Wall clock time and date at job start Tue Mar 31 2020 12:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47507 * 2 1 4 4 H 1.09003 * 109.47047 * 56.57497 * 3 2 1 5 5 C 1.50700 * 109.47506 * 176.57598 * 3 2 1 6 6 H 1.07999 * 120.00115 * 114.25811 * 5 3 2 7 7 C 1.37880 * 119.99816 * 294.26107 * 5 3 2 8 8 N 1.31514 * 120.00088 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00049 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46897 * 59.99741 * 9 7 5 11 11 H 1.48494 * 109.47116 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46918 * 299.99718 * 9 7 5 13 13 N 1.46900 * 109.47154 * 296.57518 * 3 2 1 14 14 C 1.46897 * 111.00003 * 155.00787 * 13 3 2 15 15 C 1.50700 * 109.54372 * 306.16252 * 14 13 3 16 16 C 1.38289 * 119.97132 * 147.77645 * 15 14 13 17 17 C 1.38242 * 120.11464 * 179.97438 * 16 15 14 18 18 C 1.38167 * 120.05486 * 0.04766 * 17 16 15 19 19 C 1.38715 * 119.94199 * 359.97333 * 18 17 16 20 20 O 1.35895 * 120.05539 * 180.02562 * 19 18 17 21 21 C 1.42903 * 117.00292 * 359.97438 * 20 19 18 22 22 C 1.38116 * 119.97631 * 327.49841 * 15 14 13 23 23 C 1.53176 * 109.54277 * 185.98701 * 14 13 3 24 24 C 1.53290 * 109.06321 * 297.03076 * 23 14 13 25 25 O 1.42910 * 109.45831 * 302.44751 * 24 23 14 26 26 C 1.42901 * 114.09775 * 61.15777 * 25 24 23 27 27 C 1.53098 * 109.41372 * 298.83687 * 26 25 24 28 28 H 1.09002 * 109.46589 * 63.66722 * 1 2 3 29 29 H 1.08995 * 109.46980 * 183.66481 * 1 2 3 30 30 H 1.08998 * 109.46896 * 303.67119 * 1 2 3 31 31 H 1.09007 * 109.47353 * 239.99958 * 2 1 3 32 32 H 1.09002 * 109.47114 * 120.00156 * 2 1 3 33 33 H 0.97000 * 120.00408 * 180.02562 * 8 7 5 34 34 H 1.00897 * 111.00206 * 278.96765 * 13 3 2 35 35 H 1.07998 * 119.94486 * 359.97438 * 16 15 14 36 36 H 1.08001 * 119.97286 * 180.02562 * 17 16 15 37 37 H 1.08000 * 120.03359 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.47039 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.46840 * 300.00299 * 21 20 19 40 40 H 1.09004 * 109.46974 * 59.99893 * 21 20 19 41 41 H 1.08007 * 120.02514 * 0.02562 * 22 15 14 42 42 H 1.08992 * 109.52682 * 57.02022 * 23 14 13 43 43 H 1.09006 * 109.52268 * 177.21225 * 23 14 13 44 44 H 1.08994 * 109.45494 * 182.45471 * 24 23 14 45 45 H 1.08995 * 109.46770 * 62.44817 * 24 23 14 46 46 H 1.09005 * 109.47821 * 178.86309 * 26 25 24 47 47 H 1.08988 * 109.49139 * 58.82932 * 26 25 24 48 48 H 1.08992 * 109.52807 * 297.70484 * 27 26 25 49 49 H 1.09004 * 109.52007 * 177.51608 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6275 1.9737 0.8577 5 6 3.5447 1.4433 0.0849 6 1 4.1321 1.8108 -0.7436 7 6 4.1714 0.9748 1.2201 8 7 3.4561 0.5277 2.2291 9 14 6.0364 0.9752 1.3251 10 1 6.5398 2.3652 1.1851 11 1 6.4584 0.4264 2.6388 12 1 6.5937 0.1347 0.2350 13 7 1.6192 2.1107 -1.2387 14 6 1.5453 3.5660 -1.0528 15 6 0.6643 3.8791 0.1291 16 6 0.9254 4.9899 0.9103 17 6 0.1189 5.2803 1.9949 18 6 -0.9500 4.4603 2.3015 19 6 -1.2138 3.3452 1.5197 20 8 -2.2649 2.5374 1.8189 21 6 -3.0564 2.8960 2.9534 22 6 -0.4067 3.0598 0.4278 23 6 0.9626 4.2145 -2.3122 24 6 1.9073 3.9558 -3.4914 25 8 3.2044 4.4711 -3.1842 26 6 3.8166 3.8677 -2.0426 27 6 2.9507 4.1231 -0.8062 28 1 -0.3632 0.4559 -0.9211 29 1 -0.3633 -1.0255 0.0657 30 1 -0.3633 0.5698 0.8553 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8969 0.1984 3.0280 34 1 2.2333 1.8745 -2.0036 35 1 1.7609 5.6317 0.6728 36 1 0.3247 6.1486 2.6032 37 1 -1.5802 4.6877 3.1487 38 1 -3.8599 2.1704 3.0798 39 1 -2.4300 2.9042 3.8454 40 1 -3.4832 3.8872 2.8000 41 1 -0.6127 2.1946 -0.1851 42 1 -0.0154 3.7831 -2.5250 43 1 0.8618 5.2885 -2.1556 44 1 1.5208 4.4515 -4.3818 45 1 1.9760 2.8833 -3.6733 46 1 4.8054 4.3000 -1.8894 47 1 3.9104 2.7941 -2.2052 48 1 2.8899 5.1952 -0.6191 49 1 3.3931 3.6263 0.0573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160245.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:08 Heat of formation + Delta-G solvation = -52.552557 kcal Electronic energy + Delta-G solvation = -29699.443079 eV Core-core repulsion = 26012.933030 eV Total energy + Delta-G solvation = -3686.510048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.36457 -39.16214 -37.14742 -35.75015 -33.54435 -31.76647 -30.85961 -30.30569 -29.66069 -28.83106 -27.06327 -26.19782 -24.15959 -23.25483 -22.79638 -21.70482 -21.11764 -19.64521 -18.62133 -17.26051 -16.71339 -15.94466 -15.73666 -15.59844 -15.43579 -15.30011 -14.79601 -14.50755 -14.22483 -13.78662 -13.57208 -13.37599 -12.99516 -12.79850 -12.55610 -12.41400 -12.25828 -11.84849 -11.68663 -11.57338 -11.34799 -11.15843 -11.05956 -10.88033 -10.75416 -10.73384 -10.62749 -10.39533 -10.31104 -10.12664 -9.85636 -9.56658 -9.39787 -9.10531 -8.91533 -8.42846 -8.03974 -7.71998 -7.32158 -6.01247 -4.10014 1.82588 1.96116 3.25553 3.31677 3.33959 3.59564 4.25255 4.30854 4.37633 5.04367 5.06477 5.15060 5.25179 5.27330 5.33538 5.36547 5.41284 5.53142 5.57139 5.58160 5.66662 5.73893 5.91832 5.95378 6.07735 6.12988 6.14725 6.24787 6.31429 6.41936 6.46254 6.50253 6.60414 6.65417 6.71925 6.79900 6.88921 7.03812 7.13601 7.15159 7.22206 7.25110 7.44622 7.62291 7.66305 7.76863 7.82910 8.00897 8.13827 8.27838 8.63073 8.99432 9.54170 11.00725 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010078 B = 0.006614 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.572792 B = 4232.479048 C = 5456.339137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 C 0.209 3.791 4 H 0.053 0.947 5 C -0.546 4.546 6 H 0.060 0.940 7 C 0.070 3.930 8 N -0.880 5.880 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.679 5.679 14 C 0.164 3.836 15 C -0.011 4.011 16 C -0.154 4.154 17 C -0.090 4.090 18 C -0.217 4.217 19 C 0.116 3.884 20 O -0.317 6.317 21 C 0.031 3.969 22 C -0.123 4.123 23 C -0.136 4.136 24 C 0.063 3.937 25 O -0.394 6.394 26 C 0.061 3.939 27 C -0.186 4.186 28 H 0.048 0.952 29 H 0.023 0.977 30 H 0.047 0.953 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.261 0.739 34 H 0.329 0.671 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.151 0.849 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.054 0.946 46 H 0.084 0.916 47 H 0.062 0.938 48 H 0.056 0.944 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.547 7.312 -2.791 11.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.140 4.140 3 C 0.101 3.899 4 H 0.071 0.929 5 C -0.585 4.585 6 H 0.078 0.922 7 C -0.133 4.133 8 N -0.517 5.517 9 Si 0.707 3.293 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.310 5.310 14 C 0.072 3.928 15 C -0.011 4.011 16 C -0.172 4.172 17 C -0.108 4.108 18 C -0.236 4.236 19 C 0.071 3.929 20 O -0.231 6.231 21 C -0.065 4.065 22 C -0.142 4.142 23 C -0.175 4.175 24 C -0.014 4.014 25 O -0.313 6.313 26 C -0.016 4.016 27 C -0.225 4.225 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.148 0.852 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.169 0.831 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.072 0.928 46 H 0.102 0.898 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.193 7.077 -2.679 11.907 hybrid contribution 1.966 0.118 0.874 2.155 sum -7.227 7.195 -1.806 10.357 Atomic orbital electron populations 1.21876 0.98899 0.98490 1.00627 1.21442 0.92215 0.99427 1.00867 1.19313 0.92617 0.90829 0.87142 0.92936 1.21924 0.92670 1.42469 1.01466 0.92249 1.24903 0.97426 0.95079 0.95878 1.69910 1.34920 1.41431 1.05444 0.86866 0.86751 0.78373 0.77296 1.20321 1.21368 1.20308 1.61074 1.56177 1.03961 1.09769 1.19545 0.91935 0.90311 0.90965 1.19431 0.93634 0.92996 0.95077 1.20993 1.00686 0.98910 0.96661 1.20733 0.94494 0.98707 0.96857 1.21069 1.02187 0.97900 1.02457 1.19029 0.88476 0.90136 0.95250 1.86071 1.39676 1.50251 1.47065 1.22949 0.94624 1.01111 0.87809 1.20719 0.94562 1.01741 0.97140 1.22250 0.99672 1.00520 0.95011 1.22547 0.83317 0.98753 0.96822 1.87841 1.31210 1.64294 1.47934 1.22692 0.95857 0.98152 0.84850 1.23122 0.97130 1.00937 1.01267 0.93297 0.95808 0.93440 0.95229 0.90344 0.92920 0.85203 0.86146 0.86628 0.86451 0.88773 0.92933 0.93230 0.83113 0.90525 0.91559 0.89739 0.92772 0.89767 0.92004 0.92562 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.27 37.16 0.31 -2.56 16 2 C -0.10 -2.31 5.49 -26.73 -0.15 -2.46 16 3 C 0.21 4.74 1.07 -68.86 -0.07 4.67 16 4 H 0.05 1.36 5.47 -51.93 -0.28 1.07 16 5 C -0.55 -13.45 5.83 -34.44 -0.20 -13.65 16 6 H 0.06 1.42 4.82 -52.49 -0.25 1.16 16 7 C 0.07 1.83 5.31 -17.82 -0.09 1.74 16 8 N -0.88 -24.16 11.74 55.43 0.65 -23.51 16 9 Si 0.88 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.68 -13.04 4.51 -95.23 -0.43 -13.47 16 14 C 0.16 2.90 0.53 -132.57 -0.07 2.83 16 15 C -0.01 -0.20 3.50 -104.65 -0.37 -0.56 16 16 C -0.15 -2.65 9.14 -39.56 -0.36 -3.01 16 17 C -0.09 -1.42 10.04 -39.61 -0.40 -1.81 16 18 C -0.22 -3.45 9.04 -39.43 -0.36 -3.81 16 19 C 0.12 2.05 6.69 -39.22 -0.26 1.78 16 20 O -0.32 -5.23 10.50 -19.41 -0.20 -5.43 16 21 C 0.03 0.35 9.81 101.05 0.99 1.34 16 22 C -0.12 -2.32 6.78 -39.44 -0.27 -2.59 16 23 C -0.14 -2.07 5.12 -26.49 -0.14 -2.20 16 24 C 0.06 0.91 6.58 37.31 0.25 1.15 16 25 O -0.39 -6.56 10.77 -35.23 -0.38 -6.94 16 26 C 0.06 1.05 6.01 37.21 0.22 1.27 16 27 C -0.19 -3.38 3.71 -26.59 -0.10 -3.48 16 28 H 0.05 0.93 6.89 -51.93 -0.36 0.57 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 1.00 6.73 -51.93 -0.35 0.65 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 2.04 6.47 -51.93 -0.34 1.70 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.33 6.32 5.13 -39.29 -0.20 6.12 16 35 H 0.12 1.93 6.03 -52.49 -0.32 1.61 16 36 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.12 1.54 6.30 -52.49 -0.33 1.21 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 40 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 41 H 0.15 2.94 4.20 -52.48 -0.22 2.72 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 0.79 6.87 -51.93 -0.36 0.43 16 46 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.06 1.14 4.96 -51.94 -0.26 0.88 16 48 H 0.06 0.96 6.36 -51.93 -0.33 0.63 16 49 H 0.12 2.52 5.50 -51.93 -0.29 2.24 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -27.51 355.71 -8.28 -35.79 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -7.19 Total: 14.14 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -1.06 Total: -21.34 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.22 Total: -36.98 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.58 Total: -12.37 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.51 -8.28 -35.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160245.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.763 kcal (2) G-P(sol) polarization free energy of solvation -27.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds