Wall clock time and date at job start Tue Mar 31 2020 12:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.46985 * 2 1 4 4 H 1.08996 * 109.47551 * 304.99928 * 3 2 1 5 5 C 1.50699 * 109.47017 * 184.99877 * 3 2 1 6 6 H 1.08002 * 120.00394 * 240.00107 * 5 3 2 7 7 C 1.37879 * 119.99774 * 60.00561 * 5 3 2 8 8 N 1.31512 * 120.00133 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99749 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46974 * 89.99807 * 9 7 5 11 11 H 1.48496 * 109.46777 * 209.99703 * 9 7 5 12 12 H 1.48500 * 109.47206 * 329.99819 * 9 7 5 13 13 N 1.46899 * 109.47055 * 65.00111 * 3 2 1 14 14 C 1.46855 * 111.00076 * 65.79238 * 13 3 2 15 15 C 1.53167 * 109.55526 * 185.84125 * 14 13 3 16 16 C 1.53117 * 109.20903 * 300.85379 * 15 14 13 17 17 C 1.53120 * 109.20815 * 57.62848 * 16 15 14 18 18 H 1.08995 * 109.50497 * 62.26126 * 17 16 15 19 19 O 1.42905 * 109.49992 * 182.37250 * 17 16 15 20 20 C 1.35992 * 117.00158 * 275.03814 * 19 17 16 21 21 C 1.38567 * 120.07293 * 5.42179 * 20 19 17 22 22 C 1.38245 * 119.99941 * 180.02562 * 21 20 19 23 23 C 1.38245 * 120.14550 * 359.97438 * 22 21 20 24 24 C 1.38246 * 120.14946 * 0.02562 * 23 22 21 25 25 C 1.38565 * 119.99664 * 359.71968 * 24 23 22 26 26 O 1.35997 * 120.06952 * 180.27856 * 25 24 23 27 27 C 1.42893 * 117.00404 * 0.27381 * 26 25 24 28 28 C 1.46846 * 111.00172 * 189.99695 * 13 3 2 29 29 H 1.08999 * 109.47647 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47295 * 299.99807 * 1 2 3 31 31 H 1.09004 * 109.47487 * 59.99417 * 1 2 3 32 32 H 1.08995 * 109.47414 * 240.00713 * 2 1 3 33 33 H 1.09000 * 109.47470 * 119.99813 * 2 1 3 34 34 H 0.96999 * 119.99830 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.45573 * 305.85036 * 14 13 3 36 36 H 1.08997 * 109.46301 * 65.83356 * 14 13 3 37 37 H 1.08999 * 109.58610 * 180.90647 * 15 14 13 38 38 H 1.09000 * 109.48921 * 60.74699 * 15 14 13 39 39 H 1.08996 * 109.52160 * 297.69214 * 16 15 14 40 40 H 1.08999 * 109.52611 * 177.56368 * 16 15 14 41 41 H 1.08004 * 119.99796 * 359.97438 * 21 20 19 42 42 H 1.08001 * 119.92283 * 180.02562 * 22 21 20 43 43 H 1.08005 * 119.92480 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.00058 * 179.97438 * 24 23 22 45 45 H 1.09000 * 109.47356 * 180.02562 * 27 26 25 46 46 H 1.09007 * 109.47100 * 300.00195 * 27 26 25 47 47 H 1.09001 * 109.47130 * 60.00148 * 27 26 25 48 48 H 1.09002 * 109.46082 * 54.14386 * 28 13 3 49 49 H 1.08999 * 109.46483 * 294.18095 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1431 0.8785 -1.2280 8 7 3.4061 0.3368 -2.1729 9 14 6.0049 0.8814 -1.3818 10 1 6.5548 -0.3501 -0.7602 11 1 6.3828 0.9226 -2.8173 12 1 6.5569 2.0739 -0.6901 13 7 1.6513 2.0993 1.2552 14 6 2.3292 1.4835 2.4032 15 6 1.7932 2.0926 3.7023 16 6 2.0394 3.6038 3.6893 17 6 1.3638 4.2137 2.4580 18 1 0.2873 4.0534 2.5168 19 8 1.6361 5.6158 2.4099 20 6 0.8177 6.4287 3.1301 21 6 -0.1529 5.8827 3.9547 22 6 -0.9844 6.7106 4.6858 23 6 -0.8498 8.0836 4.5969 24 6 0.1165 8.6349 3.7761 25 6 0.9566 7.8107 3.0447 26 8 1.9113 8.3513 2.2412 27 6 1.9963 9.7772 2.2035 28 6 1.9123 3.5432 1.1965 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0616 -2.9495 35 1 2.1425 0.4096 2.4019 36 1 3.4015 1.6659 2.3324 37 1 2.3075 1.6475 4.5540 38 1 0.7234 1.8988 3.7806 39 1 3.1113 3.7979 3.6503 40 1 1.6213 4.0488 4.5922 41 1 -0.2603 4.8104 4.0256 42 1 -1.7401 6.2837 5.3284 43 1 -1.5010 8.7270 5.1699 44 1 0.2192 9.7079 3.7082 45 1 2.7962 10.0758 1.5259 46 1 1.0501 10.1885 1.8516 47 1 2.2071 10.1552 3.2039 48 1 1.4229 3.9653 0.3188 49 1 2.9865 3.7157 1.1312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255171957.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:47 Heat of formation + Delta-G solvation = -47.758238 kcal Electronic energy + Delta-G solvation = -27897.316781 eV Core-core repulsion = 24211.014630 eV Total energy + Delta-G solvation = -3686.302151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -40.60858 -39.09053 -37.70560 -36.69242 -34.29894 -31.85514 -30.83737 -30.41570 -30.31665 -28.89779 -27.28031 -26.54909 -23.94414 -23.37695 -22.40281 -22.02880 -21.64635 -19.64170 -19.08649 -18.47027 -17.19036 -16.42233 -16.23216 -15.90633 -15.45764 -14.91803 -14.78848 -14.63728 -14.53686 -14.35692 -13.71253 -13.40431 -13.26215 -12.92087 -12.81765 -12.67880 -12.23585 -12.20938 -11.97395 -11.69670 -11.54873 -11.30993 -11.22929 -11.16632 -11.12702 -10.91747 -10.72955 -10.50949 -10.38403 -10.22907 -10.06725 -9.72368 -9.62748 -9.39937 -9.08772 -8.75371 -8.35826 -7.77129 -7.17162 -5.98862 -4.11877 1.23971 1.42140 3.23966 3.27589 3.31546 3.35160 3.38810 3.70441 4.40641 4.71273 4.83344 4.91753 4.99849 5.01992 5.03098 5.11862 5.23446 5.26799 5.33739 5.35836 5.36555 5.45457 5.60317 5.63221 5.81292 5.98652 6.12871 6.18282 6.18990 6.25607 6.31216 6.35291 6.44049 6.46782 6.48875 6.60701 6.65170 6.68468 6.73974 6.85479 7.11205 7.15953 7.19356 7.34151 7.58814 7.73124 7.77077 7.95184 8.13891 8.28389 8.45587 8.97105 9.55795 11.00684 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.003504 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.248351 B = 7987.904894 C = 8988.965360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.217 3.783 4 H 0.039 0.961 5 C -0.544 4.544 6 H 0.057 0.943 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.529 5.529 14 C 0.056 3.944 15 C -0.114 4.114 16 C -0.141 4.141 17 C 0.088 3.912 18 H 0.076 0.924 19 O -0.298 6.298 20 C 0.116 3.884 21 C -0.176 4.176 22 C -0.116 4.116 23 C -0.128 4.128 24 C -0.175 4.175 25 C 0.091 3.909 26 O -0.304 6.304 27 C 0.028 3.972 28 C 0.073 3.927 29 H 0.025 0.975 30 H 0.047 0.953 31 H 0.039 0.961 32 H 0.093 0.907 33 H 0.033 0.967 34 H 0.261 0.739 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.139 0.861 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.131 0.869 45 H 0.099 0.901 46 H 0.052 0.948 47 H 0.052 0.948 48 H 0.072 0.928 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.535 13.312 12.858 19.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.111 3.889 4 H 0.057 0.943 5 C -0.583 4.583 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.254 5.254 14 C -0.072 4.072 15 C -0.152 4.152 16 C -0.179 4.179 17 C 0.032 3.968 18 H 0.094 0.906 19 O -0.211 6.211 20 C 0.070 3.930 21 C -0.195 4.195 22 C -0.135 4.135 23 C -0.146 4.146 24 C -0.194 4.194 25 C 0.046 3.954 26 O -0.217 6.217 27 C -0.068 4.068 28 C -0.056 4.056 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.111 0.889 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.157 0.843 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.149 0.851 45 H 0.117 0.883 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.090 0.910 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.708 13.106 12.469 19.664 hybrid contribution 1.741 0.259 -0.064 1.761 sum -5.968 13.365 12.405 19.187 Atomic orbital electron populations 1.21712 0.98844 0.98436 1.00580 1.21601 0.92251 0.98970 1.02014 1.19277 0.93217 0.91174 0.85269 0.94273 1.21737 0.92777 1.38202 1.05603 0.92471 1.24891 0.97809 0.94998 0.95611 1.69868 1.34788 1.38238 1.09434 0.86686 0.86240 0.78389 0.77265 1.20706 1.21186 1.20014 1.62324 1.57279 1.00434 1.05408 1.22007 0.96976 0.99015 0.89199 1.21622 1.01499 0.93744 0.98340 1.22123 1.01751 0.96835 0.97173 1.22598 1.00088 0.76849 0.97252 0.90643 1.86208 1.51402 1.18433 1.65064 1.18340 0.92546 0.87792 0.94338 1.21243 0.97586 1.01069 0.99608 1.20853 0.99457 0.93262 0.99894 1.20779 0.98879 0.95065 0.99892 1.21017 0.98410 0.99344 1.00652 1.18331 0.92192 0.89816 0.95081 1.86230 1.51485 1.22079 1.61949 1.23034 1.02504 0.79174 1.02053 1.21705 0.99895 0.89806 0.94217 0.95592 0.93385 0.94230 0.88873 0.94814 0.92885 0.90761 0.94084 0.91934 0.91735 0.91286 0.92207 0.84308 0.85797 0.85949 0.85146 0.88299 0.92909 0.92981 0.90983 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.80 37.15 0.36 -2.40 16 2 C -0.11 -2.54 5.16 -26.73 -0.14 -2.68 16 3 C 0.22 5.23 1.71 -68.86 -0.12 5.11 16 4 H 0.04 1.06 7.99 -51.93 -0.41 0.64 16 5 C -0.54 -14.37 7.23 -34.44 -0.25 -14.62 16 6 H 0.06 1.53 5.84 -52.49 -0.31 1.22 16 7 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 8 N -0.88 -24.66 11.29 55.43 0.63 -24.03 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 N -0.53 -10.84 4.06 -227.99 -0.93 -11.77 16 14 C 0.06 1.06 4.79 -3.76 -0.02 1.04 16 15 C -0.11 -1.71 6.11 -26.58 -0.16 -1.87 16 16 C -0.14 -2.13 5.28 -26.61 -0.14 -2.27 16 17 C 0.09 1.47 2.27 -26.65 -0.06 1.41 16 18 H 0.08 1.20 6.32 -51.93 -0.33 0.87 16 19 O -0.30 -5.26 9.59 -34.21 -0.33 -5.59 16 20 C 0.12 1.79 6.61 -39.12 -0.26 1.53 16 21 C -0.18 -2.29 8.27 -39.46 -0.33 -2.62 16 22 C -0.12 -1.26 10.04 -39.58 -0.40 -1.66 16 23 C -0.13 -1.30 10.04 -39.58 -0.40 -1.70 16 24 C -0.18 -1.96 9.04 -39.46 -0.36 -2.31 16 25 C 0.09 1.30 6.70 -39.12 -0.26 1.04 16 26 O -0.30 -4.41 10.28 -34.23 -0.35 -4.76 16 27 C 0.03 0.25 9.81 101.05 0.99 1.24 16 28 C 0.07 1.45 4.84 -3.84 -0.02 1.43 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.91 7.75 -51.93 -0.40 0.51 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 33 H 0.03 0.76 6.22 -51.93 -0.32 0.44 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.07 1.43 6.12 -51.93 -0.32 1.11 16 36 H 0.04 0.85 6.37 -51.93 -0.33 0.52 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 0.80 6.90 -51.93 -0.36 0.44 16 41 H 0.14 1.70 5.40 -52.48 -0.28 1.42 16 42 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 44 H 0.13 1.10 6.30 -52.48 -0.33 0.77 16 45 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.40 7.65 -51.93 -0.40 0.01 16 47 H 0.05 0.39 7.68 -51.93 -0.40 -0.01 16 48 H 0.07 1.49 8.02 -51.93 -0.42 1.08 16 49 H 0.05 1.04 7.29 -51.93 -0.38 0.67 16 LS Contribution 374.14 15.07 5.64 5.64 Total: -1.00 -29.07 374.14 -9.82 -38.89 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.81 Total: 3.03 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -1.64 Total: -17.54 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.30 Total: -35.80 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.68 Total: -10.35 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.07 -9.82 -38.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255171957.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.869 kcal (2) G-P(sol) polarization free energy of solvation -29.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds