Wall clock time and date at job start Tue Mar 31 2020 12:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45208 * 109.46959 * 2 1 4 4 C 1.34228 * 116.99972 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00261 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99458 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.46854 * 180.02562 * 6 4 3 8 8 C 1.50699 * 109.47231 * 180.02562 * 7 6 4 9 9 C 1.38241 * 119.99927 * 90.00108 * 8 7 6 10 10 C 1.38228 * 119.99675 * 179.97438 * 9 8 7 11 11 C 1.38232 * 120.00522 * 0.27042 * 10 9 8 12 12 C 1.50694 * 120.00460 * 179.73035 * 11 10 9 13 13 N 1.46897 * 109.47369 * 89.99909 * 12 11 10 14 14 C 1.46899 * 111.00528 * 174.80982 * 13 12 11 15 15 H 1.09001 * 109.46689 * 325.89943 * 14 13 12 16 16 C 1.50695 * 109.47538 * 205.90210 * 14 13 12 17 17 H 1.08007 * 119.99916 * 359.97438 * 16 14 13 18 18 C 1.37878 * 120.00445 * 179.97438 * 16 14 13 19 19 N 1.31517 * 119.99538 * 0.02562 * 18 16 14 20 20 Si 1.86794 * 120.00405 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47257 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46923 * 120.00164 * 20 18 16 23 23 H 1.48491 * 109.47411 * 240.00266 * 20 18 16 24 24 C 1.52999 * 109.47527 * 85.89543 * 14 13 12 25 25 C 1.53009 * 109.46513 * 65.16384 * 24 14 13 26 26 C 1.38241 * 119.99526 * 359.53698 * 11 10 9 27 27 C 1.38225 * 120.00059 * 0.39995 * 26 11 10 28 28 H 1.08996 * 109.47575 * 300.00374 * 1 2 3 29 29 H 1.09003 * 109.47200 * 60.00775 * 1 2 3 30 30 H 1.09000 * 109.46895 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47774 * 240.00129 * 2 1 3 32 32 H 1.09003 * 109.47200 * 119.99224 * 2 1 3 33 33 H 1.08999 * 109.47676 * 60.00359 * 6 4 3 34 34 H 1.08998 * 109.47363 * 299.99655 * 6 4 3 35 35 H 1.09005 * 109.47468 * 59.99946 * 7 6 4 36 36 H 1.09004 * 109.47090 * 300.00027 * 7 6 4 37 37 H 1.07997 * 120.00057 * 359.97178 * 9 8 7 38 38 H 1.08009 * 119.99713 * 180.02562 * 10 9 8 39 39 H 1.08998 * 109.47477 * 210.00093 * 12 11 10 40 40 H 1.09003 * 109.47464 * 330.00289 * 12 11 10 41 41 H 1.00904 * 111.00085 * 298.76263 * 13 12 11 42 42 H 0.97000 * 119.99490 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.47535 * 185.16099 * 24 14 13 44 44 H 1.09001 * 109.47221 * 305.16661 * 24 14 13 45 45 H 1.08998 * 109.46528 * 174.85038 * 25 24 14 46 46 H 1.09001 * 109.47027 * 294.84916 * 25 24 14 47 47 H 1.08997 * 109.47271 * 54.85390 * 25 24 14 48 48 H 1.08001 * 119.99885 * 180.23461 * 26 11 10 49 49 H 1.08007 * 120.00193 * 179.82981 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0000 7 6 5.4484 2.8576 0.0001 8 6 6.0244 4.2502 0.0002 9 6 6.2884 4.8889 1.1975 10 6 6.8172 6.1661 1.1975 11 6 7.0767 6.8068 0.0004 12 6 7.6475 8.2015 0.0005 13 7 9.1147 8.1301 -0.0024 14 6 9.7068 9.4688 -0.1264 15 1 9.0707 10.0903 -0.7568 16 6 11.0749 9.3574 -0.7482 17 1 11.4659 8.3889 -1.0233 18 6 11.8278 10.4918 -0.9659 19 7 11.3519 11.6711 -0.6305 20 14 13.5240 10.3537 -1.7360 21 1 13.8246 8.9272 -2.0186 22 1 13.5565 11.1265 -3.0036 23 1 14.5390 10.8976 -0.7985 24 6 9.8269 10.1040 1.2603 25 6 10.8204 9.3025 2.1039 26 6 6.8164 6.1666 -1.1968 27 6 6.2888 4.8889 -1.1969 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.5842 3.4703 0.8895 34 1 3.5850 3.4692 -0.8905 35 1 5.7846 2.3251 -0.8896 36 1 5.7844 2.3259 0.8904 37 1 6.0816 4.3901 2.1327 38 1 7.0239 6.6649 2.1329 39 1 7.3079 8.7331 -0.8884 40 1 7.3113 8.7317 0.8916 41 1 9.4555 7.6592 0.8224 42 1 11.8817 12.4692 -0.7833 43 1 10.1801 11.1303 1.1605 44 1 8.8516 10.1010 1.7470 45 1 10.9754 9.8057 3.0582 46 1 10.4235 8.3028 2.2805 47 1 11.7699 9.2280 1.5739 48 1 7.0227 6.6657 -2.1321 49 1 6.0828 4.3897 -2.1323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255161288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:26 Heat of formation + Delta-G solvation = -99.856102 kcal Electronic energy + Delta-G solvation = -25544.838026 eV Core-core repulsion = 21856.276742 eV Total energy + Delta-G solvation = -3688.561284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.55299 -40.38753 -38.31199 -37.78033 -35.63646 -34.20642 -32.86176 -32.40044 -31.74344 -30.63871 -28.44814 -26.80503 -25.19833 -24.59113 -23.59116 -23.53339 -21.93742 -21.27378 -21.12317 -18.81529 -18.27203 -17.81090 -17.37053 -16.98086 -16.71760 -16.52673 -15.99478 -15.81250 -15.43253 -15.22243 -14.72467 -14.57187 -14.32854 -14.29285 -14.11316 -13.91726 -13.79739 -13.53351 -13.48206 -13.12028 -12.87451 -12.83934 -12.68136 -12.59814 -12.46653 -12.42963 -12.18780 -12.06739 -11.79656 -11.69703 -11.57449 -11.51214 -11.50561 -11.39959 -10.94983 -10.42789 -9.72999 -9.44537 -8.89552 -8.04727 -6.12789 0.43890 0.59911 1.17291 1.41514 1.44619 1.55714 1.71859 2.46196 2.88111 3.23908 3.61726 3.81749 3.91539 3.99093 4.00818 4.07736 4.09696 4.17506 4.23855 4.26787 4.36260 4.45940 4.55468 4.61452 4.61713 4.65909 4.71257 4.78814 4.83841 4.87790 4.92550 4.97472 5.07667 5.11252 5.15904 5.24245 5.27731 5.37279 5.43184 5.48688 5.58166 5.71272 5.74628 5.75386 5.84397 5.87388 6.18625 6.33345 6.69350 6.72247 6.85666 7.00013 7.54855 9.00589 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.032000 B = 0.001824 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.780479 B =15348.398774 C =15633.174263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.364 6.364 4 C 0.464 3.536 5 O -0.542 6.542 6 C -0.102 4.102 7 C -0.059 4.059 8 C -0.089 4.089 9 C -0.113 4.113 10 C -0.121 4.121 11 C -0.083 4.083 12 C 0.099 3.901 13 N -0.681 5.681 14 C 0.220 3.780 15 H -0.002 1.002 16 C -0.497 4.497 17 H 0.050 0.950 18 C 0.013 3.987 19 N -0.920 5.920 20 Si 0.950 3.050 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.281 1.281 24 C -0.138 4.138 25 C -0.121 4.121 26 C -0.112 4.112 27 C -0.116 4.116 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.143 0.857 38 H 0.125 0.875 39 H 0.059 0.941 40 H 0.029 0.971 41 H 0.332 0.668 42 H 0.259 0.741 43 H 0.062 0.938 44 H 0.026 0.974 45 H 0.042 0.958 46 H 0.048 0.952 47 H 0.044 0.956 48 H 0.115 0.885 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.942 -19.937 3.792 29.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.281 6.281 4 C 0.309 3.691 5 O -0.432 6.432 6 C -0.140 4.140 7 C -0.096 4.096 8 C -0.089 4.089 9 C -0.131 4.131 10 C -0.139 4.139 11 C -0.084 4.084 12 C -0.030 4.030 13 N -0.312 5.312 14 C 0.111 3.889 15 H 0.016 0.984 16 C -0.536 4.536 17 H 0.068 0.932 18 C -0.185 4.185 19 N -0.561 5.561 20 Si 0.777 3.223 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.207 1.207 24 C -0.178 4.178 25 C -0.178 4.178 26 C -0.130 4.130 27 C -0.134 4.134 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.161 0.839 38 H 0.143 0.857 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.151 0.849 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.134 0.866 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -20.671 -20.196 3.102 29.065 hybrid contribution 1.019 0.767 0.306 1.311 sum -19.652 -19.429 3.407 27.844 Atomic orbital electron populations 1.21826 0.90633 1.04291 1.03713 1.23263 0.96978 0.79371 1.02491 1.86526 1.24368 1.33581 1.83661 1.24235 0.80470 0.93328 0.71042 1.90668 1.61044 1.44501 1.46955 1.21460 0.95047 0.89562 1.07887 1.20281 0.92495 0.92465 1.04366 1.19808 1.00124 0.95916 0.93075 1.21203 0.99125 0.94335 0.98459 1.21167 0.99667 0.95784 0.97306 1.19898 0.98461 0.95838 0.94166 1.20823 0.89142 0.93113 0.99876 1.60720 1.04181 1.21026 1.45291 1.19001 0.93412 0.84442 0.92013 0.98377 1.21299 1.01056 0.92638 1.38611 0.93151 1.25579 1.01288 0.95124 0.96478 1.70017 1.38624 0.98163 1.49273 0.85617 0.80612 0.78005 0.78062 1.19530 1.21041 1.20720 1.21953 0.96251 1.02172 0.97449 1.21481 0.99950 0.98589 0.97825 1.21113 0.98730 0.95635 0.97562 1.21203 0.99270 0.94328 0.98565 0.91265 0.91309 0.88382 0.91434 0.91369 0.85702 0.85899 0.90469 0.90208 0.83949 0.85735 0.92246 0.95267 0.84935 0.93228 0.91971 0.95514 0.93888 0.93298 0.93662 0.86645 0.84403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.29 71.98 0.74 -0.31 16 2 C 0.05 0.66 6.19 71.98 0.45 1.10 16 3 O -0.36 -5.85 10.22 -51.40 -0.53 -6.38 16 4 C 0.46 8.12 7.96 71.24 0.57 8.69 16 5 O -0.54 -12.79 15.73 21.98 0.35 -12.45 16 6 C -0.10 -1.31 5.79 29.85 0.17 -1.13 16 7 C -0.06 -0.95 4.63 29.85 0.14 -0.81 16 8 C -0.09 -1.77 5.13 -19.86 -0.10 -1.87 16 9 C -0.11 -2.35 9.70 22.27 0.22 -2.13 16 10 C -0.12 -3.06 9.70 22.27 0.22 -2.84 16 11 C -0.08 -2.49 5.44 -19.87 -0.11 -2.60 16 12 C 0.10 3.56 5.63 85.56 0.48 4.04 16 13 N -0.68 -28.74 6.19 -499.49 -3.09 -31.83 16 14 C 0.22 10.97 2.33 44.17 0.10 11.07 16 15 H 0.00 -0.10 7.70 -2.39 -0.02 -0.11 16 16 C -0.50 -27.23 7.25 25.60 0.19 -27.05 16 17 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 18 C 0.01 0.74 5.28 84.65 0.45 1.18 16 19 N -0.92 -52.58 11.38 21.45 0.24 -52.34 16 20 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 24 C -0.14 -6.45 5.51 30.60 0.17 -6.28 16 25 C -0.12 -5.03 9.40 71.99 0.68 -4.35 16 26 C -0.11 -3.12 9.70 22.27 0.22 -2.91 16 27 C -0.12 -2.59 9.70 22.27 0.22 -2.37 16 28 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.07 0.86 8.13 -2.39 -0.02 0.85 16 32 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 33 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.32 8.04 -2.38 -0.02 1.31 16 36 H 0.08 1.32 8.04 -2.39 -0.02 1.30 16 37 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.12 2.92 8.06 -2.91 -0.02 2.90 16 39 H 0.06 2.24 7.87 -2.39 -0.02 2.22 16 40 H 0.03 1.01 7.48 -2.39 -0.02 1.00 16 41 H 0.33 13.32 6.69 -89.69 -0.60 12.72 16 42 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 43 H 0.06 3.30 6.23 -2.39 -0.01 3.28 16 44 H 0.03 1.12 7.50 -2.39 -0.02 1.11 16 45 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.05 1.79 6.63 -2.39 -0.02 1.77 16 47 H 0.04 2.09 6.85 -2.39 -0.02 2.07 16 48 H 0.12 3.32 8.06 -2.91 -0.02 3.29 16 49 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -65.01 400.56 4.10 -60.91 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.32 Total: 24.52 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 4.78 Total: -28.57 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -2.85 Total: -84.17 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.18 Total: -18.82 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -65.01 4.10 -60.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.943 kcal (2) G-P(sol) polarization free energy of solvation -65.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds