Wall clock time and date at job start Tue Mar 31 2020 12:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47439 * 2 1 4 4 H 1.08999 * 109.47222 * 179.12197 * 3 2 1 5 5 C 1.50706 * 109.46938 * 59.12071 * 3 2 1 6 6 H 1.08001 * 119.99739 * 240.00155 * 5 3 2 7 7 C 1.37870 * 119.99629 * 60.00156 * 5 3 2 8 8 N 1.31516 * 120.00556 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99824 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46678 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47395 * 120.00181 * 9 7 5 12 12 H 1.48504 * 109.47128 * 240.00427 * 9 7 5 13 13 N 1.46898 * 109.46796 * 299.12184 * 3 2 1 14 14 C 1.46897 * 111.00125 * 273.88127 * 13 3 2 15 15 C 1.50699 * 109.46964 * 184.40670 * 14 13 3 16 16 C 1.38165 * 120.03160 * 259.99755 * 15 14 13 17 17 C 1.38243 * 120.06056 * 179.97438 * 16 15 14 18 18 C 1.38295 * 120.11039 * 0.02562 * 17 16 15 19 19 C 1.38117 * 120.05345 * 0.02562 * 18 17 16 20 20 C 1.38720 * 120.03067 * 80.00285 * 15 14 13 21 21 O 1.35899 * 120.04978 * 359.97438 * 20 15 14 22 22 C 1.42902 * 116.99803 * 179.13731 * 21 20 15 23 23 C 1.53174 * 109.54017 * 274.23278 * 22 21 20 24 24 C 1.53108 * 109.15451 * 183.23988 * 23 22 21 25 25 O 1.42904 * 109.48622 * 57.47626 * 24 23 22 26 26 C 1.42899 * 114.09960 * 298.88663 * 25 24 23 27 27 C 1.53097 * 109.41485 * 61.15622 * 26 25 24 28 28 H 1.08995 * 109.47081 * 64.66209 * 1 2 3 29 29 H 1.08996 * 109.46662 * 184.66440 * 1 2 3 30 30 H 1.09004 * 109.46860 * 304.66366 * 1 2 3 31 31 H 1.08999 * 109.47245 * 240.00131 * 2 1 3 32 32 H 1.08998 * 109.47445 * 120.00229 * 2 1 3 33 33 H 0.96994 * 119.99955 * 180.02562 * 8 7 5 34 34 H 1.00907 * 110.99954 * 149.92722 * 13 3 2 35 35 H 1.08994 * 109.47310 * 64.40926 * 14 13 3 36 36 H 1.08998 * 109.47186 * 304.40646 * 14 13 3 37 37 H 1.08001 * 119.96846 * 359.97438 * 16 15 14 38 38 H 1.07999 * 119.94850 * 180.27957 * 17 16 15 39 39 H 1.08001 * 119.96968 * 179.97438 * 18 17 16 40 40 H 1.08005 * 120.02754 * 180.02562 * 19 18 17 41 41 H 1.09002 * 109.54571 * 34.40769 * 22 21 20 42 42 H 1.09001 * 109.52354 * 303.05704 * 23 22 21 43 43 H 1.08999 * 109.52804 * 63.25035 * 23 22 21 44 44 H 1.08994 * 109.40896 * 297.49167 * 24 23 22 45 45 H 1.09008 * 109.48905 * 177.50904 * 24 23 22 46 46 H 1.09002 * 109.48018 * 301.18184 * 26 25 24 47 47 H 1.08995 * 109.49478 * 181.14483 * 26 25 24 48 48 H 1.08998 * 109.52161 * 182.48864 * 27 26 25 49 49 H 1.09004 * 109.57336 * 62.33228 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1300 1.4425 0.0157 5 6 1.5200 2.1592 1.2195 6 1 0.9007 3.0368 1.1069 7 6 1.8350 1.6945 2.4787 8 7 2.5896 0.6262 2.6158 9 14 1.1910 2.5832 3.9903 10 1 0.3729 3.7486 3.5683 11 1 0.3541 1.6545 4.7916 12 1 2.3345 3.0538 4.8126 13 7 1.5678 2.1288 -1.2099 14 6 2.4821 1.8988 -2.3364 15 6 2.0254 2.7030 -3.5263 16 6 1.3095 2.0939 -4.5389 17 6 0.8898 2.8312 -5.6304 18 6 1.1857 4.1796 -5.7121 19 6 1.9020 4.7930 -4.7029 20 6 2.3235 4.0554 -3.6059 21 8 3.0272 4.6569 -2.6110 22 6 3.3142 6.0479 -2.7688 23 6 4.5964 6.2165 -3.5896 24 6 4.9399 7.7056 -3.6846 25 8 5.0799 8.2473 -2.3697 26 6 3.8963 8.1604 -1.5737 27 6 3.5120 6.6897 -1.3920 28 1 -0.3633 0.4398 -0.9288 29 1 -0.3632 -1.0242 0.0836 30 1 -0.3633 0.5845 0.8453 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.8108 0.2991 3.5017 34 1 1.4437 3.1158 -1.0407 35 1 2.4835 0.8394 -2.5928 36 1 3.4895 2.2058 -2.0554 37 1 1.0775 1.0409 -4.4777 38 1 0.3264 2.3543 -6.4188 39 1 0.8570 4.7534 -6.5660 40 1 2.1325 5.8462 -4.7669 41 1 2.4856 6.5352 -3.2826 42 1 5.4139 5.6859 -3.1015 43 1 4.4443 5.8119 -4.5902 44 1 4.1411 8.2287 -4.2101 45 1 5.8756 7.8289 -4.2301 46 1 3.0837 8.6895 -2.0717 47 1 4.0798 8.6113 -0.5985 48 1 2.5851 6.6230 -0.8225 49 1 4.3061 6.1681 -0.8577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159576.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:59 Heat of formation + Delta-G solvation = -85.137839 kcal Electronic energy + Delta-G solvation = -27840.766335 eV Core-core repulsion = 24152.843283 eV Total energy + Delta-G solvation = -3687.923052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.59869 -40.03423 -38.35550 -37.86849 -34.91666 -33.81570 -33.01740 -32.22007 -31.42512 -30.60212 -28.32411 -26.05777 -25.85392 -24.91807 -24.66076 -23.22355 -22.29882 -21.18049 -20.91228 -19.16325 -18.40319 -17.60250 -17.16863 -17.00949 -16.63122 -16.46099 -16.19838 -15.79326 -15.61455 -15.55216 -15.28012 -15.12218 -14.50877 -14.41458 -14.17753 -14.07162 -13.93202 -13.53040 -13.37158 -13.05537 -12.93263 -12.84849 -12.65191 -12.44912 -12.40221 -12.39568 -12.26521 -11.99470 -11.68500 -11.57728 -11.44577 -11.36093 -11.25804 -10.80023 -10.71820 -10.54805 -9.79164 -9.12185 -8.91612 -8.09757 -6.21872 0.42271 0.55240 1.39028 1.40930 1.52115 2.18988 2.41671 2.84558 2.89343 3.18693 3.58886 3.61865 3.75995 3.82383 3.88360 3.97536 4.00379 4.18213 4.20240 4.21678 4.41081 4.44473 4.54516 4.57122 4.61619 4.66402 4.68136 4.74600 4.75269 4.78917 4.91313 4.95133 4.96516 5.03354 5.11761 5.12657 5.29499 5.39688 5.42867 5.55440 5.57893 5.68654 5.70627 5.83256 5.88731 5.95823 6.16719 6.27258 6.46936 6.56626 6.78415 7.01525 7.46375 8.95760 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009975 B = 0.004502 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.307449 B = 6218.432960 C = 8467.880543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.097 4.097 3 C 0.222 3.778 4 H -0.044 1.044 5 C -0.518 4.518 6 H 0.053 0.947 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.954 3.046 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.283 1.283 13 N -0.666 5.666 14 C 0.115 3.885 15 C -0.129 4.129 16 C -0.075 4.075 17 C -0.158 4.158 18 C -0.080 4.080 19 C -0.214 4.214 20 C 0.119 3.881 21 O -0.328 6.328 22 C 0.080 3.920 23 C -0.174 4.174 24 C 0.066 3.934 25 O -0.401 6.401 26 C 0.071 3.929 27 C -0.155 4.155 28 H 0.050 0.950 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.019 0.981 32 H 0.058 0.942 33 H 0.260 0.740 34 H 0.327 0.673 35 H 0.065 0.935 36 H 0.005 0.995 37 H 0.132 0.868 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.147 0.853 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.113 0.887 46 H 0.076 0.924 47 H 0.111 0.889 48 H 0.081 0.919 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.364 13.580 -18.058 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.136 4.136 3 C 0.114 3.886 4 H -0.026 1.026 5 C -0.557 4.557 6 H 0.071 0.929 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.780 3.220 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.209 1.209 13 N -0.296 5.296 14 C -0.014 4.014 15 C -0.130 4.130 16 C -0.094 4.094 17 C -0.176 4.176 18 C -0.098 4.098 19 C -0.232 4.232 20 C 0.074 3.926 21 O -0.242 6.242 22 C 0.025 3.975 23 C -0.212 4.212 24 C -0.011 4.011 25 O -0.320 6.320 26 C -0.006 4.006 27 C -0.193 4.193 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.144 0.856 35 H 0.084 0.916 36 H 0.023 0.977 37 H 0.149 0.851 38 H 0.167 0.833 39 H 0.174 0.826 40 H 0.164 0.836 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.131 0.869 46 H 0.095 0.905 47 H 0.129 0.871 48 H 0.100 0.900 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.453 12.956 -17.836 22.049 hybrid contribution 0.643 0.304 1.438 1.604 sum 0.191 13.260 -16.398 21.089 Atomic orbital electron populations 1.21288 0.95781 0.98382 1.00793 1.21297 0.96446 0.97445 0.98384 1.18949 0.90466 0.92426 0.86779 1.02603 1.21402 1.31228 1.11733 0.91318 0.92902 1.25622 0.95279 0.95699 1.01581 1.70032 1.38074 1.24203 1.23369 0.85564 0.78097 0.78803 0.79534 1.19132 1.20488 1.20862 1.60791 1.47663 1.15549 1.05554 1.20568 0.92853 0.98138 0.89830 1.19338 1.03971 0.91810 0.97885 1.21070 0.95071 1.00596 0.92639 1.21347 1.02644 0.94768 0.98857 1.21298 0.95575 0.94822 0.98124 1.21419 1.05465 1.00962 0.95368 1.19081 0.92795 0.92013 0.88730 1.86221 1.69394 1.25601 1.43003 1.22622 0.97806 0.79479 0.97635 1.22733 0.97506 0.99569 1.01428 1.22703 1.03919 0.90355 0.84103 1.87931 1.36500 1.81179 1.26370 1.22651 0.87940 0.92878 0.97103 1.22321 1.03198 0.97770 0.96051 0.93101 0.94706 0.94531 0.96235 0.92387 0.93029 0.85621 0.91615 0.97699 0.85054 0.83307 0.82634 0.83572 0.88954 0.92214 0.89258 0.90638 0.86901 0.90549 0.87090 0.90044 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.81 9.53 71.98 0.69 -4.12 16 2 C -0.10 -4.93 5.59 30.60 0.17 -4.76 16 3 C 0.22 11.84 2.31 44.17 0.10 11.94 16 4 H -0.04 -2.64 7.71 -2.39 -0.02 -2.66 16 5 C -0.52 -29.12 7.21 25.60 0.18 -28.93 16 6 H 0.05 2.96 7.60 -2.91 -0.02 2.94 16 7 C 0.02 0.97 5.30 84.65 0.45 1.41 16 8 N -0.92 -54.01 11.33 21.44 0.24 -53.77 16 9 Si 0.95 44.43 29.54 68.60 2.03 46.45 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 N -0.67 -30.38 5.69 -499.47 -2.84 -33.22 16 14 C 0.12 4.67 5.33 85.56 0.46 5.13 16 15 C -0.13 -4.31 5.37 -19.77 -0.11 -4.41 16 16 C -0.08 -2.08 9.66 22.25 0.22 -1.86 16 17 C -0.16 -3.36 10.04 22.28 0.22 -3.14 16 18 C -0.08 -1.55 10.04 22.25 0.22 -1.32 16 19 C -0.21 -4.85 8.45 22.36 0.19 -4.67 16 20 C 0.12 3.64 6.54 22.51 0.15 3.78 16 21 O -0.33 -10.74 9.00 -92.42 -0.83 -11.57 16 22 C 0.08 1.92 2.20 30.71 0.07 1.98 16 23 C -0.17 -3.55 5.54 30.69 0.17 -3.38 16 24 C 0.07 1.04 6.84 72.02 0.49 1.53 16 25 O -0.40 -8.40 10.77 -148.98 -1.60 -10.00 16 26 C 0.07 1.29 6.84 72.01 0.49 1.79 16 27 C -0.16 -3.79 5.79 30.69 0.18 -3.61 16 28 H 0.05 2.20 7.77 -2.39 -0.02 2.18 16 29 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.79 7.03 -2.38 -0.02 1.78 16 31 H 0.02 0.91 7.59 -2.39 -0.02 0.89 16 32 H 0.06 3.28 6.09 -2.39 -0.01 3.27 16 33 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 34 H 0.33 15.36 8.05 -89.69 -0.72 14.64 16 35 H 0.07 2.62 7.46 -2.39 -0.02 2.60 16 36 H 0.00 0.22 7.66 -2.39 -0.02 0.20 16 37 H 0.13 3.40 8.04 -2.91 -0.02 3.38 16 38 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 40 H 0.15 2.53 5.66 -2.91 -0.02 2.52 16 41 H 0.09 1.80 5.95 -2.39 -0.01 1.78 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.09 1.61 7.45 -2.39 -0.02 1.60 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -67.28 383.85 1.54 -65.74 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.21 Total: 29.01 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 4.34 Total: -32.65 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -2.60 Total: -86.99 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -2.44 Total: -21.57 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -67.28 1.54 -65.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159576.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.397 kcal (2) G-P(sol) polarization free energy of solvation -67.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds