.47213 * 180.02562 * 20 19 18 38 38 H 1.09006 * 109.46905 * 300.00089 * 20 19 18 39 39 H 1.09003 * 109.47110 * 60.00579 * 21 19 18 40 40 H 1.09007 * 109.47150 * 180.02562 * 21 19 18 41 41 H 1.08996 * 109.47363 * 300.00387 * 21 19 18 42 42 H 1.09003 * 109.46576 * 59.99920 * 22 19 18 43 43 H 1.08997 * 109.47257 * 179.97438 * 22 19 18 44 44 H 1.08992 * 109.46863 * 300.00088 * 22 19 18 45 45 H 1.07999 * 119.99714 * 359.97438 * 24 23 14 46 46 H 1.07997 * 120.00010 * 180.23105 * 25 24 23 47 47 H 1.08007 * 119.99931 * 179.83542 * 26 25 24 48 48 H 1.08003 * 120.00457 * 179.97438 * 27 26 25 49 49 H 1.08000 * 119.99766 * 359.97438 * 28 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5971 1.9845 -0.8356 5 6 3.5406 1.4448 -0.1387 6 1 4.1536 1.8866 0.6330 7 6 4.1310 0.8827 -1.2507 8 7 3.3846 0.3450 -2.1905 9 14 5.9911 0.8861 -1.4229 10 1 6.5471 -0.3475 -0.8111 11 1 6.3549 0.9323 -2.8619 12 1 6.5499 2.0762 -0.7326 13 7 1.6639 2.0948 1.2613 14 6 1.6349 3.5558 1.1102 15 1 2.4109 3.8640 0.4095 16 6 1.8799 4.2041 2.4483 17 8 2.0606 3.5194 3.4274 18 8 1.8985 5.5422 2.5525 19 6 2.1407 6.0975 3.8720 20 6 3.5047 5.6267 4.3809 21 6 2.1249 7.6253 3.7932 22 6 1.0473 5.6255 4.8326 23 6 0.2873 3.9799 0.5857 24 6 -0.8663 3.4663 1.1482 25 6 -2.1024 3.8584 0.6697 26 6 -2.1849 4.7579 -0.3766 27 6 -1.0314 5.2676 -0.9426 28 6 0.2048 4.8785 -0.4615 29 1 -0.3633 0.4148 0.9403 30 1 -0.3634 0.6069 -0.8293 31 1 -0.3634 -1.0217 -0.1109 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.7999 -0.0501 -2.9730 35 1 0.7777 1.7485 1.5973 36 1 4.2836 5.9629 3.6967 37 1 3.6863 6.0431 5.3717 38 1 3.5155 4.5381 4.4371 39 1 1.1530 7.9605 3.4309 40 1 2.3072 8.0422 4.7838 41 1 2.9036 7.9620 3.1089 42 1 1.0582 4.5370 4.8888 43 1 1.2294 6.0419 5.8233 44 1 0.0757 5.9609 4.4700 45 1 -0.8017 2.7607 1.9633 46 1 -3.0037 3.4599 1.1116 47 1 -3.1508 5.0622 -0.7523 48 1 -1.0958 5.9702 -1.7604 49 1 1.1061 5.2768 -0.9036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255150722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:30 Heat of formation + Delta-G solvation = -64.755364 kcal Electronic energy + Delta-G solvation = -28605.988537 eV Core-core repulsion = 24918.949335 eV Total energy + Delta-G solvation = -3687.039202 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -40.58624 -39.10820 -36.94329 -35.92506 -33.92926 -33.08997 -31.60566 -30.71639 -29.74755 -27.38636 -27.31439 -27.04863 -25.62077 -22.87199 -22.50638 -22.16715 -20.74504 -19.58016 -19.11130 -17.17769 -16.55397 -16.26848 -16.15744 -15.71400 -14.99217 -14.90959 -14.55180 -14.43594 -14.08802 -13.79165 -13.61103 -13.42231 -13.17586 -12.76021 -12.57536 -12.47124 -12.19275 -12.11778 -11.98454 -11.82270 -11.76814 -11.68713 -11.33000 -11.22374 -11.05189 -10.96845 -10.86387 -10.72861 -10.60925 -10.14100 -10.00453 -9.95173 -9.67228 -9.55290 -9.12041 -8.71366 -8.48831 -8.36718 -7.39714 -5.99200 -4.03965 1.51139 1.61218 2.75738 2.97203 3.32291 3.38817 3.42922 3.99707 4.43477 4.78251 4.81183 4.91984 4.95335 5.01427 5.10022 5.15853 5.29384 5.30377 5.43291 5.47437 5.55781 5.69670 5.69977 5.74282 5.77337 5.89227 5.90525 5.95198 6.00247 6.15133 6.17005 6.19301 6.24864 6.32217 6.41569 6.42668 6.62906 6.67581 6.78975 6.84804 6.87914 7.06553 7.11325 7.18455 7.41859 7.73188 7.87345 8.11070 8.31148 8.40296 8.64304 9.03726 9.61289 11.05950 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009887 B = 0.005392 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.186399 B = 5191.292755 C = 6753.033987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.223 3.777 4 H 0.009 0.991 5 C -0.499 4.499 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.658 5.658 14 C 0.143 3.857 15 H 0.126 0.874 16 C 0.474 3.526 17 O -0.484 6.484 18 O -0.353 6.353 19 C 0.116 3.884 20 C -0.183 4.183 21 C -0.139 4.139 22 C -0.181 4.181 23 C -0.097 4.097 24 C -0.111 4.111 25 C -0.120 4.120 26 C -0.124 4.124 27 C -0.120 4.120 28 C -0.094 4.094 29 H 0.033 0.967 30 H 0.043 0.957 31 H 0.037 0.963 32 H 0.102 0.898 33 H 0.042 0.958 34 H 0.260 0.740 35 H 0.328 0.672 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.120 0.880 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.662 12.153 7.399 16.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.116 3.884 4 H 0.026 0.974 5 C -0.538 4.538 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.290 5.290 14 C 0.030 3.970 15 H 0.143 0.857 16 C 0.315 3.685 17 O -0.369 6.369 18 O -0.271 6.271 19 C 0.080 3.920 20 C -0.240 4.240 21 C -0.196 4.196 22 C -0.238 4.238 23 C -0.099 4.099 24 C -0.130 4.130 25 C -0.138 4.138 26 C -0.142 4.142 27 C -0.138 4.138 28 C -0.113 4.113 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.120 0.880 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.148 0.852 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.138 0.862 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.915 11.830 7.814 16.238 hybrid contribution 0.217 0.008 -0.572 0.612 sum -7.699 11.837 7.242 15.870 Atomic orbital electron populations 1.21877 0.99476 0.99759 0.99537 1.21744 0.91323 0.99901 1.03271 1.19228 0.95557 0.90158 0.83431 0.97382 1.21206 0.91084 1.37140 1.04342 0.92018 1.24924 0.98072 0.95474 0.95749 1.69869 1.34694 1.39190 1.09506 0.86562 0.85787 0.78510 0.76935 1.20707 1.21390 1.19979 1.60492 1.35470 0.98827 1.34198 1.20032 0.94857 0.91549 0.90539 0.85661 1.23739 0.72813 0.80089 0.91848 1.90515 1.43638 1.64131 1.38590 1.86576 1.82610 1.23692 1.34248 1.22057 0.95623 0.93643 0.80681 1.22489 0.95557 1.04791 1.01194 1.21823 1.03149 0.92057 1.02551 1.22465 0.97971 1.04527 0.98833 1.20448 0.95214 0.97362 0.96902 1.20952 0.92242 0.99774 1.00007 1.21012 0.97160 0.98233 0.97365 1.21085 0.98192 0.97993 0.96935 1.21100 0.92500 1.00283 0.99948 1.21092 0.97997 0.96401 0.95802 0.94762 0.93779 0.94342 0.88008 0.93873 0.93009 0.85221 0.92048 0.91595 0.89449 0.91703 0.90796 0.91568 0.89683 0.91555 0.92290 0.86294 0.86340 0.86467 0.86202 0.85708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.62 37.15 0.36 -2.53 16 2 C -0.12 -2.90 5.38 -26.73 -0.14 -3.04 16 3 C 0.22 5.39 1.85 -68.86 -0.13 5.27 16 4 H 0.01 0.22 7.69 -51.93 -0.40 -0.18 16 5 C -0.50 -13.50 8.38 -34.44 -0.29 -13.79 16 6 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 7 C 0.06 1.59 5.29 -17.82 -0.09 1.50 16 8 N -0.89 -24.85 11.29 55.43 0.63 -24.22 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.66 -14.03 5.52 -103.39 -0.57 -14.60 16 14 C 0.14 2.73 2.55 -70.02 -0.18 2.56 16 15 H 0.13 2.58 7.33 -51.93 -0.38 2.20 16 16 C 0.47 8.72 6.54 36.00 0.24 8.95 16 17 O -0.48 -9.64 11.93 -18.76 -0.22 -9.86 16 18 O -0.35 -5.77 9.81 -39.25 -0.38 -6.15 16 19 C 0.12 1.56 1.13 -90.62 -0.10 1.46 16 20 C -0.18 -2.47 8.37 37.16 0.31 -2.15 16 21 C -0.14 -1.43 8.85 37.16 0.33 -1.10 16 22 C -0.18 -2.29 8.37 37.16 0.31 -1.98 16 23 C -0.10 -1.64 4.56 -104.62 -0.48 -2.12 16 24 C -0.11 -1.73 8.94 -39.58 -0.35 -2.08 16 25 C -0.12 -1.60 10.05 -39.59 -0.40 -2.00 16 26 C -0.12 -1.57 10.05 -39.59 -0.40 -1.96 16 27 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 28 C -0.09 -1.46 9.67 -39.58 -0.38 -1.85 16 29 H 0.03 0.60 6.67 -51.93 -0.35 0.25 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.10 2.66 5.94 -51.93 -0.31 2.35 16 33 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 35 H 0.33 6.54 4.55 -39.29 -0.18 6.36 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 1.42 5.89 -51.93 -0.31 1.11 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.28 5.89 -51.93 -0.31 0.97 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.12 1.82 6.90 -52.49 -0.36 1.46 16 46 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 47 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 48 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 49 H 0.12 1.83 7.99 -52.49 -0.42 1.42 16 LS Contribution 389.61 15.07 5.87 5.87 Total: -1.00 -29.26 389.61 -9.55 -38.81 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -8.05 Total: 10.74 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -1.80 Total: -16.88 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.05 Total: -38.83 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.61 Total: -16.01 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.26 -9.55 -38.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.944 kcal (2) G-P(sol) polarization free energy of solvation -29.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds