Wall clock time and date at job start Tue Mar 31 2020 12:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45209 * 109.46884 * 2 1 4 4 C 1.34223 * 116.99543 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00259 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99633 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47311 * 180.02562 * 6 4 3 8 8 N 1.46907 * 109.47499 * 183.51226 * 7 6 4 9 9 C 1.46898 * 110.99865 * 200.67727 * 8 7 6 10 10 C 1.50696 * 109.46957 * 159.35354 * 9 8 7 11 11 C 1.38238 * 120.00106 * 277.37237 * 10 9 8 12 12 C 1.38235 * 119.99960 * 179.76974 * 11 10 9 13 13 C 1.38238 * 119.99945 * 0.49730 * 12 11 10 14 14 C 1.38237 * 120.00176 * 359.75643 * 13 12 11 15 15 C 1.38233 * 119.99743 * 359.97438 * 14 13 12 16 16 C 1.46895 * 110.99785 * 76.71704 * 8 7 6 17 17 H 1.08995 * 109.47893 * 323.25047 * 16 8 7 18 18 C 1.50704 * 109.47018 * 203.24841 * 16 8 7 19 19 H 1.08002 * 119.99967 * 245.38285 * 18 16 8 20 20 C 1.37871 * 119.99820 * 65.37422 * 18 16 8 21 21 N 1.31516 * 120.00060 * 5.68436 * 20 18 16 22 22 Si 1.86801 * 119.99828 * 185.67463 * 20 18 16 23 23 H 1.48510 * 109.46839 * 180.02562 * 22 20 18 24 24 H 1.48500 * 109.47457 * 300.00062 * 22 20 18 25 25 H 1.48496 * 109.47177 * 60.00615 * 22 20 18 26 26 C 1.53008 * 109.46736 * 83.25297 * 16 8 7 27 27 C 1.52996 * 109.46886 * 299.72076 * 26 16 8 28 28 H 1.09000 * 109.47026 * 60.00362 * 1 2 3 29 29 H 1.09001 * 109.46885 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47217 * 299.99968 * 1 2 3 31 31 H 1.09000 * 109.47217 * 240.00032 * 2 1 3 32 32 H 1.09000 * 109.47026 * 119.99638 * 2 1 3 33 33 H 1.08991 * 109.47464 * 59.99578 * 6 4 3 34 34 H 1.09010 * 109.47242 * 299.99690 * 6 4 3 35 35 H 1.09003 * 109.47799 * 63.50636 * 7 6 4 36 36 H 1.09006 * 109.46910 * 303.50760 * 7 6 4 37 37 H 1.08999 * 109.46868 * 279.34878 * 9 8 7 38 38 H 1.08997 * 109.47563 * 39.35097 * 9 8 7 39 39 H 1.07996 * 119.99734 * 359.97438 * 11 10 9 40 40 H 1.08001 * 120.00223 * 180.22945 * 12 11 10 41 41 H 1.07997 * 119.99627 * 179.72647 * 13 12 11 42 42 H 1.08000 * 119.99939 * 179.97438 * 14 13 12 43 43 H 1.08000 * 120.00298 * 179.97438 * 15 14 13 44 44 H 0.96994 * 120.00168 * 355.11393 * 21 20 18 45 45 H 1.08997 * 109.46973 * 59.72582 * 26 16 8 46 46 H 1.09002 * 109.46396 * 179.72364 * 26 16 8 47 47 H 1.08997 * 109.47519 * 312.59937 * 27 26 16 48 48 H 1.08998 * 109.47146 * 72.60342 * 27 26 16 49 49 H 1.09002 * 109.46673 * 192.59997 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.4485 2.8575 -0.0014 8 7 6.0100 4.2123 0.0840 9 6 7.3980 4.2382 -0.3964 10 6 7.7723 5.6480 -0.7750 11 6 7.4238 6.1459 -2.0166 12 6 7.7630 7.4407 -2.3621 13 6 8.4596 8.2342 -1.4698 14 6 8.8127 7.7346 -0.2302 15 6 8.4686 6.4416 0.1174 16 6 5.9169 4.7354 1.4535 17 1 4.9842 4.4010 1.9076 18 6 5.9472 6.2417 1.4191 19 1 6.7769 6.7753 1.8587 20 6 4.9158 6.9385 0.8262 21 7 3.8536 6.2968 0.3906 22 14 5.0269 8.7940 0.6418 23 1 3.7985 9.2999 -0.0220 24 1 5.1569 9.4180 1.9830 25 1 6.2132 9.1394 -0.1820 26 6 7.0988 4.2202 2.2775 27 6 7.0642 2.6912 2.3181 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.5851 3.4691 0.8903 34 1 3.5843 3.4702 -0.8896 35 1 5.7867 2.3814 -0.9218 36 1 5.7825 2.2713 0.8548 37 1 8.0621 3.8854 0.3926 38 1 7.4930 3.5906 -1.2679 39 1 6.8837 5.5244 -2.7154 40 1 7.4876 7.8310 -3.3307 41 1 8.7285 9.2443 -1.7415 42 1 9.3573 8.3544 0.4667 43 1 8.7448 6.0510 1.0856 44 1 3.8258 5.3278 0.4217 45 1 8.0316 4.5506 1.8207 46 1 7.0323 4.6123 3.2924 47 1 6.0559 2.3569 2.5625 48 1 7.3523 2.2952 1.3444 49 1 7.7598 2.3321 3.0766 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166740.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:40 Heat of formation + Delta-G solvation = -47.590445 kcal Electronic energy + Delta-G solvation = -28617.596035 eV Core-core repulsion = 24931.301160 eV Total energy + Delta-G solvation = -3686.294875 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.26498 -39.09980 -37.46213 -36.39350 -32.63851 -32.27683 -31.69914 -31.51731 -30.05319 -29.20634 -26.95905 -25.16766 -23.43286 -23.05706 -21.86213 -21.61649 -20.97895 -20.08847 -18.98689 -17.52426 -16.87888 -16.49538 -16.14900 -15.96280 -15.39958 -14.59302 -14.49086 -14.17530 -13.79916 -13.72232 -13.52820 -13.14658 -13.00682 -12.77193 -12.68229 -12.47596 -12.19581 -11.90267 -11.83060 -11.80695 -11.58566 -11.37638 -11.27809 -10.96718 -10.76919 -10.62155 -10.50630 -10.46311 -10.26094 -10.20796 -10.07615 -10.00403 -9.86068 -9.54542 -8.55662 -8.30187 -7.98084 -7.65821 -7.01554 -6.11397 -3.84828 2.23537 2.29601 2.50245 2.89319 3.53247 3.62380 3.73980 4.53788 4.68298 4.87642 4.88813 4.99339 5.20349 5.23754 5.46493 5.54685 5.57502 5.64330 5.67245 5.70775 5.71230 5.73855 5.75254 5.86019 5.87450 5.90765 5.97783 6.08728 6.15024 6.19109 6.32481 6.36325 6.37580 6.44728 6.53676 6.56530 6.68094 6.74451 6.83680 6.87497 6.94215 7.13562 7.29245 7.33530 7.55112 7.86446 7.97765 8.04628 8.24531 8.49950 8.67799 9.10813 9.89336 11.28027 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.004256 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.646877 B = 6576.756724 C = 7105.994649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.358 6.358 4 C 0.466 3.534 5 O -0.520 6.520 6 C -0.105 4.105 7 C 0.040 3.960 8 N -0.511 5.511 9 C 0.093 3.907 10 C -0.029 4.029 11 C -0.101 4.101 12 C -0.132 4.132 13 C -0.128 4.128 14 C -0.134 4.134 15 C -0.072 4.072 16 C 0.199 3.801 17 H 0.031 0.969 18 C -0.577 4.577 19 H 0.048 0.952 20 C 0.051 3.949 21 N -0.901 5.901 22 Si 1.038 2.962 23 H -0.289 1.289 24 H -0.296 1.296 25 H -0.272 1.272 26 C -0.150 4.150 27 C -0.157 4.157 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.280 0.720 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.054 0.946 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.673 -7.048 -2.052 7.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.275 6.275 4 C 0.310 3.690 5 O -0.409 6.409 6 C -0.143 4.143 7 C -0.088 4.088 8 N -0.236 5.236 9 C -0.035 4.035 10 C -0.030 4.030 11 C -0.120 4.120 12 C -0.150 4.150 13 C -0.146 4.146 14 C -0.152 4.152 15 C -0.091 4.091 16 C 0.094 3.906 17 H 0.048 0.952 18 C -0.616 4.616 19 H 0.067 0.933 20 C -0.157 4.157 21 N -0.537 5.537 22 Si 0.868 3.132 23 H -0.215 1.215 24 H -0.223 1.223 25 H -0.197 1.197 26 C -0.189 4.189 27 C -0.214 4.214 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.731 -5.750 -2.860 6.464 hybrid contribution 1.068 -1.847 1.034 2.370 sum 1.799 -7.597 -1.827 8.018 Atomic orbital electron populations 1.21797 0.92857 1.02592 1.03679 1.22952 0.95273 0.80961 1.02212 1.86580 1.25197 1.31618 1.84108 1.24242 0.80072 0.93373 0.71289 1.90605 1.60388 1.43628 1.46253 1.21477 0.97158 0.88666 1.06983 1.22369 0.91820 0.92827 1.01753 1.62874 1.16266 1.17361 1.27087 1.21036 0.90990 0.93116 0.98310 1.19432 0.94768 0.95787 0.92991 1.20743 0.99087 0.95428 0.96723 1.20859 1.00264 0.94673 0.99212 1.20807 1.00398 0.98687 0.94752 1.20850 1.02042 0.95903 0.96425 1.20795 0.96989 0.93726 0.97565 1.19574 0.92307 0.95954 0.82718 0.95173 1.21707 1.09500 0.89278 1.41109 0.93347 1.25263 0.92219 1.05294 0.92971 1.70692 1.27767 1.11792 1.43465 0.84027 0.76578 0.76229 0.76366 1.21505 1.22346 1.19713 1.22256 1.02138 0.93291 1.01231 1.22158 1.00575 0.98161 1.00485 0.91440 0.90562 0.91420 0.91544 0.91555 0.87208 0.87032 0.92223 0.92374 0.93583 0.92534 0.87372 0.87543 0.87738 0.87567 0.87143 0.90690 0.91858 0.92679 0.93079 0.92753 0.94238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.29 37.16 0.38 -1.04 16 2 C 0.06 0.74 6.19 37.16 0.23 0.97 16 3 O -0.36 -5.71 10.22 -39.24 -0.40 -6.11 16 4 C 0.47 8.12 7.96 36.01 0.29 8.41 16 5 O -0.52 -9.76 15.70 -18.75 -0.29 -10.06 16 6 C -0.10 -1.93 4.72 -27.88 -0.13 -2.06 16 7 C 0.04 0.75 3.67 -3.82 -0.01 0.74 16 8 N -0.51 -10.47 3.64 -229.47 -0.84 -11.30 16 9 C 0.09 1.74 4.40 -4.98 -0.02 1.72 16 10 C -0.03 -0.57 4.30 -104.62 -0.45 -1.02 16 11 C -0.10 -1.96 9.73 -39.58 -0.39 -2.34 16 12 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 13 C -0.13 -2.29 9.36 -39.58 -0.37 -2.66 16 14 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 15 C -0.07 -1.39 6.74 -39.58 -0.27 -1.66 16 16 C 0.20 4.41 1.28 -68.86 -0.09 4.32 16 17 H 0.03 0.74 6.09 -51.93 -0.32 0.43 16 18 C -0.58 -14.43 5.72 -34.44 -0.20 -14.63 16 19 H 0.05 1.24 6.53 -52.49 -0.34 0.89 16 20 C 0.05 1.36 5.39 -17.82 -0.10 1.26 16 21 N -0.90 -25.20 13.60 55.43 0.75 -24.45 16 22 Si 1.04 24.88 29.91 -169.99 -5.08 19.80 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.30 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.25 6.41 56.52 0.36 -5.88 16 26 C -0.15 -2.89 4.81 -26.73 -0.13 -3.01 16 27 C -0.16 -2.65 7.95 37.16 0.30 -2.35 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 32 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 33 H 0.11 2.21 5.73 -51.93 -0.30 1.91 16 34 H 0.11 2.13 8.09 -51.92 -0.42 1.71 16 35 H 0.06 1.07 7.57 -51.93 -0.39 0.68 16 36 H 0.06 1.08 3.50 -51.93 -0.18 0.90 16 37 H 0.05 0.83 4.16 -51.93 -0.22 0.62 16 38 H 0.06 0.98 7.56 -51.93 -0.39 0.59 16 39 H 0.11 2.00 8.06 -52.49 -0.42 1.58 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 43 H 0.11 2.07 5.95 -52.49 -0.31 1.76 16 44 H 0.28 7.40 4.03 -40.82 -0.16 7.24 16 45 H 0.06 1.19 3.81 -51.93 -0.20 0.99 16 46 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.05 0.89 7.16 -51.93 -0.37 0.52 16 48 H 0.05 0.90 5.32 -51.93 -0.28 0.63 16 49 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -29.07 371.00 -9.39 -38.46 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -7.37 Total: 7.10 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -1.75 Total: -19.03 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.08 Total: -35.75 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.70 Total: -16.17 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.08 Total: 19.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.07 -9.39 -38.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166740.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.129 kcal (2) G-P(sol) polarization free energy of solvation -29.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds