Wall clock time and date at job start Tue Mar 31 2020 12:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47048 * 2 1 4 4 H 1.09004 * 109.46829 * 56.98255 * 3 2 1 5 5 C 1.50703 * 109.47320 * 176.98090 * 3 2 1 6 6 H 1.07994 * 119.99861 * 114.63267 * 5 3 2 7 7 C 1.37882 * 120.00014 * 294.63680 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86789 * 120.00064 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47387 * 59.99909 * 9 7 5 11 11 H 1.48500 * 109.47323 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47334 * 299.99928 * 9 7 5 13 13 N 1.46898 * 109.47375 * 296.97960 * 3 2 1 14 14 C 1.46900 * 111.00126 * 151.85796 * 13 3 2 15 15 C 1.50699 * 109.54465 * 305.69244 * 14 13 3 16 16 C 1.38272 * 119.94743 * 139.75920 * 15 14 13 17 17 C 1.38136 * 120.05384 * 179.72383 * 16 15 14 18 18 C 1.38729 * 119.94716 * 0.52624 * 17 16 15 19 19 O 1.35901 * 120.05419 * 179.72734 * 18 17 16 20 20 C 1.42896 * 117.00413 * 0.02562 * 19 18 17 21 21 C 1.38727 * 119.88900 * 359.74152 * 18 17 16 22 22 C 1.38150 * 119.94453 * 0.02562 * 21 18 17 23 23 C 1.53174 * 109.54620 * 185.51205 * 14 13 3 24 24 C 1.53282 * 109.06191 * 297.03268 * 23 14 13 25 25 O 1.42903 * 109.46076 * 302.44288 * 24 23 14 26 26 C 1.42905 * 114.09924 * 61.15929 * 25 24 23 27 27 C 1.53093 * 109.41241 * 298.84298 * 26 25 24 28 28 H 1.09007 * 109.47204 * 182.93394 * 1 2 3 29 29 H 1.09005 * 109.47127 * 302.93087 * 1 2 3 30 30 H 1.08995 * 109.47514 * 62.93830 * 1 2 3 31 31 H 1.09000 * 109.47383 * 240.00360 * 2 1 3 32 32 H 1.09001 * 109.47294 * 120.00374 * 2 1 3 33 33 H 0.97004 * 120.00050 * 180.02562 * 8 7 5 34 34 H 1.00896 * 111.00486 * 275.81573 * 13 3 2 35 35 H 1.08001 * 119.96682 * 359.97243 * 16 15 14 36 36 H 1.07999 * 120.02764 * 180.29425 * 17 16 15 37 37 H 1.08997 * 109.47457 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.46941 * 299.99809 * 20 19 18 39 39 H 1.08998 * 109.46921 * 59.99981 * 20 19 18 40 40 H 1.07998 * 120.02998 * 179.97438 * 21 18 17 41 41 H 1.08001 * 119.97313 * 179.97438 * 22 21 18 42 42 H 1.09001 * 109.52227 * 57.01936 * 23 14 13 43 43 H 1.08999 * 109.52621 * 177.21471 * 23 14 13 44 44 H 1.08997 * 109.46201 * 182.44914 * 24 23 14 45 45 H 1.08997 * 109.46986 * 62.44563 * 24 23 14 46 46 H 1.08996 * 109.48546 * 178.85909 * 26 25 24 47 47 H 1.09001 * 109.48717 * 58.82769 * 26 25 24 48 48 H 1.08994 * 109.52414 * 297.70139 * 27 26 25 49 49 H 1.09006 * 109.57006 * 177.54500 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6330 1.9717 0.8617 5 6 3.5451 1.4432 0.0748 6 1 4.1267 1.8183 -0.7542 7 6 4.1796 0.9649 1.2017 8 7 3.4711 0.5085 2.2114 9 14 6.0452 0.9651 1.2942 10 1 6.5471 2.3566 1.1632 11 1 6.4761 0.4049 2.6001 12 1 6.5955 0.1347 0.1929 13 7 1.6108 2.1136 -1.2342 14 6 1.4659 3.5603 -1.0238 15 6 0.5411 3.8104 0.1394 16 6 0.8258 4.8171 1.0435 17 6 -0.0234 5.0521 2.1074 18 6 -1.1569 4.2700 2.2745 19 8 -1.9910 4.4957 3.3234 20 6 -1.6397 5.5554 4.2154 21 6 -1.4375 3.2570 1.3692 22 6 -0.5876 3.0291 0.3041 23 6 0.8876 4.2064 -2.2865 24 6 1.8735 4.0134 -3.4441 25 8 3.1373 4.5804 -3.0927 26 6 3.7464 3.9830 -1.9462 27 6 2.8377 4.1751 -0.7292 28 1 -0.3634 -1.0264 0.0526 29 1 -0.3634 0.5587 0.8626 30 1 -0.3634 0.4675 -0.9151 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.9175 0.1723 3.0044 34 1 2.2488 1.9205 -1.9916 35 1 1.7108 5.4228 0.9155 36 1 0.1969 5.8416 2.8106 37 1 -2.3866 5.6277 5.0058 38 1 -0.6638 5.3510 4.6559 39 1 -1.6003 6.4954 3.6650 40 1 -2.3191 2.6465 1.4973 41 1 -0.8054 2.2403 -0.4007 42 1 -0.0640 3.7356 -2.5334 43 1 0.7340 5.2715 -2.1130 44 1 1.4884 4.5085 -4.3355 45 1 1.9957 2.9489 -3.6437 46 1 4.7102 4.4561 -1.7585 47 1 3.8930 2.9179 -2.1259 48 1 2.7234 5.2395 -0.5243 49 1 3.2791 3.6827 0.1374 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162211.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:14 Heat of formation + Delta-G solvation = -70.811615 kcal Electronic energy + Delta-G solvation = -29459.025859 eV Core-core repulsion = 25771.724039 eV Total energy + Delta-G solvation = -3687.301821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.68225 -40.47260 -38.47751 -37.18488 -35.09646 -33.61359 -32.29586 -31.68966 -30.96304 -30.32622 -28.16877 -27.98554 -25.18735 -24.77130 -24.47726 -23.21657 -22.27688 -21.36520 -19.73155 -19.08353 -18.64528 -17.44744 -17.15997 -16.87399 -16.58283 -16.49181 -16.13887 -15.86831 -15.51004 -15.22276 -15.11038 -14.66325 -14.59299 -14.46200 -14.09026 -13.82995 -13.45398 -13.36175 -13.16261 -13.05688 -12.89252 -12.78365 -12.59348 -12.44401 -12.28794 -12.18156 -11.98528 -11.98088 -11.69535 -11.61021 -11.40023 -11.28913 -10.98959 -10.72315 -10.36588 -10.27378 -9.75954 -8.97190 -8.86019 -7.98229 -6.12236 0.54135 0.59794 1.38643 1.41607 1.45591 2.44029 2.45410 2.92578 3.05027 3.25788 3.60245 3.83621 3.96179 4.07262 4.10856 4.19667 4.23889 4.36633 4.37634 4.39486 4.55705 4.60594 4.66009 4.68136 4.73287 4.76431 4.81281 4.85982 4.90396 4.93668 5.01059 5.01987 5.20198 5.21797 5.30917 5.36181 5.43562 5.48537 5.52164 5.54644 5.64181 5.72259 5.82762 5.94661 5.96674 6.17726 6.29138 6.36300 6.48417 6.53962 6.94677 7.13124 7.55303 9.00462 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009879 B = 0.006107 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.692768 B = 4583.451517 C = 5663.799055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 C 0.225 3.775 4 H 0.022 0.978 5 C -0.538 4.538 6 H 0.063 0.937 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 0.929 3.071 10 H -0.273 1.273 11 H -0.294 1.294 12 H -0.275 1.275 13 N -0.666 5.666 14 C 0.167 3.833 15 C -0.097 4.097 16 C -0.092 4.092 17 C -0.214 4.214 18 C 0.108 3.892 19 O -0.337 6.337 20 C 0.020 3.980 21 C -0.170 4.170 22 C -0.058 4.058 23 C -0.128 4.128 24 C 0.059 3.941 25 O -0.399 6.399 26 C 0.066 3.934 27 C -0.177 4.177 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.043 0.957 33 H 0.255 0.745 34 H 0.329 0.671 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.121 0.879 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.133 0.867 41 H 0.142 0.858 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.113 0.887 45 H 0.053 0.947 46 H 0.089 0.911 47 H 0.049 0.951 48 H 0.065 0.935 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.129 9.742 -3.832 13.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.138 4.138 3 C 0.116 3.884 4 H 0.040 0.960 5 C -0.577 4.577 6 H 0.081 0.919 7 C -0.176 4.176 8 N -0.552 5.552 9 Si 0.757 3.243 10 H -0.198 1.198 11 H -0.221 1.221 12 H -0.200 1.200 13 N -0.296 5.296 14 C 0.075 3.925 15 C -0.098 4.098 16 C -0.111 4.111 17 C -0.233 4.233 18 C 0.063 3.937 19 O -0.251 6.251 20 C -0.074 4.074 21 C -0.189 4.189 22 C -0.076 4.076 23 C -0.166 4.166 24 C -0.018 4.018 25 O -0.318 6.318 26 C -0.010 4.010 27 C -0.216 4.216 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.159 0.841 37 H 0.139 0.861 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.151 0.849 41 H 0.159 0.841 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.131 0.869 45 H 0.072 0.928 46 H 0.107 0.893 47 H 0.067 0.933 48 H 0.083 0.917 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.877 9.576 -3.599 13.544 hybrid contribution 2.394 -0.168 1.058 2.622 sum -6.483 9.408 -2.541 11.705 Atomic orbital electron populations 1.21719 0.96533 0.99353 1.00800 1.21321 0.94406 0.99111 0.98954 1.18915 0.91189 0.90606 0.87659 0.96034 1.22257 0.93975 1.40165 1.01330 0.91918 1.25505 1.00594 0.95551 0.95991 1.70046 1.36004 1.42902 1.06205 0.86059 0.83108 0.78344 0.76805 1.19830 1.22056 1.19998 1.60976 1.53533 1.06573 1.08517 1.19581 0.91466 0.88936 0.92473 1.19676 0.96259 0.96625 0.97216 1.21087 0.98561 0.97718 0.93719 1.21298 0.96529 1.03643 1.01787 1.19121 0.90424 0.95597 0.88562 1.86005 1.48617 1.54071 1.36425 1.23281 1.02777 0.88640 0.92707 1.20595 1.02717 0.99495 0.96096 1.21099 0.92550 0.97353 0.96641 1.22192 0.99788 1.00664 0.93928 1.22753 0.82906 0.98699 0.97427 1.87841 1.35197 1.61841 1.46900 1.22555 0.95913 0.97678 0.84863 1.22923 0.97794 1.00895 1.00007 0.94471 0.94723 0.91559 0.95461 0.93866 0.93558 0.85198 0.85484 0.84070 0.86068 0.92858 0.91584 0.84941 0.84061 0.89529 0.91114 0.86906 0.92828 0.89266 0.93280 0.91666 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 8.38 71.98 0.60 -4.22 16 2 C -0.10 -4.51 5.48 30.59 0.17 -4.34 16 3 C 0.22 10.15 1.09 44.17 0.05 10.20 16 4 H 0.02 1.12 5.82 -2.39 -0.01 1.11 16 5 C -0.54 -26.53 5.96 25.60 0.15 -26.37 16 6 H 0.06 2.98 4.99 -2.91 -0.01 2.97 16 7 C 0.02 1.22 5.31 84.66 0.45 1.67 16 8 N -0.91 -51.27 11.71 21.45 0.25 -51.02 16 9 Si 0.93 42.25 29.54 68.60 2.03 44.27 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 N -0.67 -24.42 4.63 -455.19 -2.11 -26.53 16 14 C 0.17 5.57 0.51 2.90 0.00 5.57 16 15 C -0.10 -3.39 3.22 -19.85 -0.06 -3.46 16 16 C -0.09 -3.12 9.11 22.25 0.20 -2.92 16 17 C -0.21 -6.71 9.04 22.36 0.20 -6.50 16 18 C 0.11 3.52 6.69 22.50 0.15 3.67 16 19 O -0.34 -9.87 10.50 -92.43 -0.97 -10.84 16 20 C 0.02 0.40 9.81 113.37 1.11 1.51 16 21 C -0.17 -5.69 9.99 22.37 0.22 -5.47 16 22 C -0.06 -2.01 6.89 22.26 0.15 -1.85 16 23 C -0.13 -3.49 5.12 30.75 0.16 -3.33 16 24 C 0.06 1.51 6.58 72.08 0.47 1.99 16 25 O -0.40 -12.31 10.77 -148.98 -1.60 -13.91 16 26 C 0.07 2.20 6.11 72.01 0.44 2.64 16 27 C -0.18 -6.22 3.46 30.69 0.11 -6.11 16 28 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.03 1.36 6.91 -2.38 -0.02 1.34 16 30 H 0.07 2.28 6.58 -2.39 -0.02 2.26 16 31 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.04 2.27 6.45 -2.39 -0.02 2.26 16 33 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 34 H 0.33 12.12 5.07 -89.70 -0.45 11.66 16 35 H 0.13 4.04 5.90 -2.91 -0.02 4.03 16 36 H 0.14 3.63 6.30 -2.91 -0.02 3.61 16 37 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.05 1.06 7.66 -2.39 -0.02 1.04 16 39 H 0.07 1.12 7.66 -2.39 -0.02 1.10 16 40 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 41 H 0.14 4.74 5.19 -2.91 -0.02 4.72 16 42 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.05 1.41 6.86 -2.39 -0.02 1.39 16 46 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 47 H 0.05 1.76 4.85 -2.39 -0.01 1.74 16 48 H 0.06 2.13 6.51 -2.39 -0.02 2.11 16 49 H 0.08 3.27 5.71 -2.38 -0.01 3.26 16 Total: -1.00 -58.70 357.05 2.69 -56.01 By element: Atomic # 1 Polarization: 38.83 SS G_CDS: 0.52 Total: 39.34 kcal Atomic # 6 Polarization: -41.91 SS G_CDS: 4.58 Total: -37.33 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -1.86 Total: -77.55 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -2.57 Total: -24.75 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -58.70 2.69 -56.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162211.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.803 kcal (2) G-P(sol) polarization free energy of solvation -58.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds