Wall clock time and date at job start Tue Mar 31 2020 12:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.46985 * 2 1 4 4 H 1.08996 * 109.47551 * 304.99928 * 3 2 1 5 5 C 1.50699 * 109.47017 * 184.99877 * 3 2 1 6 6 H 1.08002 * 120.00394 * 240.00107 * 5 3 2 7 7 C 1.37879 * 119.99774 * 60.00561 * 5 3 2 8 8 N 1.31512 * 120.00133 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99749 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46974 * 89.99807 * 9 7 5 11 11 H 1.48496 * 109.46777 * 209.99703 * 9 7 5 12 12 H 1.48500 * 109.47206 * 329.99819 * 9 7 5 13 13 N 1.46899 * 109.47055 * 65.00111 * 3 2 1 14 14 C 1.46855 * 111.00076 * 65.79238 * 13 3 2 15 15 C 1.53167 * 109.55526 * 185.84125 * 14 13 3 16 16 C 1.53117 * 109.20903 * 300.85379 * 15 14 13 17 17 C 1.53120 * 109.20815 * 57.62848 * 16 15 14 18 18 H 1.08995 * 109.50497 * 62.26126 * 17 16 15 19 19 O 1.42905 * 109.49992 * 182.37250 * 17 16 15 20 20 C 1.35992 * 117.00158 * 275.03814 * 19 17 16 21 21 C 1.38567 * 120.07293 * 5.42179 * 20 19 17 22 22 C 1.38245 * 119.99941 * 180.02562 * 21 20 19 23 23 C 1.38245 * 120.14550 * 359.97438 * 22 21 20 24 24 C 1.38246 * 120.14946 * 0.02562 * 23 22 21 25 25 C 1.38565 * 119.99664 * 359.71968 * 24 23 22 26 26 O 1.35997 * 120.06952 * 180.27856 * 25 24 23 27 27 C 1.42893 * 117.00404 * 0.27381 * 26 25 24 28 28 C 1.46846 * 111.00172 * 189.99695 * 13 3 2 29 29 H 1.08999 * 109.47647 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47295 * 299.99807 * 1 2 3 31 31 H 1.09004 * 109.47487 * 59.99417 * 1 2 3 32 32 H 1.08995 * 109.47414 * 240.00713 * 2 1 3 33 33 H 1.09000 * 109.47470 * 119.99813 * 2 1 3 34 34 H 0.96999 * 119.99830 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.45573 * 305.85036 * 14 13 3 36 36 H 1.08997 * 109.46301 * 65.83356 * 14 13 3 37 37 H 1.08999 * 109.58610 * 180.90647 * 15 14 13 38 38 H 1.09000 * 109.48921 * 60.74699 * 15 14 13 39 39 H 1.08996 * 109.52160 * 297.69214 * 16 15 14 40 40 H 1.08999 * 109.52611 * 177.56368 * 16 15 14 41 41 H 1.08004 * 119.99796 * 359.97438 * 21 20 19 42 42 H 1.08001 * 119.92283 * 180.02562 * 22 21 20 43 43 H 1.08005 * 119.92480 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.00058 * 179.97438 * 24 23 22 45 45 H 1.09000 * 109.47356 * 180.02562 * 27 26 25 46 46 H 1.09007 * 109.47100 * 300.00195 * 27 26 25 47 47 H 1.09001 * 109.47130 * 60.00148 * 27 26 25 48 48 H 1.09002 * 109.46082 * 54.14386 * 28 13 3 49 49 H 1.08999 * 109.46483 * 294.18095 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1431 0.8785 -1.2280 8 7 3.4061 0.3368 -2.1729 9 14 6.0049 0.8814 -1.3818 10 1 6.5548 -0.3501 -0.7602 11 1 6.3828 0.9226 -2.8173 12 1 6.5569 2.0739 -0.6901 13 7 1.6513 2.0993 1.2552 14 6 2.3292 1.4835 2.4032 15 6 1.7932 2.0926 3.7023 16 6 2.0394 3.6038 3.6893 17 6 1.3638 4.2137 2.4580 18 1 0.2873 4.0534 2.5168 19 8 1.6361 5.6158 2.4099 20 6 0.8177 6.4287 3.1301 21 6 -0.1529 5.8827 3.9547 22 6 -0.9844 6.7106 4.6858 23 6 -0.8498 8.0836 4.5969 24 6 0.1165 8.6349 3.7761 25 6 0.9566 7.8107 3.0447 26 8 1.9113 8.3513 2.2412 27 6 1.9963 9.7772 2.2035 28 6 1.9123 3.5432 1.1965 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0616 -2.9495 35 1 2.1425 0.4096 2.4019 36 1 3.4015 1.6659 2.3324 37 1 2.3075 1.6475 4.5540 38 1 0.7234 1.8988 3.7806 39 1 3.1113 3.7979 3.6503 40 1 1.6213 4.0488 4.5922 41 1 -0.2603 4.8104 4.0256 42 1 -1.7401 6.2837 5.3284 43 1 -1.5010 8.7270 5.1699 44 1 0.2192 9.7079 3.7082 45 1 2.7962 10.0758 1.5259 46 1 1.0501 10.1885 1.8516 47 1 2.2071 10.1552 3.2039 48 1 1.4229 3.9653 0.3188 49 1 2.9865 3.7157 1.1312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255171957.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:45 Heat of formation + Delta-G solvation = -63.862812 kcal Electronic energy + Delta-G solvation = -27898.015128 eV Core-core repulsion = 24211.014630 eV Total energy + Delta-G solvation = -3687.000498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.65703 -40.35516 -39.03728 -37.73906 -35.95818 -33.78714 -32.40085 -31.61251 -31.23781 -30.10231 -28.47543 -28.04545 -25.68841 -24.66195 -23.88608 -23.11880 -22.82331 -21.15302 -20.71445 -19.58137 -18.34837 -18.10642 -17.49388 -17.08543 -16.79705 -16.30668 -15.98056 -15.80887 -15.70324 -15.61600 -15.20810 -15.00355 -14.68595 -14.36436 -14.06209 -14.00915 -13.59023 -13.49126 -13.20323 -13.12189 -12.96296 -12.80467 -12.73251 -12.57625 -12.50030 -12.15548 -12.05861 -11.97942 -11.82356 -11.73314 -11.61745 -11.55625 -11.25409 -11.09114 -10.92028 -10.43687 -9.66335 -9.00336 -8.76806 -8.05570 -6.27267 0.34701 0.50549 1.34279 1.36552 1.45168 2.13070 2.38384 2.42112 2.80774 3.13455 3.45115 3.74679 3.82907 3.90001 4.03861 4.05274 4.13870 4.26047 4.32665 4.39798 4.40490 4.48540 4.54640 4.58745 4.60821 4.71746 4.75059 4.76704 4.84410 4.92304 4.94338 4.95122 5.02131 5.03894 5.16126 5.27931 5.29729 5.39174 5.42137 5.44513 5.51059 5.57660 5.63168 5.78775 5.82598 6.06072 6.15928 6.20039 6.34562 6.60029 6.71289 6.92175 7.43186 8.89981 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.003504 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.248351 B = 7987.904894 C = 8988.965360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.221 3.779 4 H 0.001 0.999 5 C -0.554 4.554 6 H 0.046 0.954 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.943 3.057 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.279 1.279 13 N -0.518 5.518 14 C 0.056 3.944 15 C -0.102 4.102 16 C -0.133 4.133 17 C 0.101 3.899 18 H 0.087 0.913 19 O -0.328 6.328 20 C 0.074 3.926 21 C -0.180 4.180 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.173 4.173 25 C 0.068 3.932 26 O -0.342 6.342 27 C 0.019 3.981 28 C 0.076 3.924 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.029 0.971 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.262 0.738 35 H 0.072 0.928 36 H 0.014 0.986 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.086 0.914 41 H 0.144 0.856 42 H 0.155 0.845 43 H 0.159 0.841 44 H 0.158 0.842 45 H 0.108 0.892 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.052 0.948 49 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.175 14.352 15.734 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C 0.114 3.886 4 H 0.019 0.981 5 C -0.593 4.593 6 H 0.065 0.935 7 C -0.176 4.176 8 N -0.547 5.547 9 Si 0.769 3.231 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.204 1.204 13 N -0.243 5.243 14 C -0.072 4.072 15 C -0.140 4.140 16 C -0.171 4.171 17 C 0.045 3.955 18 H 0.105 0.895 19 O -0.242 6.242 20 C 0.029 3.971 21 C -0.198 4.198 22 C -0.134 4.134 23 C -0.137 4.137 24 C -0.191 4.191 25 C 0.023 3.977 26 O -0.257 6.257 27 C -0.075 4.075 28 C -0.053 4.053 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.033 0.967 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.162 0.838 42 H 0.172 0.828 43 H 0.176 0.824 44 H 0.175 0.825 45 H 0.126 0.874 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -9.356 14.160 15.364 22.893 hybrid contribution 2.208 0.082 -0.943 2.403 sum -7.148 14.241 14.421 21.491 Atomic orbital electron populations 1.21577 0.96137 0.99946 1.00709 1.21424 0.94611 0.97530 1.00611 1.19061 0.91801 0.91829 0.85880 0.98098 1.21963 0.94144 1.37776 1.05383 0.93544 1.25559 1.01621 0.94927 0.95476 1.69988 1.36154 1.38830 1.09763 0.85793 0.81718 0.78318 0.77234 1.19800 1.20742 1.20397 1.62294 1.56913 1.00520 1.04576 1.22074 0.95527 0.99156 0.90447 1.21572 1.02667 0.93208 0.96548 1.22064 1.00641 0.97002 0.97368 1.22341 1.00416 0.77070 0.95678 0.89504 1.86140 1.52858 1.18568 1.66616 1.18768 0.94020 0.88220 0.96080 1.21403 0.97329 1.01706 0.99412 1.21258 0.99248 0.93551 0.99385 1.21270 0.98211 0.95394 0.98803 1.21385 0.97585 1.00464 0.99688 1.18709 0.93070 0.89958 0.95992 1.86170 1.52121 1.24828 1.62548 1.23310 1.03774 0.76898 1.03505 1.21618 0.97810 0.89885 0.95943 0.93343 0.92142 0.95136 0.91907 0.94443 0.92863 0.90946 0.96740 0.89279 0.89922 0.93032 0.89562 0.83844 0.82783 0.82383 0.82496 0.87390 0.91407 0.91257 0.92955 0.96739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 9.80 71.98 0.71 -4.27 16 2 C -0.10 -4.88 5.16 30.59 0.16 -4.72 16 3 C 0.22 11.19 1.71 44.17 0.08 11.27 16 4 H 0.00 0.06 7.99 -2.39 -0.02 0.04 16 5 C -0.55 -30.62 7.23 25.60 0.19 -30.44 16 6 H 0.05 2.62 5.84 -2.91 -0.02 2.60 16 7 C 0.02 1.36 5.29 84.66 0.45 1.80 16 8 N -0.91 -52.35 11.29 21.45 0.24 -52.10 16 9 Si 0.94 44.63 29.54 68.60 2.03 46.65 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 13 N -0.52 -21.93 4.06 -875.24 -3.55 -25.49 16 14 C 0.06 2.12 4.79 86.37 0.41 2.54 16 15 C -0.10 -2.86 6.11 30.69 0.19 -2.67 16 16 C -0.13 -3.90 5.28 30.67 0.16 -3.74 16 17 C 0.10 3.43 2.27 30.65 0.07 3.50 16 18 H 0.09 2.71 6.32 -2.39 -0.02 2.70 16 19 O -0.33 -12.03 9.59 -79.60 -0.76 -12.80 16 20 C 0.07 2.29 6.61 22.57 0.15 2.44 16 21 C -0.18 -4.34 8.27 22.35 0.18 -4.16 16 22 C -0.12 -2.11 10.04 22.27 0.22 -1.89 16 23 C -0.12 -1.95 10.04 22.27 0.22 -1.73 16 24 C -0.17 -3.41 9.04 22.35 0.20 -3.21 16 25 C 0.07 1.90 6.70 22.57 0.15 2.06 16 26 O -0.34 -10.11 10.28 -79.66 -0.82 -10.93 16 27 C 0.02 0.33 9.81 113.37 1.11 1.45 16 28 C 0.08 3.24 4.84 86.32 0.42 3.65 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 2.21 7.75 -2.38 -0.02 2.20 16 31 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 3.37 5.95 -2.39 -0.01 3.36 16 33 H 0.04 1.70 6.22 -2.39 -0.01 1.69 16 34 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 35 H 0.07 2.76 6.12 -2.39 -0.01 2.74 16 36 H 0.01 0.62 6.37 -2.39 -0.02 0.60 16 37 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.09 2.11 6.90 -2.39 -0.02 2.09 16 41 H 0.14 3.19 5.40 -2.91 -0.02 3.17 16 42 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 43 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.16 2.12 6.30 -2.91 -0.02 2.10 16 45 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.07 0.93 7.65 -2.38 -0.02 0.91 16 47 H 0.07 0.92 7.68 -2.39 -0.02 0.90 16 48 H 0.05 2.35 8.02 -2.39 -0.02 2.33 16 49 H 0.01 0.69 7.29 -2.39 -0.02 0.67 16 Total: -1.00 -67.34 374.14 3.14 -64.20 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.93 Total: 18.57 kcal Atomic # 6 Polarization: -33.19 SS G_CDS: 5.07 Total: -28.12 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -3.31 Total: -77.59 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -1.58 Total: -23.72 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -67.34 3.14 -64.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255171957.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.339 kcal (2) G-P(sol) polarization free energy of solvation -67.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds