Wall clock time and date at job start Tue Mar 31 2020 12:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47143 * 2 1 4 4 H 1.08994 * 109.47296 * 304.99696 * 3 2 1 5 5 C 1.50709 * 109.47085 * 184.99966 * 3 2 1 6 6 H 1.08003 * 119.99705 * 239.99804 * 5 3 2 7 7 C 1.37873 * 119.99948 * 59.99767 * 5 3 2 8 8 N 1.31517 * 119.99695 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99938 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47155 * 90.00520 * 9 7 5 11 11 H 1.48502 * 109.47149 * 209.99799 * 9 7 5 12 12 H 1.48500 * 109.47489 * 330.00359 * 9 7 5 13 13 N 1.46903 * 109.47284 * 65.00111 * 3 2 1 14 14 C 1.46850 * 110.99999 * 65.78946 * 13 3 2 15 15 C 1.53041 * 109.51820 * 185.83948 * 14 13 3 16 16 C 1.53118 * 109.28113 * 300.81965 * 15 14 13 17 17 C 1.53114 * 109.16066 * 57.65670 * 16 15 14 18 18 H 1.09000 * 109.53849 * 62.30795 * 17 16 15 19 19 O 1.42902 * 109.50584 * 182.40802 * 17 16 15 20 20 C 1.35902 * 116.99591 * 274.91145 * 19 17 16 21 21 C 1.38796 * 120.02564 * 185.69599 * 20 19 17 22 22 C 1.38155 * 120.05239 * 180.29840 * 21 20 19 23 23 C 1.38198 * 120.10771 * 359.72214 * 22 21 20 24 24 C 1.38748 * 120.05399 * 359.97438 * 23 22 21 25 25 O 1.35903 * 120.02117 * 180.02562 * 24 23 22 26 26 C 1.42894 * 117.00277 * 0.02562 * 25 24 23 27 27 C 1.38606 * 120.02756 * 5.41883 * 20 19 17 28 28 C 1.46846 * 110.99833 * 189.99872 * 13 3 2 29 29 H 1.09002 * 109.47039 * 300.00063 * 1 2 3 30 30 H 1.08999 * 109.47257 * 59.99771 * 1 2 3 31 31 H 1.08999 * 109.47095 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47062 * 239.99321 * 2 1 3 33 33 H 1.09011 * 109.46891 * 120.00129 * 2 1 3 34 34 H 0.97005 * 119.99174 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.46168 * 305.85381 * 14 13 3 36 36 H 1.09000 * 109.46269 * 65.82736 * 14 13 3 37 37 H 1.08991 * 109.50389 * 60.76557 * 15 14 13 38 38 H 1.09005 * 109.49997 * 180.87967 * 15 14 13 39 39 H 1.09008 * 109.52004 * 297.75321 * 16 15 14 40 40 H 1.08994 * 109.52089 * 177.56379 * 16 15 14 41 41 H 1.08004 * 119.97357 * 0.02562 * 21 20 19 42 42 H 1.08001 * 119.94434 * 179.70113 * 22 21 20 43 43 H 1.07999 * 119.96611 * 180.02562 * 23 22 21 44 44 H 1.09004 * 109.47220 * 180.02562 * 26 25 24 45 45 H 1.08995 * 109.47461 * 300.00683 * 26 25 24 46 46 H 1.09006 * 109.47020 * 60.00562 * 26 25 24 47 47 H 1.07999 * 120.05569 * 359.97298 * 27 20 19 48 48 H 1.09007 * 109.46503 * 54.14251 * 28 13 3 49 49 H 1.09003 * 109.46538 * 294.17526 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4061 0.3373 -2.1732 9 14 6.0049 0.8811 -1.3817 10 1 6.5549 -0.3504 -0.7602 11 1 6.3829 0.9221 -2.8172 12 1 6.5570 2.0736 -0.6901 13 7 1.6514 2.0992 1.2552 14 6 2.3292 1.4834 2.4032 15 6 1.7931 2.0927 3.7007 16 6 2.0394 3.6039 3.6892 17 6 1.3639 4.2138 2.4579 18 1 0.2873 4.0541 2.5162 19 8 1.6363 5.6158 2.4096 20 6 0.8168 6.4285 3.1272 21 6 0.9490 7.8069 3.0325 22 6 0.1204 8.6336 3.7664 23 6 -0.8458 8.0906 4.5920 24 6 -0.9860 6.7134 4.6853 25 8 -1.9367 6.1802 5.4970 26 6 -2.7569 7.0965 6.2246 27 6 -0.1555 5.8817 3.9498 28 6 1.9124 3.5431 1.1964 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.8293 -0.0612 -2.9498 35 1 2.1425 0.4096 2.4019 36 1 3.4016 1.6656 2.3323 37 1 0.7234 1.8989 3.7789 38 1 2.3076 1.6466 4.5519 39 1 3.1114 3.7980 3.6502 40 1 1.6205 4.0481 4.5921 41 1 1.7033 8.2336 2.3878 42 1 0.2280 9.7058 3.6950 43 1 -1.4926 8.7389 5.1644 44 1 -3.4714 6.5412 6.8322 45 1 -2.1302 7.7105 6.8715 46 1 -3.2946 7.7371 5.5254 47 1 -0.2632 4.8094 4.0211 48 1 1.4230 3.9652 0.3186 49 1 2.9867 3.7156 1.1311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172936.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:57 Heat of formation + Delta-G solvation = -66.469074 kcal Electronic energy + Delta-G solvation = -27684.621654 eV Core-core repulsion = 23997.508140 eV Total energy + Delta-G solvation = -3687.113514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.65124 -40.49078 -39.34774 -37.49117 -35.92582 -33.78540 -32.42803 -31.69836 -31.48038 -29.91548 -28.47835 -28.07259 -25.69453 -24.76593 -23.92961 -23.13768 -22.76175 -21.20909 -20.72900 -19.69240 -18.25792 -17.79766 -17.23104 -17.11698 -16.88344 -16.69690 -16.31571 -16.03268 -15.88611 -15.27808 -15.13909 -14.98326 -14.63150 -14.39319 -14.10437 -13.99430 -13.60221 -13.50027 -13.24399 -13.14433 -13.08132 -12.86084 -12.77087 -12.65908 -12.52586 -12.16063 -12.12369 -11.93889 -11.76065 -11.68900 -11.63401 -11.55899 -11.23582 -11.09868 -10.92396 -10.43278 -9.56287 -9.03585 -8.99116 -8.04848 -6.26638 0.37617 0.46316 1.35676 1.38022 1.46383 2.04145 2.37001 2.39384 2.77734 3.14424 3.45426 3.73288 3.80413 3.86922 4.03074 4.09818 4.16088 4.25175 4.28905 4.37475 4.43478 4.50440 4.55570 4.58232 4.60100 4.67160 4.75128 4.77297 4.82895 4.91232 4.92435 4.93627 5.00474 5.01577 5.15114 5.25703 5.29687 5.34958 5.42602 5.43931 5.46597 5.50683 5.62409 5.67199 5.79221 6.05626 6.16345 6.32711 6.35648 6.50476 6.62451 6.92712 7.43981 8.90842 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018789 B = 0.003119 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.908549 B = 8975.693716 C = 9677.032844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 C 0.222 3.778 4 H 0.003 0.997 5 C -0.553 4.553 6 H 0.049 0.951 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.944 3.056 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.276 1.276 13 N -0.522 5.522 14 C 0.058 3.942 15 C -0.104 4.104 16 C -0.133 4.133 17 C 0.100 3.900 18 H 0.082 0.918 19 O -0.323 6.323 20 C 0.155 3.845 21 C -0.206 4.206 22 C -0.036 4.036 23 C -0.247 4.247 24 C 0.155 3.845 25 O -0.336 6.336 26 C 0.018 3.982 27 C -0.260 4.260 28 C 0.076 3.924 29 H 0.057 0.943 30 H 0.030 0.970 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.036 0.964 34 H 0.262 0.738 35 H 0.071 0.929 36 H 0.018 0.982 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.135 0.865 42 H 0.165 0.835 43 H 0.157 0.843 44 H 0.117 0.883 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.133 0.867 48 H 0.057 0.943 49 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.343 13.829 16.767 24.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C 0.115 3.885 4 H 0.021 0.979 5 C -0.592 4.592 6 H 0.067 0.933 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.771 3.229 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.201 1.201 13 N -0.247 5.247 14 C -0.070 4.070 15 C -0.141 4.141 16 C -0.171 4.171 17 C 0.044 3.956 18 H 0.100 0.900 19 O -0.236 6.236 20 C 0.109 3.891 21 C -0.225 4.225 22 C -0.054 4.054 23 C -0.265 4.265 24 C 0.109 3.891 25 O -0.250 6.250 26 C -0.076 4.076 27 C -0.279 4.279 28 C -0.053 4.053 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.037 0.963 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.153 0.847 42 H 0.182 0.818 43 H 0.174 0.826 44 H 0.135 0.865 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.151 0.849 48 H 0.075 0.925 49 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -10.728 13.517 16.571 23.925 hybrid contribution 2.004 -0.104 -0.785 2.155 sum -8.724 13.414 15.786 22.477 Atomic orbital electron populations 1.21579 0.96271 0.99903 1.00658 1.21434 0.94505 0.97715 1.00594 1.19052 0.91895 0.91717 0.85806 0.97914 1.21966 0.94047 1.37783 1.05378 0.93286 1.25572 1.01663 0.94933 0.95492 1.69998 1.36195 1.38875 1.09778 0.85774 0.81633 0.78352 0.77184 1.19998 1.20863 1.20117 1.62277 1.57104 1.00722 1.04616 1.22029 0.95672 0.99084 0.90253 1.21543 1.02363 0.93408 0.96819 1.22054 1.00919 0.96912 0.97193 1.22369 1.00362 0.76890 0.95959 0.89971 1.86079 1.52515 1.18887 1.66161 1.19004 0.88918 0.91062 0.90134 1.20659 1.05463 0.89706 1.06656 1.21089 0.91579 1.00873 0.91875 1.21450 1.05032 0.93051 1.06991 1.18840 0.88306 0.92141 0.89824 1.86054 1.45137 1.37808 1.56012 1.23381 0.94018 0.94445 0.95775 1.20555 1.01456 1.00872 1.05057 1.21643 0.98180 0.89766 0.95718 0.92347 0.95033 0.93410 0.91851 0.94524 0.92882 0.91074 0.96323 0.90553 0.89320 0.92246 0.90154 0.84664 0.81798 0.82554 0.86487 0.91281 0.91426 0.84935 0.92477 0.96043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 9.80 71.98 0.71 -4.33 16 2 C -0.10 -4.91 5.16 30.59 0.16 -4.75 16 3 C 0.22 11.11 1.70 44.17 0.08 11.18 16 4 H 0.00 0.17 7.99 -2.39 -0.02 0.15 16 5 C -0.55 -30.03 7.23 25.60 0.19 -29.85 16 6 H 0.05 2.70 5.84 -2.91 -0.02 2.68 16 7 C 0.02 1.29 5.29 84.65 0.45 1.74 16 8 N -0.91 -51.97 11.29 21.45 0.24 -51.73 16 9 Si 0.94 43.98 29.54 68.60 2.03 46.00 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 N -0.52 -21.95 4.06 -875.47 -3.55 -25.50 16 14 C 0.06 2.19 4.78 86.33 0.41 2.60 16 15 C -0.10 -3.00 6.09 30.65 0.19 -2.81 16 16 C -0.13 -3.95 5.28 30.67 0.16 -3.79 16 17 C 0.10 3.36 2.27 30.65 0.07 3.43 16 18 H 0.08 2.69 6.31 -2.39 -0.02 2.67 16 19 O -0.32 -10.93 9.80 -92.45 -0.91 -11.83 16 20 C 0.15 4.52 6.60 22.49 0.15 4.66 16 21 C -0.21 -5.00 9.98 22.38 0.22 -4.78 16 22 C -0.04 -0.66 10.04 22.24 0.22 -0.44 16 23 C -0.25 -4.50 9.04 22.38 0.20 -4.30 16 24 C 0.15 3.64 6.68 22.49 0.15 3.79 16 25 O -0.34 -7.22 10.49 -92.46 -0.97 -8.19 16 26 C 0.02 0.20 9.81 113.37 1.11 1.31 16 27 C -0.26 -7.16 8.21 22.46 0.18 -6.98 16 28 C 0.08 3.10 4.84 86.33 0.42 3.52 16 29 H 0.06 2.18 7.75 -2.39 -0.02 2.16 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 3.39 5.95 -2.39 -0.01 3.38 16 33 H 0.04 1.67 6.22 -2.38 -0.01 1.66 16 34 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 35 H 0.07 2.73 6.12 -2.39 -0.01 2.71 16 36 H 0.02 0.79 6.37 -2.39 -0.02 0.77 16 37 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.08 2.12 6.91 -2.39 -0.02 2.10 16 41 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 42 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 43 H 0.16 1.81 6.29 -2.91 -0.02 1.80 16 44 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 46 H 0.07 0.60 7.66 -2.38 -0.02 0.58 16 47 H 0.13 3.73 5.40 -2.91 -0.02 3.71 16 48 H 0.06 2.45 8.02 -2.38 -0.02 2.43 16 49 H 0.02 0.97 7.29 -2.39 -0.02 0.96 16 Total: -1.00 -63.53 374.40 2.84 -60.69 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.93 Total: 20.36 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 5.07 Total: -29.79 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -3.31 Total: -77.24 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -1.88 Total: -20.03 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -63.53 2.84 -60.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172936.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.783 kcal (2) G-P(sol) polarization free energy of solvation -63.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds