Wall clock time and date at job start Tue Mar 31 2020 12:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47054 * 2 1 4 4 H 1.09007 * 109.46674 * 308.10024 * 3 2 1 5 5 C 1.50698 * 109.47122 * 188.10501 * 3 2 1 6 6 H 1.08003 * 119.99878 * 239.99837 * 5 3 2 7 7 C 1.37874 * 120.00350 * 59.99749 * 5 3 2 8 8 N 1.31510 * 119.99832 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00060 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47246 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46868 * 120.00223 * 9 7 5 12 12 H 1.48505 * 109.47040 * 240.00131 * 9 7 5 13 13 N 1.46893 * 109.47010 * 68.10033 * 3 2 1 14 14 C 1.47845 * 111.00376 * 299.83778 * 13 3 2 15 15 C 1.54907 * 104.89277 * 213.58222 * 14 13 3 16 16 C 1.55432 * 101.52354 * 37.06064 * 15 14 13 17 17 C 1.47444 * 110.99929 * 178.99236 * 13 3 2 18 18 H 1.08998 * 109.88839 * 242.66608 * 17 13 3 19 19 C 1.50697 * 109.88993 * 3.69232 * 17 13 3 20 20 C 1.38259 * 119.92735 * 247.53909 * 19 17 13 21 21 C 1.38239 * 120.14553 * 179.72603 * 20 19 17 22 22 C 1.38563 * 119.99872 * 0.54103 * 21 20 19 23 23 O 1.36001 * 120.06962 * 179.70717 * 22 21 20 24 24 C 1.42898 * 117.00305 * 0.02572 * 23 22 21 25 25 C 1.39148 * 119.85556 * 359.73029 * 22 21 20 26 26 O 1.35994 * 120.07232 * 180.02562 * 25 22 21 27 27 C 1.42909 * 116.99996 * 179.97438 * 26 25 22 28 28 C 1.38241 * 119.93078 * 67.80793 * 19 17 13 29 29 H 1.09000 * 109.47450 * 41.11622 * 1 2 3 30 30 H 1.09001 * 109.47410 * 161.11797 * 1 2 3 31 31 H 1.09003 * 109.47210 * 281.11375 * 1 2 3 32 32 H 1.09001 * 109.47098 * 240.00536 * 2 1 3 33 33 H 1.08999 * 109.47372 * 120.00307 * 2 1 3 34 34 H 0.97001 * 120.00045 * 180.02562 * 8 7 5 35 35 H 1.09004 * 110.37084 * 332.45840 * 14 13 3 36 36 H 1.08990 * 110.37563 * 94.69068 * 14 13 3 37 37 H 1.09000 * 110.99086 * 155.21404 * 15 14 13 38 38 H 1.09003 * 110.98900 * 279.02941 * 15 14 13 39 39 H 1.09002 * 110.69357 * 205.97156 * 16 15 14 40 40 H 1.08999 * 110.83977 * 82.83131 * 16 15 14 41 41 H 1.08004 * 119.92332 * 359.97374 * 20 19 17 42 42 H 1.08004 * 119.99984 * 180.29720 * 21 20 19 43 43 H 1.08995 * 109.47231 * 59.99615 * 24 23 22 44 44 H 1.08998 * 109.47071 * 180.02562 * 24 23 22 45 45 H 1.09000 * 109.46733 * 300.00126 * 24 23 22 46 46 H 1.09000 * 109.46592 * 299.99894 * 27 26 25 47 47 H 1.09002 * 109.47035 * 59.99733 * 27 26 25 48 48 H 1.08996 * 109.46941 * 180.02562 * 27 26 25 49 49 H 1.08010 * 119.99512 * 0.02562 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5632 1.9964 -0.8088 5 6 3.5336 1.4473 -0.2003 6 1 4.1779 1.8781 0.5518 7 6 4.0776 0.9017 -1.3437 8 7 3.2930 0.3775 -2.2597 9 14 5.9291 0.9070 -1.5916 10 1 6.5830 1.5498 -0.4237 11 1 6.4148 -0.4902 -1.7233 12 1 6.2612 1.6649 -2.8247 13 7 1.7162 2.0763 1.2850 14 6 0.2557 2.0933 1.5144 15 6 -0.0095 3.4049 2.2947 16 6 1.0049 4.3744 1.6263 17 6 2.2147 3.4632 1.3306 18 1 2.9573 3.5644 2.1220 19 6 2.8264 3.8320 0.0037 20 6 4.1880 4.0528 -0.0907 21 6 4.7546 4.3858 -1.3068 22 6 3.9561 4.5100 -2.4324 23 8 4.5113 4.8434 -3.6283 24 6 5.9249 5.0508 -3.6521 25 6 2.5850 4.2933 -2.3363 26 8 1.7972 4.4134 -3.4383 27 6 0.3987 4.1759 -3.2651 28 6 2.0241 3.9543 -1.1155 29 1 -0.3634 0.7742 -0.6758 30 1 -0.3634 -0.9724 -0.3326 31 1 -0.3634 0.1981 1.0084 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.6757 -0.0067 -3.0640 35 1 -0.2776 2.1029 0.5638 36 1 -0.0451 1.2306 2.1087 37 1 -1.0342 3.7464 2.1476 38 1 0.2102 3.2797 3.3550 39 1 1.2833 5.1740 2.3128 40 1 0.5975 4.7858 0.7028 41 1 4.8107 3.9610 0.7869 42 1 5.8192 4.5531 -1.3788 43 1 6.4314 4.1380 -3.3384 44 1 6.2370 5.3107 -4.6636 45 1 6.1845 5.8623 -2.9723 46 1 0.2449 3.1588 -2.9046 47 1 -0.0029 4.8832 -2.5395 48 1 -0.1125 4.3039 -4.2193 49 1 0.9600 3.7859 -1.0381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:33 Heat of formation + Delta-G solvation = -29.259736 kcal Electronic energy + Delta-G solvation = -30306.049204 eV Core-core repulsion = 26620.549208 eV Total energy + Delta-G solvation = -3685.499996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.82660 -40.29196 -39.20803 -37.31033 -35.89168 -33.63360 -32.33494 -31.12670 -30.74457 -29.02884 -28.15145 -28.05377 -27.37464 -24.99204 -23.20540 -23.05073 -21.83754 -21.57129 -20.57034 -19.18051 -18.25309 -17.76434 -17.64086 -16.90725 -16.89381 -16.49620 -16.06928 -16.04067 -15.60180 -15.24593 -15.02976 -14.74524 -14.46101 -14.21503 -13.92672 -13.68461 -13.51004 -13.28727 -13.17037 -13.12689 -12.98035 -12.82718 -12.64298 -12.47560 -12.30610 -12.01121 -11.97331 -11.94937 -11.82664 -11.60747 -11.42610 -11.33385 -11.13514 -10.90595 -10.59157 -10.31914 -9.20860 -8.78611 -8.37042 -7.97669 -5.91184 0.63372 0.80927 1.34036 1.37604 1.43844 2.47841 2.52218 2.54318 3.00552 3.36651 3.63501 3.88380 3.99013 4.03261 4.09613 4.22906 4.30821 4.33501 4.37876 4.38720 4.43073 4.57579 4.59542 4.60990 4.64089 4.66962 4.72716 4.73436 4.83727 4.85882 4.94309 5.06926 5.12712 5.16636 5.22964 5.34236 5.37569 5.43355 5.48501 5.51406 5.58327 5.73503 5.88859 5.90888 6.00184 6.03590 6.28558 6.47268 6.54953 6.83817 6.86953 7.10861 7.65492 9.07176 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011634 B = 0.007496 C = 0.006220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.137399 B = 3734.195566 C = 4500.386675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.213 3.787 4 H 0.003 0.997 5 C -0.465 4.465 6 H 0.057 0.943 7 C 0.035 3.965 8 N -0.907 5.907 9 Si 0.904 3.096 10 H -0.257 1.257 11 H -0.296 1.296 12 H -0.290 1.290 13 N -0.526 5.526 14 C 0.030 3.970 15 C -0.121 4.121 16 C -0.130 4.130 17 C 0.116 3.884 18 H 0.080 0.920 19 C -0.035 4.035 20 C -0.087 4.087 21 C -0.183 4.183 22 C 0.066 3.934 23 O -0.338 6.338 24 C 0.024 3.976 25 C 0.081 3.919 26 O -0.336 6.336 27 C 0.030 3.970 28 C -0.147 4.147 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.027 0.973 34 H 0.248 0.752 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.124 0.876 42 H 0.132 0.868 43 H 0.035 0.965 44 H 0.119 0.881 45 H 0.071 0.929 46 H 0.036 0.964 47 H 0.065 0.935 48 H 0.118 0.882 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.383 9.936 4.548 11.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.106 3.894 4 H 0.020 0.980 5 C -0.503 4.503 6 H 0.075 0.925 7 C -0.163 4.163 8 N -0.548 5.548 9 Si 0.733 3.267 10 H -0.181 1.181 11 H -0.224 1.224 12 H -0.216 1.216 13 N -0.250 5.250 14 C -0.097 4.097 15 C -0.159 4.159 16 C -0.169 4.169 17 C 0.008 3.992 18 H 0.098 0.902 19 C -0.036 4.036 20 C -0.106 4.106 21 C -0.202 4.202 22 C 0.021 3.979 23 O -0.253 6.253 24 C -0.071 4.071 25 C 0.037 3.963 26 O -0.251 6.251 27 C -0.064 4.064 28 C -0.167 4.167 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.142 0.858 42 H 0.150 0.850 43 H 0.054 0.946 44 H 0.137 0.863 45 H 0.090 0.910 46 H 0.055 0.945 47 H 0.084 0.916 48 H 0.136 0.864 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.159 9.606 4.407 11.358 hybrid contribution 1.098 -0.459 -1.215 1.701 sum -3.061 9.148 3.192 10.160 Atomic orbital electron populations 1.22278 0.96890 0.99579 1.01670 1.21486 0.94024 0.99669 1.00202 1.19498 0.94306 0.90528 0.85045 0.97984 1.21291 0.92246 1.34382 1.02375 0.92474 1.25085 0.98751 0.96144 0.96335 1.69961 1.34666 1.41053 1.09155 0.86299 0.85249 0.76870 0.78292 1.18110 1.22373 1.21624 1.63948 1.11590 1.14635 1.34861 1.23574 0.89137 0.98366 0.98635 1.22797 0.99319 0.93806 0.99956 1.22954 0.94828 0.98066 1.01016 1.21338 0.96871 0.88362 0.92591 0.90232 1.19540 0.93386 0.95288 0.95390 1.20588 0.94476 0.98826 0.96718 1.20855 0.99140 1.07814 0.92406 1.18246 0.90072 1.03858 0.85732 1.86033 1.24576 1.85288 1.29411 1.23189 0.78290 1.00541 1.05062 1.18226 0.88316 1.02877 0.86922 1.86023 1.20341 1.86311 1.32454 1.23111 0.78571 1.00217 1.04551 1.20441 0.99524 1.05361 0.91359 0.94570 0.94497 0.90530 0.92017 0.95391 0.94216 0.94398 0.90233 0.89399 0.90065 0.89257 0.91869 0.85770 0.84984 0.94626 0.86322 0.91041 0.94526 0.91643 0.86370 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.53 8.30 71.98 0.60 -4.94 16 2 C -0.12 -5.37 5.37 30.59 0.16 -5.20 16 3 C 0.21 9.82 1.02 44.17 0.05 9.86 16 4 H 0.00 0.15 4.63 -2.38 -0.01 0.14 16 5 C -0.46 -23.61 5.12 25.60 0.13 -23.48 16 6 H 0.06 2.93 5.84 -2.91 -0.02 2.91 16 7 C 0.04 1.91 5.28 84.65 0.45 2.35 16 8 N -0.91 -52.03 11.29 21.45 0.24 -51.79 16 9 Si 0.90 44.18 28.85 68.60 1.98 46.16 16 10 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 12 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 13 N -0.53 -20.28 5.02 -844.24 -4.24 -24.52 16 14 C 0.03 0.95 4.63 86.77 0.40 1.35 16 15 C -0.12 -2.89 7.10 32.08 0.23 -2.66 16 16 C -0.13 -3.46 6.34 31.88 0.20 -3.26 16 17 C 0.12 4.02 3.17 44.51 0.14 4.16 16 18 H 0.08 2.70 7.92 -2.39 -0.02 2.68 16 19 C -0.03 -1.35 2.60 -19.86 -0.05 -1.40 16 20 C -0.09 -3.40 6.91 22.27 0.15 -3.25 16 21 C -0.18 -7.28 8.34 22.35 0.19 -7.10 16 22 C 0.07 2.86 6.70 22.57 0.15 3.01 16 23 O -0.34 -14.08 10.28 -79.69 -0.82 -14.90 16 24 C 0.02 0.73 9.81 113.37 1.11 1.84 16 25 C 0.08 3.57 6.70 22.57 0.15 3.72 16 26 O -0.34 -14.25 10.28 -79.62 -0.82 -15.07 16 27 C 0.03 0.97 9.81 113.37 1.11 2.08 16 28 C -0.15 -5.97 5.06 22.35 0.11 -5.86 16 29 H 0.04 1.36 6.84 -2.39 -0.02 1.35 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 2.49 4.83 -2.39 -0.01 2.48 16 32 H 0.06 3.33 5.90 -2.39 -0.01 3.31 16 33 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.04 1.25 5.58 -2.38 -0.01 1.24 16 36 H 0.08 2.40 6.34 -2.39 -0.02 2.38 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.06 1.73 6.40 -2.39 -0.02 1.71 16 41 H 0.12 4.42 7.88 -2.91 -0.02 4.40 16 42 H 0.13 4.62 6.30 -2.91 -0.02 4.61 16 43 H 0.04 1.17 7.66 -2.39 -0.02 1.15 16 44 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 45 H 0.07 1.82 7.66 -2.39 -0.02 1.80 16 46 H 0.04 1.29 7.66 -2.39 -0.02 1.27 16 47 H 0.07 1.77 7.66 -2.39 -0.02 1.76 16 48 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 49 H 0.12 4.64 5.04 -2.91 -0.01 4.63 16 Total: -1.00 -65.21 358.77 2.58 -62.62 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.95 Total: 26.25 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 5.29 Total: -28.76 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -4.00 Total: -76.31 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -1.64 Total: -29.97 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.98 Total: 46.16 kcal Total: -65.21 2.58 -62.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.362 kcal (2) G-P(sol) polarization free energy of solvation -65.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds