Wall clock time and date at job start Tue Mar 31 2020 12:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47201 * 2 1 4 4 H 1.09000 * 109.47153 * 305.59048 * 3 2 1 5 5 C 1.50701 * 109.46872 * 185.59497 * 3 2 1 6 6 H 1.08003 * 119.99818 * 239.99886 * 5 3 2 7 7 C 1.37877 * 120.00507 * 59.99738 * 5 3 2 8 8 N 1.31516 * 119.99442 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00332 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47114 * 90.00519 * 9 7 5 11 11 H 1.48497 * 109.47181 * 210.00127 * 9 7 5 12 12 H 1.48494 * 109.47139 * 330.00268 * 9 7 5 13 13 N 1.46903 * 109.47244 * 65.59489 * 3 2 1 14 14 C 1.47443 * 110.99942 * 188.27324 * 13 3 2 15 15 C 1.54316 * 107.23433 * 236.74281 * 14 13 3 16 16 C 1.55147 * 103.17445 * 337.62794 * 15 14 13 17 17 C 1.47842 * 110.99799 * 67.42891 * 13 3 2 18 18 H 1.08997 * 110.37472 * 27.42562 * 17 13 3 19 19 C 1.50697 * 110.37599 * 265.19430 * 17 13 3 20 20 C 1.38258 * 119.92620 * 320.00002 * 19 17 13 21 21 C 1.38244 * 120.14700 * 179.97438 * 20 19 17 22 22 C 1.38562 * 119.99637 * 0.02753 * 21 20 19 23 23 O 1.35994 * 120.07139 * 180.02562 * 22 21 20 24 24 C 1.42909 * 116.99739 * 0.02562 * 23 22 21 25 25 C 1.39149 * 119.86000 * 359.97438 * 22 21 20 26 26 O 1.35995 * 120.07847 * 179.97438 * 25 22 21 27 27 C 1.42901 * 117.00163 * 179.97438 * 26 25 22 28 28 C 1.38234 * 119.92905 * 139.72762 * 19 17 13 29 29 H 1.09000 * 109.47344 * 185.96877 * 1 2 3 30 30 H 1.09005 * 109.46831 * 305.96958 * 1 2 3 31 31 H 1.09001 * 109.47453 * 65.96313 * 1 2 3 32 32 H 1.09002 * 109.46497 * 239.99923 * 2 1 3 33 33 H 1.09000 * 109.47033 * 120.00089 * 2 1 3 34 34 H 0.97006 * 119.99861 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.88544 * 117.33401 * 14 13 3 36 36 H 1.09002 * 110.02265 * 356.22146 * 14 13 3 37 37 H 1.08994 * 110.70887 * 96.09758 * 15 14 13 38 38 H 1.08998 * 110.70179 * 219.16214 * 15 14 13 39 39 H 1.08997 * 110.98863 * 153.83378 * 16 15 14 40 40 H 1.08994 * 110.99139 * 277.64828 * 16 15 14 41 41 H 1.08005 * 119.92554 * 359.97438 * 20 19 17 42 42 H 1.07994 * 119.99646 * 180.02562 * 21 20 19 43 43 H 1.08995 * 109.47029 * 59.99815 * 24 23 22 44 44 H 1.09003 * 109.46814 * 180.02562 * 24 23 22 45 45 H 1.09002 * 109.46650 * 299.99771 * 24 23 22 46 46 H 1.08991 * 109.47362 * 300.00747 * 27 26 25 47 47 H 1.09002 * 109.46872 * 60.00483 * 27 26 25 48 48 H 1.09002 * 109.46577 * 180.02562 * 27 26 25 49 49 H 1.08006 * 119.99981 * 0.02562 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9844 -0.8357 5 6 3.5406 1.4447 -0.1385 6 1 4.1535 1.8866 0.6332 7 6 4.1312 0.8825 -1.2504 8 7 3.3849 0.3449 -2.1903 9 14 5.9912 0.8859 -1.4224 10 1 6.5472 -0.3477 -0.8105 11 1 6.3552 0.9319 -2.8613 12 1 6.5500 2.0760 -0.7321 13 7 1.6637 2.0949 1.2613 14 6 1.9633 3.5380 1.2195 15 6 2.8973 3.8456 2.4088 16 6 2.6190 2.6756 3.3889 17 6 2.3870 1.4968 2.4035 18 1 3.3399 1.0824 2.0744 19 6 1.5477 0.4274 3.0540 20 6 0.1878 0.6193 3.2127 21 6 -0.5865 -0.3589 3.8084 22 6 0.0002 -1.5345 4.2483 23 8 -0.7601 -2.4980 4.8340 24 6 -2.1582 -2.2318 4.9632 25 6 1.3690 -1.7277 4.0887 26 8 1.9496 -2.8796 4.5193 27 6 3.3590 -3.0090 4.3219 28 6 2.1384 -0.7455 3.4856 29 1 -0.3634 -1.0221 0.1069 30 1 -0.3633 0.6036 0.8318 31 1 -0.3634 0.4186 -0.9385 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8003 -0.0503 -2.9728 35 1 1.0410 4.1110 1.3145 36 1 2.4609 3.7890 0.2827 37 1 3.9399 3.8423 2.0910 38 1 2.6380 4.8008 2.8654 39 1 3.4809 2.4894 4.0295 40 1 1.7266 2.8688 3.9841 41 1 -0.2707 1.5354 2.8706 42 1 -1.6487 -0.2067 3.9307 43 1 -2.5914 -2.0771 3.9751 44 1 -2.6462 -3.0786 5.4458 45 1 -2.3032 -1.3365 5.5677 46 1 3.5839 -2.9478 3.2572 47 1 3.8748 -2.2062 4.8488 48 1 3.6931 -3.9716 4.7089 49 1 3.2003 -0.8946 3.3568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173234.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:27 Heat of formation + Delta-G solvation = -58.152165 kcal Electronic energy + Delta-G solvation = -29036.366079 eV Core-core repulsion = 25349.613213 eV Total energy + Delta-G solvation = -3686.752866 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.56464 -40.21234 -39.28959 -37.46184 -35.85243 -33.56274 -32.15071 -31.20560 -30.99994 -29.08764 -28.20165 -28.01982 -27.15779 -24.81779 -23.65239 -22.86148 -21.82412 -21.72642 -20.59913 -19.31989 -18.37315 -17.68428 -17.57541 -16.97446 -16.90452 -16.35142 -16.06983 -15.97335 -15.58523 -15.27633 -15.20027 -14.72834 -14.43375 -14.20823 -13.95130 -13.74209 -13.49484 -13.37789 -13.13661 -12.96556 -12.86879 -12.72134 -12.50499 -12.42844 -12.36793 -12.01896 -12.01167 -11.96761 -11.92237 -11.77197 -11.54122 -11.41452 -11.34459 -11.14395 -10.83398 -10.40389 -9.47862 -8.89970 -8.55257 -8.00065 -6.21067 0.45404 0.62215 1.35738 1.38645 1.46064 2.40609 2.43498 2.47754 2.85874 3.18549 3.48974 3.91454 3.98477 4.04069 4.20010 4.23028 4.30358 4.38030 4.40116 4.46993 4.48684 4.58122 4.62643 4.65227 4.71404 4.75404 4.79079 4.79734 4.85399 4.86024 4.97914 5.04445 5.11037 5.18060 5.25179 5.29664 5.37238 5.47274 5.48907 5.51635 5.59019 5.69044 5.83524 5.87508 5.89662 6.13071 6.19680 6.25586 6.46587 6.67848 6.73726 7.02020 7.48859 8.95027 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012906 B = 0.004897 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.046820 B = 5715.863071 C = 6221.429508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 C 0.222 3.778 4 H -0.001 1.001 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.939 3.061 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.513 5.513 14 C 0.046 3.954 15 C -0.128 4.128 16 C -0.110 4.110 17 C 0.109 3.891 18 H 0.052 0.948 19 C -0.047 4.047 20 C -0.086 4.086 21 C -0.170 4.170 22 C 0.075 3.925 23 O -0.333 6.333 24 C 0.019 3.981 25 C 0.077 3.923 26 O -0.329 6.329 27 C 0.022 3.978 28 C -0.176 4.176 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.052 0.948 33 H 0.033 0.967 34 H 0.258 0.742 35 H 0.076 0.924 36 H 0.032 0.968 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.136 0.864 42 H 0.157 0.843 43 H 0.059 0.941 44 H 0.116 0.884 45 H 0.067 0.933 46 H 0.046 0.954 47 H 0.062 0.938 48 H 0.122 0.878 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.388 -0.423 14.973 16.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.138 4.138 3 C 0.114 3.886 4 H 0.017 0.983 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.766 3.234 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.194 1.194 13 N -0.237 5.237 14 C -0.082 4.082 15 C -0.167 4.167 16 C -0.148 4.148 17 C 0.001 3.999 18 H 0.070 0.930 19 C -0.048 4.048 20 C -0.105 4.105 21 C -0.188 4.188 22 C 0.030 3.970 23 O -0.248 6.248 24 C -0.075 4.075 25 C 0.032 3.968 26 O -0.244 6.244 27 C -0.072 4.072 28 C -0.195 4.195 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.154 0.846 42 H 0.174 0.826 43 H 0.078 0.922 44 H 0.134 0.866 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.140 0.860 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.947 -0.922 15.003 16.559 hybrid contribution 2.205 0.060 -1.252 2.536 sum -4.742 -0.863 13.751 14.571 Atomic orbital electron populations 1.21636 0.96926 0.99315 1.00597 1.21357 0.94078 0.98466 0.99905 1.19117 0.91781 0.91309 0.86384 0.98268 1.21991 0.93964 1.37287 1.04772 0.92661 1.25579 1.01243 0.95208 0.95787 1.70025 1.36022 1.39374 1.09717 0.85845 0.82103 0.78406 0.77035 1.20462 1.21335 1.19443 1.63699 1.54471 1.02088 1.03392 1.22658 0.98195 0.89765 0.97586 1.22681 0.98938 0.99314 0.95736 1.22776 1.02093 0.93262 0.96632 1.21467 0.94432 0.93509 0.90541 0.93005 1.19485 0.94673 0.93869 0.96764 1.20746 0.92609 0.99551 0.97572 1.21261 1.01389 0.92849 1.03303 1.18358 0.88312 0.90351 1.00017 1.86095 1.21746 1.41101 1.75876 1.23304 0.77727 1.04153 1.02325 1.18348 0.90312 0.87607 1.00522 1.86071 1.24859 1.35375 1.78079 1.23231 0.78078 1.04435 1.01502 1.20968 1.00137 0.94425 1.04000 0.95081 0.91155 0.95355 0.92948 0.94817 0.93219 0.90541 0.94955 0.93087 0.89015 0.90674 0.89817 0.84620 0.82597 0.92214 0.86565 0.91484 0.93499 0.91926 0.86000 0.85407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.30 9.81 71.98 0.71 -4.60 16 2 C -0.10 -4.81 4.89 30.59 0.15 -4.66 16 3 C 0.22 10.77 1.51 44.17 0.07 10.84 16 4 H 0.00 -0.03 8.08 -2.39 -0.02 -0.05 16 5 C -0.54 -28.26 6.56 25.60 0.17 -28.09 16 6 H 0.06 2.86 6.50 -2.91 -0.02 2.84 16 7 C 0.02 1.16 5.29 84.65 0.45 1.61 16 8 N -0.91 -52.09 11.29 21.45 0.24 -51.85 16 9 Si 0.94 42.99 29.54 68.60 2.03 45.01 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 N -0.51 -20.20 3.50 -843.34 -2.95 -23.15 16 14 C 0.05 1.64 6.40 86.65 0.55 2.20 16 15 C -0.13 -3.79 6.93 31.78 0.22 -3.57 16 16 C -0.11 -3.18 6.51 32.15 0.21 -2.97 16 17 C 0.11 3.96 1.81 44.81 0.08 4.05 16 18 H 0.05 2.24 5.59 -2.39 -0.01 2.23 16 19 C -0.05 -1.60 3.24 -19.86 -0.06 -1.66 16 20 C -0.09 -2.65 7.26 22.28 0.16 -2.49 16 21 C -0.17 -4.72 9.04 22.35 0.20 -4.52 16 22 C 0.07 2.36 6.70 22.57 0.15 2.51 16 23 O -0.33 -9.75 10.28 -79.62 -0.82 -10.57 16 24 C 0.02 0.35 9.81 113.37 1.11 1.46 16 25 C 0.08 2.62 6.70 22.57 0.15 2.78 16 26 O -0.33 -10.76 10.28 -79.63 -0.82 -11.58 16 27 C 0.02 0.55 9.81 113.37 1.11 1.66 16 28 C -0.18 -6.03 8.08 22.35 0.18 -5.85 16 29 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 2.69 5.49 -2.38 -0.01 2.68 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 2.91 5.94 -2.39 -0.01 2.89 16 33 H 0.03 1.62 5.51 -2.39 -0.01 1.61 16 34 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 35 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.03 1.33 7.18 -2.39 -0.02 1.31 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.08 2.18 7.92 -2.39 -0.02 2.16 16 41 H 0.14 4.01 7.61 -2.91 -0.02 3.99 16 42 H 0.16 3.30 6.30 -2.91 -0.02 3.29 16 43 H 0.06 1.01 7.66 -2.39 -0.02 0.99 16 44 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.07 1.00 7.66 -2.39 -0.02 0.99 16 46 H 0.05 1.23 7.65 -2.39 -0.02 1.21 16 47 H 0.06 1.39 7.67 -2.39 -0.02 1.37 16 48 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.13 4.26 6.28 -2.91 -0.02 4.25 16 Total: -1.00 -63.81 373.05 4.22 -59.59 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.93 Total: 23.87 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 5.61 Total: -31.32 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -2.71 Total: -75.01 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -1.64 Total: -22.14 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -63.81 4.22 -59.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173234.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.434 kcal (2) G-P(sol) polarization free energy of solvation -63.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds