Wall clock time and date at job start Tue Mar 31 2020 12:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45208 * 109.46959 * 2 1 4 4 C 1.34228 * 116.99972 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00261 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99458 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.46854 * 180.02562 * 6 4 3 8 8 C 1.50699 * 109.47231 * 180.02562 * 7 6 4 9 9 C 1.38241 * 119.99927 * 90.00108 * 8 7 6 10 10 C 1.38228 * 119.99675 * 179.97438 * 9 8 7 11 11 C 1.38232 * 120.00522 * 0.27042 * 10 9 8 12 12 C 1.50694 * 120.00460 * 179.73035 * 11 10 9 13 13 N 1.46897 * 109.47369 * 89.99909 * 12 11 10 14 14 C 1.46899 * 111.00528 * 174.80982 * 13 12 11 15 15 H 1.09001 * 109.46689 * 325.89943 * 14 13 12 16 16 C 1.50695 * 109.47538 * 205.90210 * 14 13 12 17 17 H 1.08007 * 119.99916 * 359.97438 * 16 14 13 18 18 C 1.37878 * 120.00445 * 179.97438 * 16 14 13 19 19 N 1.31517 * 119.99538 * 0.02562 * 18 16 14 20 20 Si 1.86794 * 120.00405 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47257 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46923 * 120.00164 * 20 18 16 23 23 H 1.48491 * 109.47411 * 240.00266 * 20 18 16 24 24 C 1.52999 * 109.47527 * 85.89543 * 14 13 12 25 25 C 1.53009 * 109.46513 * 65.16384 * 24 14 13 26 26 C 1.38241 * 119.99526 * 359.53698 * 11 10 9 27 27 C 1.38225 * 120.00059 * 0.39995 * 26 11 10 28 28 H 1.08996 * 109.47575 * 300.00374 * 1 2 3 29 29 H 1.09003 * 109.47200 * 60.00775 * 1 2 3 30 30 H 1.09000 * 109.46895 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47774 * 240.00129 * 2 1 3 32 32 H 1.09003 * 109.47200 * 119.99224 * 2 1 3 33 33 H 1.08999 * 109.47676 * 60.00359 * 6 4 3 34 34 H 1.08998 * 109.47363 * 299.99655 * 6 4 3 35 35 H 1.09005 * 109.47468 * 59.99946 * 7 6 4 36 36 H 1.09004 * 109.47090 * 300.00027 * 7 6 4 37 37 H 1.07997 * 120.00057 * 359.97178 * 9 8 7 38 38 H 1.08009 * 119.99713 * 180.02562 * 10 9 8 39 39 H 1.08998 * 109.47477 * 210.00093 * 12 11 10 40 40 H 1.09003 * 109.47464 * 330.00289 * 12 11 10 41 41 H 1.00904 * 111.00085 * 298.76263 * 13 12 11 42 42 H 0.97000 * 119.99490 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.47535 * 185.16099 * 24 14 13 44 44 H 1.09001 * 109.47221 * 305.16661 * 24 14 13 45 45 H 1.08998 * 109.46528 * 174.85038 * 25 24 14 46 46 H 1.09001 * 109.47027 * 294.84916 * 25 24 14 47 47 H 1.08997 * 109.47271 * 54.85390 * 25 24 14 48 48 H 1.08001 * 119.99885 * 180.23461 * 26 11 10 49 49 H 1.08007 * 120.00193 * 179.82981 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0000 7 6 5.4484 2.8576 0.0001 8 6 6.0244 4.2502 0.0002 9 6 6.2884 4.8889 1.1975 10 6 6.8172 6.1661 1.1975 11 6 7.0767 6.8068 0.0004 12 6 7.6475 8.2015 0.0005 13 7 9.1147 8.1301 -0.0024 14 6 9.7068 9.4688 -0.1264 15 1 9.0707 10.0903 -0.7568 16 6 11.0749 9.3574 -0.7482 17 1 11.4659 8.3889 -1.0233 18 6 11.8278 10.4918 -0.9659 19 7 11.3519 11.6711 -0.6305 20 14 13.5240 10.3537 -1.7360 21 1 13.8246 8.9272 -2.0186 22 1 13.5565 11.1265 -3.0036 23 1 14.5390 10.8976 -0.7985 24 6 9.8269 10.1040 1.2603 25 6 10.8204 9.3025 2.1039 26 6 6.8164 6.1666 -1.1968 27 6 6.2888 4.8889 -1.1969 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.5842 3.4703 0.8895 34 1 3.5850 3.4692 -0.8905 35 1 5.7846 2.3251 -0.8896 36 1 5.7844 2.3259 0.8904 37 1 6.0816 4.3901 2.1327 38 1 7.0239 6.6649 2.1329 39 1 7.3079 8.7331 -0.8884 40 1 7.3113 8.7317 0.8916 41 1 9.4555 7.6592 0.8224 42 1 11.8817 12.4692 -0.7833 43 1 10.1801 11.1303 1.1605 44 1 8.8516 10.1010 1.7470 45 1 10.9754 9.8057 3.0582 46 1 10.4235 8.3028 2.2805 47 1 11.7699 9.2280 1.5739 48 1 7.0227 6.6657 -2.1321 49 1 6.0828 4.3897 -2.1323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:27 Heat of formation + Delta-G solvation = -85.272575 kcal Electronic energy + Delta-G solvation = -25544.205637 eV Core-core repulsion = 21856.276742 eV Total energy + Delta-G solvation = -3687.928895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.82469 -39.36656 -37.14767 -36.53394 -34.51751 -32.63642 -32.09135 -30.99051 -30.75217 -29.39849 -26.82183 -25.50023 -23.81324 -23.22735 -22.75442 -22.53854 -21.12215 -20.28999 -19.29182 -18.09499 -17.14089 -16.68039 -16.42572 -15.64848 -15.51207 -14.91819 -14.87364 -14.70080 -14.34275 -13.94692 -13.55197 -13.52395 -13.29231 -13.23090 -13.05934 -12.79342 -12.52248 -12.40259 -12.29533 -12.04552 -11.91390 -11.82984 -11.54370 -11.33515 -11.07614 -10.93653 -10.90137 -10.76138 -10.73293 -10.54698 -10.50770 -9.96894 -9.79492 -9.56529 -8.97832 -8.73502 -8.38312 -8.33950 -7.20150 -5.96845 -3.98059 1.45232 1.59620 1.89331 2.34317 3.32155 3.40479 3.45851 3.89680 4.28576 4.46208 4.47629 4.53888 4.67782 4.72367 4.82103 4.91474 5.03448 5.15109 5.20019 5.24094 5.30865 5.31476 5.34932 5.40791 5.52421 5.59809 5.69863 5.82162 5.82392 5.97722 6.08342 6.13564 6.27743 6.32308 6.35430 6.37437 6.56667 6.60592 6.69678 6.89254 6.94579 7.18412 7.27723 7.28954 7.42662 7.52159 7.70271 7.90374 8.28683 8.54951 8.62518 9.08179 9.65605 11.10171 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.032000 B = 0.001824 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.780479 B =15348.398774 C =15633.174263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.462 3.538 5 O -0.509 6.509 6 C -0.108 4.108 7 C -0.064 4.064 8 C -0.100 4.100 9 C -0.116 4.116 10 C -0.115 4.115 11 C -0.062 4.062 12 C 0.093 3.907 13 N -0.678 5.678 14 C 0.214 3.786 15 H 0.033 0.967 16 C -0.486 4.486 17 H 0.062 0.938 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.286 1.286 24 C -0.146 4.146 25 C -0.130 4.130 26 C -0.096 4.096 27 C -0.116 4.116 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.026 0.974 41 H 0.328 0.672 42 H 0.258 0.742 43 H 0.093 0.907 44 H 0.010 0.990 45 H 0.023 0.977 46 H 0.027 0.973 47 H 0.069 0.931 48 H 0.124 0.876 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.925 -18.139 3.016 27.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.278 6.278 4 C 0.305 3.695 5 O -0.396 6.396 6 C -0.146 4.146 7 C -0.101 4.101 8 C -0.100 4.100 9 C -0.134 4.134 10 C -0.134 4.134 11 C -0.062 4.062 12 C -0.036 4.036 13 N -0.308 5.308 14 C 0.107 3.893 15 H 0.051 0.949 16 C -0.525 4.525 17 H 0.080 0.920 18 C -0.144 4.144 19 N -0.536 5.536 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.213 1.213 24 C -0.185 4.185 25 C -0.187 4.187 26 C -0.115 4.115 27 C -0.134 4.134 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.091 0.909 40 H 0.044 0.956 41 H 0.146 0.854 42 H 0.068 0.932 43 H 0.111 0.889 44 H 0.029 0.971 45 H 0.042 0.958 46 H 0.046 0.954 47 H 0.088 0.912 48 H 0.142 0.858 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.630 -18.392 2.323 27.000 hybrid contribution 0.810 0.290 0.554 1.023 sum -18.820 -18.102 2.876 26.271 Atomic orbital electron populations 1.21812 0.92564 1.03019 1.03618 1.23033 0.95430 0.80227 1.02629 1.86524 1.24798 1.32435 1.84046 1.23927 0.80430 0.93073 0.72089 1.90678 1.60371 1.43343 1.45251 1.21463 0.96380 0.90385 1.06335 1.20341 0.91412 0.93966 1.04414 1.19601 1.01468 0.95407 0.93554 1.20918 1.00244 0.95105 0.97127 1.21050 0.99559 0.94992 0.97795 1.20093 0.96431 0.96855 0.92851 1.20909 0.91216 0.91062 1.00450 1.60858 1.02038 1.23061 1.44884 1.19254 0.94930 0.83131 0.92027 0.94929 1.21106 0.99863 0.93170 1.38367 0.91961 1.24916 0.98142 0.95371 0.96003 1.69894 1.37505 0.97713 1.48520 0.86521 0.84384 0.78117 0.78889 1.19751 1.21216 1.21259 1.22110 0.94975 1.03828 0.97605 1.21599 1.01838 0.97520 0.97783 1.21064 0.97742 0.94539 0.98146 1.20991 1.00046 0.95210 0.97139 0.91423 0.91402 0.90216 0.91209 0.91226 0.87426 0.87378 0.90183 0.90253 0.86535 0.86432 0.90868 0.95569 0.85438 0.93206 0.88884 0.97117 0.95789 0.95412 0.91214 0.85805 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.29 37.16 0.38 -0.30 16 2 C 0.06 0.42 6.19 37.16 0.23 0.65 16 3 O -0.36 -3.20 10.22 -39.25 -0.40 -3.60 16 4 C 0.46 4.45 7.96 36.01 0.29 4.73 16 5 O -0.51 -6.31 15.73 -18.74 -0.29 -6.60 16 6 C -0.11 -0.84 5.79 -27.88 -0.16 -1.00 16 7 C -0.06 -0.60 4.63 -27.88 -0.13 -0.73 16 8 C -0.10 -1.12 5.13 -104.62 -0.54 -1.66 16 9 C -0.12 -1.36 9.70 -39.58 -0.38 -1.74 16 10 C -0.12 -1.56 9.70 -39.59 -0.38 -1.95 16 11 C -0.06 -0.94 5.44 -104.63 -0.57 -1.51 16 12 C 0.09 1.64 5.63 -4.98 -0.03 1.61 16 13 N -0.68 -14.14 6.19 -109.23 -0.68 -14.82 16 14 C 0.21 5.21 2.33 -68.87 -0.16 5.05 16 15 H 0.03 0.88 7.70 -51.93 -0.40 0.48 16 16 C -0.49 -13.06 7.25 -34.44 -0.25 -13.31 16 17 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 18 C 0.06 1.52 5.28 -17.82 -0.09 1.43 16 19 N -0.90 -25.12 11.38 55.43 0.63 -24.49 16 20 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.15 -3.37 5.51 -26.73 -0.15 -3.51 16 25 C -0.13 -2.75 9.40 37.16 0.35 -2.41 16 26 C -0.10 -1.37 9.70 -39.58 -0.38 -1.75 16 27 C -0.12 -1.40 9.70 -39.59 -0.38 -1.78 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.48 8.13 -51.93 -0.42 0.05 16 32 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 33 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 36 H 0.08 0.76 8.04 -51.93 -0.42 0.34 16 37 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 39 H 0.07 1.32 7.87 -51.93 -0.41 0.91 16 40 H 0.03 0.45 7.48 -51.93 -0.39 0.07 16 41 H 0.33 6.64 6.69 -39.29 -0.26 6.38 16 42 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.09 2.42 6.23 -51.93 -0.32 2.10 16 44 H 0.01 0.22 7.50 -51.93 -0.39 -0.17 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.03 0.52 6.63 -51.93 -0.34 0.18 16 47 H 0.07 1.63 6.85 -51.93 -0.36 1.27 16 48 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 49 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 400.56 15.07 6.04 6.04 Total: -1.00 -29.92 400.56 -10.42 -40.33 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -8.33 Total: 5.03 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -2.36 Total: -18.19 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: -0.05 Total: -39.30 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.70 Total: -10.20 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.92 -10.42 -40.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.940 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds