Wall clock time and date at job start Tue Mar 31 2020 12:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45209 * 109.46884 * 2 1 4 4 C 1.34223 * 116.99543 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00259 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99633 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47311 * 180.02562 * 6 4 3 8 8 N 1.46907 * 109.47499 * 183.51226 * 7 6 4 9 9 C 1.46898 * 110.99865 * 200.67727 * 8 7 6 10 10 C 1.50696 * 109.46957 * 159.35354 * 9 8 7 11 11 C 1.38238 * 120.00106 * 277.37237 * 10 9 8 12 12 C 1.38235 * 119.99960 * 179.76974 * 11 10 9 13 13 C 1.38238 * 119.99945 * 0.49730 * 12 11 10 14 14 C 1.38237 * 120.00176 * 359.75643 * 13 12 11 15 15 C 1.38233 * 119.99743 * 359.97438 * 14 13 12 16 16 C 1.46895 * 110.99785 * 76.71704 * 8 7 6 17 17 H 1.08995 * 109.47893 * 323.25047 * 16 8 7 18 18 C 1.50704 * 109.47018 * 203.24841 * 16 8 7 19 19 H 1.08002 * 119.99967 * 245.38285 * 18 16 8 20 20 C 1.37871 * 119.99820 * 65.37422 * 18 16 8 21 21 N 1.31516 * 120.00060 * 5.68436 * 20 18 16 22 22 Si 1.86801 * 119.99828 * 185.67463 * 20 18 16 23 23 H 1.48510 * 109.46839 * 180.02562 * 22 20 18 24 24 H 1.48500 * 109.47457 * 300.00062 * 22 20 18 25 25 H 1.48496 * 109.47177 * 60.00615 * 22 20 18 26 26 C 1.53008 * 109.46736 * 83.25297 * 16 8 7 27 27 C 1.52996 * 109.46886 * 299.72076 * 26 16 8 28 28 H 1.09000 * 109.47026 * 60.00362 * 1 2 3 29 29 H 1.09001 * 109.46885 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47217 * 299.99968 * 1 2 3 31 31 H 1.09000 * 109.47217 * 240.00032 * 2 1 3 32 32 H 1.09000 * 109.47026 * 119.99638 * 2 1 3 33 33 H 1.08991 * 109.47464 * 59.99578 * 6 4 3 34 34 H 1.09010 * 109.47242 * 299.99690 * 6 4 3 35 35 H 1.09003 * 109.47799 * 63.50636 * 7 6 4 36 36 H 1.09006 * 109.46910 * 303.50760 * 7 6 4 37 37 H 1.08999 * 109.46868 * 279.34878 * 9 8 7 38 38 H 1.08997 * 109.47563 * 39.35097 * 9 8 7 39 39 H 1.07996 * 119.99734 * 359.97438 * 11 10 9 40 40 H 1.08001 * 120.00223 * 180.22945 * 12 11 10 41 41 H 1.07997 * 119.99627 * 179.72647 * 13 12 11 42 42 H 1.08000 * 119.99939 * 179.97438 * 14 13 12 43 43 H 1.08000 * 120.00298 * 179.97438 * 15 14 13 44 44 H 0.96994 * 120.00168 * 355.11393 * 21 20 18 45 45 H 1.08997 * 109.46973 * 59.72582 * 26 16 8 46 46 H 1.09002 * 109.46396 * 179.72364 * 26 16 8 47 47 H 1.08997 * 109.47519 * 312.59937 * 27 26 16 48 48 H 1.08998 * 109.47146 * 72.60342 * 27 26 16 49 49 H 1.09002 * 109.46673 * 192.59997 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.4485 2.8575 -0.0014 8 7 6.0100 4.2123 0.0840 9 6 7.3980 4.2382 -0.3964 10 6 7.7723 5.6480 -0.7750 11 6 7.4238 6.1459 -2.0166 12 6 7.7630 7.4407 -2.3621 13 6 8.4596 8.2342 -1.4698 14 6 8.8127 7.7346 -0.2302 15 6 8.4686 6.4416 0.1174 16 6 5.9169 4.7354 1.4535 17 1 4.9842 4.4010 1.9076 18 6 5.9472 6.2417 1.4191 19 1 6.7769 6.7753 1.8587 20 6 4.9158 6.9385 0.8262 21 7 3.8536 6.2968 0.3906 22 14 5.0269 8.7940 0.6418 23 1 3.7985 9.2999 -0.0220 24 1 5.1569 9.4180 1.9830 25 1 6.2132 9.1394 -0.1820 26 6 7.0988 4.2202 2.2775 27 6 7.0642 2.6912 2.3181 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.5851 3.4691 0.8903 34 1 3.5843 3.4702 -0.8896 35 1 5.7867 2.3814 -0.9218 36 1 5.7825 2.2713 0.8548 37 1 8.0621 3.8854 0.3926 38 1 7.4930 3.5906 -1.2679 39 1 6.8837 5.5244 -2.7154 40 1 7.4876 7.8310 -3.3307 41 1 8.7285 9.2443 -1.7415 42 1 9.3573 8.3544 0.4667 43 1 8.7448 6.0510 1.0856 44 1 3.8258 5.3278 0.4217 45 1 8.0316 4.5506 1.8207 46 1 7.0323 4.6123 3.2924 47 1 6.0559 2.3569 2.5625 48 1 7.3523 2.2952 1.3444 49 1 7.7598 2.3321 3.0766 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166740.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:39 Heat of formation + Delta-G solvation = -61.058043 kcal Electronic energy + Delta-G solvation = -28618.180034 eV Core-core repulsion = 24931.301160 eV Total energy + Delta-G solvation = -3686.878874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.63913 -40.60764 -38.93890 -37.72626 -34.46394 -33.80761 -33.17830 -32.56030 -31.48120 -30.68310 -28.66921 -26.58709 -25.16776 -24.29551 -23.26324 -22.98599 -22.46893 -21.50850 -20.61397 -18.97287 -18.61809 -17.79358 -17.55854 -17.39088 -16.88323 -16.02599 -15.88020 -15.67913 -15.46086 -15.23606 -15.05209 -14.54294 -14.34508 -14.19619 -13.93490 -13.77095 -13.66536 -13.34320 -13.32020 -12.99008 -12.88125 -12.84993 -12.61285 -12.50601 -12.39135 -12.24153 -12.15827 -11.91181 -11.75523 -11.61656 -11.56611 -11.52639 -11.44498 -11.17134 -10.44860 -10.18617 -9.44324 -9.21064 -8.63366 -8.12052 -5.87157 0.79220 0.84901 1.09160 1.60018 1.64897 1.70530 1.82760 2.75753 3.07937 3.44402 3.72975 3.85075 3.96497 4.02575 4.05717 4.08656 4.19027 4.24048 4.25889 4.30894 4.35842 4.39867 4.45883 4.49459 4.60814 4.62377 4.72216 4.80687 4.84853 4.87657 4.89254 4.93848 4.98996 5.04703 5.08386 5.11740 5.20852 5.31318 5.41138 5.44113 5.45398 5.53246 5.85654 5.88151 6.08222 6.21182 6.44666 6.47775 6.64872 6.74993 6.85423 7.12077 7.91921 9.27873 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.004256 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.646877 B = 6576.756724 C = 7105.994649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.366 6.366 4 C 0.475 3.525 5 O -0.533 6.533 6 C -0.096 4.096 7 C 0.047 3.953 8 N -0.523 5.523 9 C 0.093 3.907 10 C -0.045 4.045 11 C -0.118 4.118 12 C -0.140 4.140 13 C -0.134 4.134 14 C -0.141 4.141 15 C -0.086 4.086 16 C 0.203 3.797 17 H 0.002 0.998 18 C -0.568 4.568 19 H 0.042 0.958 20 C 0.013 3.987 21 N -0.939 5.939 22 Si 1.065 2.935 23 H -0.304 1.304 24 H -0.290 1.290 25 H -0.256 1.256 26 C -0.145 4.145 27 C -0.148 4.148 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.110 0.890 44 H 0.281 0.719 45 H 0.069 0.931 46 H 0.047 0.953 47 H 0.041 0.959 48 H 0.058 0.942 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 -7.511 -2.309 8.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.283 6.283 4 C 0.320 3.680 5 O -0.423 6.423 6 C -0.134 4.134 7 C -0.081 4.081 8 N -0.247 5.247 9 C -0.034 4.034 10 C -0.046 4.046 11 C -0.137 4.137 12 C -0.158 4.158 13 C -0.152 4.152 14 C -0.159 4.159 15 C -0.105 4.105 16 C 0.098 3.902 17 H 0.020 0.980 18 C -0.606 4.606 19 H 0.060 0.940 20 C -0.191 4.191 21 N -0.577 5.577 22 Si 0.893 3.107 23 H -0.231 1.231 24 H -0.216 1.216 25 H -0.180 1.180 26 C -0.184 4.184 27 C -0.205 4.205 28 H 0.086 0.914 29 H 0.124 0.876 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.128 0.872 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.060 0.940 48 H 0.077 0.923 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.553 -6.216 -3.113 7.123 hybrid contribution 0.812 -1.742 1.113 2.221 sum 2.365 -7.958 -2.000 8.540 Atomic orbital electron populations 1.21836 0.90419 1.04503 1.03570 1.23347 0.97203 0.79074 1.02687 1.86565 1.24077 1.34116 1.83581 1.23849 0.80638 0.92532 0.71001 1.90590 1.60853 1.43807 1.47061 1.21273 0.97340 0.89335 1.05498 1.22328 0.91690 0.91851 1.02260 1.62570 1.17641 1.18578 1.25923 1.21098 0.89968 0.93338 0.99011 1.19587 0.95321 0.96278 0.93383 1.20932 0.99554 0.96267 0.96906 1.21190 0.99910 0.94329 1.00349 1.21176 0.99756 0.99877 0.94429 1.21186 1.01808 0.95787 0.97125 1.20909 0.97544 0.94402 0.97613 1.19353 0.92216 0.94648 0.83978 0.98018 1.21864 1.08409 0.90850 1.39523 0.94010 1.25976 0.92411 1.07424 0.93251 1.70719 1.28876 1.12182 1.45952 0.83681 0.76370 0.74034 0.76661 1.23086 1.21637 1.18027 1.22144 1.01023 0.95008 1.00186 1.22037 1.00730 0.96165 1.01520 0.91432 0.87591 0.91635 0.90955 0.91232 0.89227 0.88047 0.91362 0.91975 0.92745 0.91233 0.87315 0.85451 0.85126 0.85493 0.87173 0.90602 0.91223 0.93382 0.93962 0.92338 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 10.29 71.98 0.74 -1.74 16 2 C 0.05 1.18 6.19 71.98 0.45 1.62 16 3 O -0.37 -11.61 10.22 -51.35 -0.52 -12.13 16 4 C 0.48 16.56 7.96 71.24 0.57 17.13 16 5 O -0.53 -19.66 15.70 21.98 0.35 -19.32 16 6 C -0.10 -3.62 4.72 29.85 0.14 -3.48 16 7 C 0.05 1.72 3.67 86.30 0.32 2.04 16 8 N -0.52 -21.37 3.64 -879.91 -3.20 -24.57 16 9 C 0.09 3.40 4.40 85.56 0.38 3.78 16 10 C -0.05 -1.73 4.30 -19.86 -0.09 -1.82 16 11 C -0.12 -4.46 9.73 22.27 0.22 -4.24 16 12 C -0.14 -4.86 10.05 22.27 0.22 -4.64 16 13 C -0.13 -4.48 9.36 22.27 0.21 -4.27 16 14 C -0.14 -4.87 10.05 22.27 0.22 -4.65 16 15 C -0.09 -3.21 6.74 22.27 0.15 -3.06 16 16 C 0.20 9.06 1.28 44.17 0.06 9.12 16 17 H 0.00 0.10 6.09 -2.39 -0.01 0.09 16 18 C -0.57 -28.43 5.72 25.60 0.15 -28.29 16 19 H 0.04 2.12 6.53 -2.91 -0.02 2.10 16 20 C 0.01 0.70 5.39 84.65 0.46 1.15 16 21 N -0.94 -53.54 13.60 21.45 0.29 -53.25 16 22 Si 1.06 50.07 29.91 68.60 2.05 52.13 16 23 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 24 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.26 -11.21 6.41 99.48 0.64 -10.57 16 26 C -0.14 -5.45 4.81 30.60 0.15 -5.30 16 27 C -0.15 -4.76 7.95 71.98 0.57 -4.19 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 32 H 0.07 1.59 8.13 -2.39 -0.02 1.57 16 33 H 0.09 3.77 5.73 -2.39 -0.01 3.75 16 34 H 0.10 4.00 8.09 -2.38 -0.02 3.98 16 35 H 0.07 2.40 7.57 -2.39 -0.02 2.38 16 36 H 0.06 2.27 3.50 -2.38 -0.01 2.26 16 37 H 0.05 1.89 4.16 -2.39 -0.01 1.88 16 38 H 0.07 2.33 7.56 -2.39 -0.02 2.31 16 39 H 0.11 3.98 8.06 -2.91 -0.02 3.96 16 40 H 0.13 3.78 8.06 -2.91 -0.02 3.75 16 41 H 0.13 3.61 8.06 -2.91 -0.02 3.58 16 42 H 0.13 3.76 8.06 -2.91 -0.02 3.73 16 43 H 0.11 4.02 5.95 -2.91 -0.02 4.00 16 44 H 0.28 15.30 4.03 -92.71 -0.37 14.93 16 45 H 0.07 2.54 3.81 -2.39 -0.01 2.53 16 46 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.04 1.43 7.16 -2.39 -0.02 1.41 16 48 H 0.06 1.84 5.32 -2.39 -0.01 1.82 16 49 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -61.74 371.00 5.13 -56.61 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 1.27 Total: 31.36 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: 4.90 Total: -30.83 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -2.91 Total: -77.81 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.18 Total: -31.45 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 2.05 Total: 52.13 kcal Total: -61.74 5.13 -56.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166740.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.448 kcal (2) G-P(sol) polarization free energy of solvation -61.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds