Wall clock time and date at job start Tue Mar 31 2020 12:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46843 * 2 1 4 4 H 1.08993 * 109.47507 * 305.64174 * 3 2 1 5 5 C 1.50706 * 109.46953 * 185.64256 * 3 2 1 6 6 H 1.07997 * 119.99811 * 240.00065 * 5 3 2 7 7 C 1.37875 * 119.99679 * 60.00214 * 5 3 2 8 8 N 1.31513 * 120.00418 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99789 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47582 * 89.99701 * 9 7 5 11 11 H 1.48498 * 109.47230 * 210.00039 * 9 7 5 12 12 H 1.48509 * 109.47057 * 329.99598 * 9 7 5 13 13 N 1.46903 * 109.47206 * 65.64540 * 3 2 1 14 14 C 1.46897 * 111.00019 * 204.33431 * 13 3 2 15 15 H 1.08996 * 109.68248 * 324.93395 * 14 13 3 16 16 C 1.53330 * 109.68334 * 204.37196 * 14 13 3 17 17 C 1.52724 * 108.37027 * 170.37330 * 16 14 13 18 18 C 1.50650 * 110.60309 * 51.11981 * 17 16 14 19 19 C 1.38959 * 117.65479 * 162.69666 * 18 17 16 20 20 C 1.38228 * 120.58508 * 179.88826 * 19 18 17 21 21 O 1.35995 * 120.19443 * 179.81762 * 20 19 18 22 22 C 1.42903 * 117.00036 * 359.71778 * 21 20 19 23 23 C 1.39202 * 119.61458 * 359.53823 * 20 19 18 24 24 O 1.36002 * 120.19294 * 180.37642 * 23 20 19 25 25 C 1.42897 * 116.99891 * 180.02562 * 24 23 20 26 26 C 1.38221 * 119.61445 * 0.35766 * 23 20 19 27 27 C 1.37691 * 122.54587 * 342.27345 * 18 17 16 28 28 C 1.50662 * 122.54724 * 0.62869 * 27 18 17 29 29 H 1.08995 * 109.47182 * 293.71066 * 1 2 3 30 30 H 1.08996 * 109.46941 * 53.71696 * 1 2 3 31 31 H 1.09006 * 109.47193 * 173.71289 * 1 2 3 32 32 H 1.08996 * 109.46930 * 240.00283 * 2 1 3 33 33 H 1.08992 * 109.46919 * 120.00209 * 2 1 3 34 34 H 0.96993 * 120.00233 * 180.02562 * 8 7 5 35 35 H 1.00901 * 110.99940 * 328.29091 * 13 3 2 36 36 H 1.09002 * 109.68367 * 290.09528 * 16 14 13 37 37 H 1.09004 * 109.68446 * 50.61961 * 16 14 13 38 38 H 1.09008 * 109.24961 * 171.40573 * 17 16 14 39 39 H 1.08996 * 109.25021 * 290.86263 * 17 16 14 40 40 H 1.08002 * 119.70719 * 359.64826 * 19 18 17 41 41 H 1.09001 * 109.47581 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.47010 * 300.00698 * 22 21 20 43 43 H 1.09006 * 109.46990 * 59.99806 * 22 21 20 44 44 H 1.09000 * 109.47123 * 180.02562 * 25 24 23 45 45 H 1.09003 * 109.47258 * 299.99993 * 25 24 23 46 46 H 1.08995 * 109.47304 * 60.00172 * 25 24 23 47 47 H 1.08002 * 119.71217 * 179.97438 * 26 23 20 48 48 H 1.08998 * 109.24614 * 102.57169 * 28 27 18 49 49 H 1.08998 * 109.24964 * 222.02567 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9847 -0.8351 5 6 3.5405 1.4448 -0.1397 6 1 4.1540 1.8865 0.6316 7 6 4.1301 0.8831 -1.2523 8 7 3.3831 0.3448 -2.1913 9 14 5.9901 0.8853 -1.4251 10 1 6.5456 -0.3490 -0.8143 11 1 6.3535 0.9321 -2.8642 12 1 6.5500 2.0747 -0.7343 13 7 1.6647 2.0945 1.2618 14 6 1.5994 3.5533 1.1014 15 1 2.3679 3.8804 0.4011 16 6 1.8143 4.2322 2.4593 17 6 1.9815 5.7323 2.2263 18 6 0.8567 6.2656 1.3777 19 6 0.6472 7.6393 1.3737 20 6 -0.3664 8.1939 0.6149 21 8 -0.5667 9.5391 0.6198 22 6 0.3049 10.3218 1.4382 23 6 -1.1771 7.3682 -0.1587 24 8 -2.1729 7.9022 -0.9157 25 6 -2.9639 6.9922 -1.6827 26 6 -0.9640 6.0026 -0.1535 27 6 0.0526 5.4485 0.6151 28 6 0.2218 3.9520 0.5765 29 1 -0.3633 0.4132 0.9409 30 1 -0.3633 0.6081 -0.8284 31 1 -0.3634 -1.0215 -0.1125 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.7979 -0.0507 -2.9738 35 1 0.7914 1.7297 1.6115 36 1 0.9503 4.0541 3.0996 37 1 2.7108 3.8315 2.9325 38 1 1.9821 6.2473 3.1870 39 1 2.9298 5.9139 1.7206 40 1 1.2795 8.2789 1.9717 41 1 0.0376 11.3749 1.3502 42 1 0.2073 10.0074 2.4773 43 1 1.3350 10.1803 1.1110 44 1 -3.7193 7.5471 -2.2389 45 1 -2.3231 6.4525 -2.3801 46 1 -3.4521 6.2829 -1.0146 47 1 -1.5924 5.3604 -0.7529 48 1 -0.5466 3.4874 1.1945 49 1 0.1150 3.6046 -0.4511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164173.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:11 Heat of formation + Delta-G solvation = -80.989902 kcal Electronic energy + Delta-G solvation = -27619.603887 eV Core-core repulsion = 23931.860703 eV Total energy + Delta-G solvation = -3687.743184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.77742 -39.82741 -39.41066 -37.89249 -35.66998 -33.99150 -33.22416 -31.97099 -30.36934 -29.11259 -28.39955 -28.07706 -27.25633 -24.76212 -24.02773 -22.98441 -22.76432 -21.48111 -20.48136 -19.19551 -18.28583 -17.88209 -17.77477 -17.04170 -16.76641 -16.15322 -16.11866 -15.96706 -15.51028 -15.45580 -15.26725 -14.95209 -14.72636 -14.43244 -14.25862 -13.83325 -13.61525 -13.50918 -13.21495 -13.11765 -13.06070 -12.87444 -12.78953 -12.50661 -12.46342 -12.30799 -12.08763 -12.03372 -11.87071 -11.81707 -11.53914 -11.46631 -11.30066 -11.11530 -10.93068 -10.40392 -9.58227 -8.92785 -8.67580 -8.04261 -6.15536 0.26147 0.40775 1.41555 1.42514 1.52297 2.33617 2.36506 2.45270 2.64180 3.20820 3.54599 3.68075 3.87864 3.97791 3.99522 4.20358 4.22893 4.28903 4.35220 4.35892 4.42873 4.48645 4.52123 4.54420 4.59806 4.65655 4.66812 4.69188 4.72819 4.74924 4.77429 4.87224 5.01667 5.06549 5.12123 5.17272 5.20665 5.28492 5.38179 5.45269 5.50002 5.62703 5.68154 5.77707 5.82513 5.94536 6.09677 6.40919 6.57430 6.60631 6.99062 7.08179 7.53539 8.98585 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014168 B = 0.003398 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.760267 B = 8238.271603 C = 8823.925939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 C 0.228 3.772 4 H -0.031 1.031 5 C -0.509 4.509 6 H 0.049 0.951 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.679 5.679 14 C 0.098 3.902 15 H 0.047 0.953 16 C -0.098 4.098 17 C -0.071 4.071 18 C -0.076 4.076 19 C -0.169 4.169 20 C 0.083 3.917 21 O -0.330 6.330 22 C 0.017 3.983 23 C 0.079 3.921 24 O -0.328 6.328 25 C 0.019 3.981 26 C -0.178 4.178 27 C -0.076 4.076 28 C -0.094 4.094 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.259 0.741 35 H 0.328 0.672 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.160 0.840 41 H 0.118 0.882 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.122 0.878 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.141 0.859 48 H 0.084 0.916 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.208 15.676 7.658 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.161 4.161 3 C 0.120 3.880 4 H -0.013 1.013 5 C -0.548 4.548 6 H 0.068 0.932 7 C -0.188 4.188 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.196 1.196 13 N -0.309 5.309 14 C -0.013 4.013 15 H 0.065 0.935 16 C -0.136 4.136 17 C -0.109 4.109 18 C -0.076 4.076 19 C -0.188 4.188 20 C 0.037 3.963 21 O -0.244 6.244 22 C -0.077 4.077 23 C 0.034 3.966 24 O -0.242 6.242 25 C -0.075 4.075 26 C -0.197 4.197 27 C -0.077 4.077 28 C -0.133 4.133 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.147 0.853 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.177 0.823 41 H 0.136 0.864 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.140 0.860 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.159 0.841 48 H 0.102 0.898 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.736 15.890 7.604 20.127 hybrid contribution 0.297 -0.494 -1.222 1.351 sum -9.439 15.396 6.382 19.154 Atomic orbital electron populations 1.21741 0.96279 1.00989 1.00521 1.21594 0.94226 0.99167 1.01070 1.18884 0.93717 0.90439 0.84939 1.01311 1.21510 0.93075 1.36217 1.03980 0.93237 1.25645 1.01992 0.95520 0.95688 1.69997 1.36063 1.40099 1.09898 0.85661 0.81231 0.78484 0.76876 1.20202 1.21184 1.19635 1.60723 1.36225 1.03102 1.30897 1.21394 0.94369 0.88457 0.97032 0.93451 1.21463 1.02453 0.93760 0.95888 1.20454 0.95475 0.95556 0.99386 1.19589 0.97441 0.92381 0.98204 1.21245 0.99181 0.95537 1.02820 1.18330 0.96222 0.83393 0.98313 1.86121 1.57388 1.14479 1.66424 1.23351 0.93898 0.95956 0.94506 1.18343 0.91674 0.90986 0.95602 1.86105 1.43327 1.36978 1.57793 1.23297 0.94727 0.94662 0.94839 1.21182 1.01731 0.92775 1.03992 1.19417 0.95652 0.95391 0.97201 1.21084 0.99283 0.91729 1.01166 0.92195 0.94566 0.92649 0.91637 0.94550 0.93230 0.85301 0.91148 0.91239 0.88142 0.90874 0.82278 0.86363 0.91450 0.91951 0.86001 0.92663 0.91892 0.84139 0.89810 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 9.63 71.98 0.69 -4.37 16 2 C -0.12 -5.70 5.37 30.60 0.16 -5.53 16 3 C 0.23 11.29 1.85 44.17 0.08 11.37 16 4 H -0.03 -1.69 7.24 -2.39 -0.02 -1.71 16 5 C -0.51 -28.32 8.47 25.60 0.22 -28.10 16 6 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 7 C 0.01 0.53 5.29 84.65 0.45 0.97 16 8 N -0.92 -53.18 11.29 21.45 0.24 -52.94 16 9 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 N -0.68 -27.64 6.06 -473.24 -2.87 -30.51 16 14 C 0.10 3.57 2.29 44.93 0.10 3.67 16 15 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 16 C -0.10 -2.82 5.60 30.61 0.17 -2.65 16 17 C -0.07 -1.77 5.67 29.74 0.17 -1.60 16 18 C -0.08 -2.07 5.74 -19.84 -0.11 -2.19 16 19 C -0.17 -4.13 8.62 22.44 0.19 -3.94 16 20 C 0.08 2.29 6.69 22.50 0.15 2.44 16 21 O -0.33 -8.40 10.30 -79.92 -0.82 -9.22 16 22 C 0.02 0.26 9.81 113.37 1.11 1.37 16 23 C 0.08 2.31 6.69 22.50 0.15 2.46 16 24 O -0.33 -9.05 10.30 -80.00 -0.82 -9.88 16 25 C 0.02 0.36 9.81 113.37 1.11 1.47 16 26 C -0.18 -5.10 8.62 22.44 0.19 -4.91 16 27 C -0.08 -2.28 5.74 -19.83 -0.11 -2.39 16 28 C -0.09 -3.04 4.96 29.74 0.15 -2.89 16 29 H 0.06 1.89 6.67 -2.39 -0.02 1.88 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.07 3.52 5.94 -2.39 -0.01 3.50 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 35 H 0.33 11.87 6.22 -89.69 -0.56 11.31 16 36 H 0.07 1.84 8.10 -2.39 -0.02 1.82 16 37 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.10 1.88 8.13 -2.38 -0.02 1.86 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.16 2.85 6.27 -2.91 -0.02 2.83 16 41 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.07 0.82 7.68 -2.39 -0.02 0.80 16 43 H 0.06 0.83 7.65 -2.38 -0.02 0.81 16 44 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.05 1.03 7.66 -2.39 -0.02 1.02 16 46 H 0.06 1.06 7.67 -2.39 -0.02 1.04 16 47 H 0.14 3.58 6.27 -2.91 -0.02 3.56 16 48 H 0.08 2.43 7.94 -2.39 -0.02 2.41 16 49 H 0.05 1.86 7.57 -2.39 -0.02 1.84 16 Total: -1.00 -67.01 381.35 3.02 -63.99 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.38 Total: 26.86 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 4.88 Total: -34.80 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -2.62 Total: -83.45 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -1.65 Total: -19.10 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -67.01 3.02 -63.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164173.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.995 kcal (2) G-P(sol) polarization free energy of solvation -67.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds