Wall clock time and date at job start Tue Mar 31 2020 12:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47214 * 2 1 4 4 H 1.08995 * 109.47426 * 177.53021 * 3 2 1 5 5 C 1.50697 * 109.46975 * 297.52978 * 3 2 1 6 6 H 1.08005 * 119.99743 * 114.54626 * 5 3 2 7 7 C 1.37874 * 120.00339 * 294.54725 * 5 3 2 8 8 N 1.31514 * 119.99724 * 347.51097 * 7 5 3 9 9 Si 1.86799 * 120.00343 * 167.23664 * 7 5 3 10 10 H 1.48505 * 109.47120 * 89.99940 * 9 7 5 11 11 H 1.48502 * 109.47257 * 209.99696 * 9 7 5 12 12 H 1.48501 * 109.47175 * 330.00263 * 9 7 5 13 13 N 1.46900 * 109.46867 * 57.52888 * 3 2 1 14 14 C 1.46839 * 111.00031 * 54.39553 * 13 3 2 15 15 C 1.53045 * 109.52363 * 185.83615 * 14 13 3 16 16 C 1.53114 * 109.27748 * 300.81989 * 15 14 13 17 17 O 1.42906 * 109.57563 * 177.58748 * 16 15 14 18 18 C 1.35994 * 116.99493 * 83.76791 * 17 16 15 19 19 C 1.38558 * 120.07707 * 358.43860 * 18 17 16 20 20 C 1.38246 * 120.00467 * 180.02562 * 19 18 17 21 21 C 1.38260 * 120.14026 * 359.97438 * 20 19 18 22 22 C 1.38238 * 120.14952 * 0.02562 * 21 20 19 23 23 C 1.38571 * 119.99725 * 359.72448 * 22 21 20 24 24 O 1.35994 * 120.07398 * 180.27523 * 23 22 21 25 25 C 1.42902 * 116.99731 * 0.27199 * 24 23 22 26 26 C 1.53119 * 109.16336 * 57.65496 * 16 15 14 27 27 C 1.46851 * 110.99707 * 178.60583 * 13 3 2 28 28 H 1.09004 * 109.47350 * 305.12089 * 1 2 3 29 29 H 1.09004 * 109.47064 * 65.11584 * 1 2 3 30 30 H 1.08999 * 109.47359 * 185.12094 * 1 2 3 31 31 H 1.08993 * 109.47413 * 240.00079 * 2 1 3 32 32 H 1.08997 * 109.47352 * 119.99542 * 2 1 3 33 33 H 0.97007 * 120.00078 * 0.57326 * 8 7 5 34 34 H 1.09002 * 109.46409 * 305.84982 * 14 13 3 35 35 H 1.08999 * 109.46772 * 65.82204 * 14 13 3 36 36 H 1.08994 * 109.50219 * 180.87553 * 15 14 13 37 37 H 1.08998 * 109.50201 * 60.76176 * 15 14 13 38 38 H 1.08997 * 109.52329 * 297.74728 * 16 15 14 39 39 H 1.08001 * 120.00213 * 359.97438 * 19 18 17 40 40 H 1.07996 * 119.92912 * 179.97438 * 20 19 18 41 41 H 1.07995 * 119.92292 * 179.97438 * 21 20 19 42 42 H 1.07997 * 120.00300 * 179.97438 * 22 21 20 43 43 H 1.09003 * 109.47127 * 180.02562 * 25 24 23 44 44 H 1.08997 * 109.47605 * 300.00262 * 25 24 23 45 45 H 1.09003 * 109.47104 * 60.00710 * 25 24 23 46 46 H 1.09001 * 109.50593 * 182.40569 * 26 16 15 47 47 H 1.09002 * 109.53967 * 62.30046 * 26 16 15 48 48 H 1.09002 * 109.45820 * 294.17308 * 27 13 3 49 49 H 1.08994 * 109.46584 * 54.13882 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4429 0.0443 5 6 1.5883 2.1350 -1.2599 6 1 0.8936 2.9601 -1.2033 7 6 2.0617 1.7153 -2.4849 8 7 3.0813 0.8871 -2.5472 9 14 1.2500 2.3171 -4.0561 10 1 1.9116 3.5677 -4.5074 11 1 1.3816 1.2793 -5.1101 12 1 -0.1884 2.5828 -3.7998 13 7 1.5022 2.1520 1.1685 14 6 1.8106 1.4309 2.4099 15 6 1.1140 2.1177 3.5869 16 6 1.5964 3.5676 3.6836 17 8 0.9084 4.2313 4.7458 18 6 1.4071 4.0692 6.0006 19 6 2.5143 3.2627 6.2090 20 6 3.0196 3.0985 7.4852 21 6 2.4228 3.7383 8.5558 22 6 1.3179 4.5443 8.3549 23 6 0.8096 4.7172 7.0775 24 8 -0.2739 5.5143 6.8772 25 6 -0.8348 6.1479 8.0288 26 6 1.3071 4.2829 2.3610 27 6 1.9980 3.5333 1.2195 28 1 -0.3634 0.5912 0.8406 29 1 -0.3633 0.4324 -0.9323 30 1 -0.3634 -1.0235 0.0917 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.4951 0.5649 -1.7310 34 1 1.4585 0.4024 2.3295 35 1 2.8882 1.4340 2.5736 36 1 1.3557 1.5913 4.5102 37 1 0.0354 2.1027 3.4305 38 1 2.6687 3.5825 3.8788 39 1 2.9821 2.7615 5.3745 40 1 3.8824 2.4693 7.6463 41 1 2.8203 3.6072 9.5514 42 1 0.8534 5.0426 9.1929 43 1 -1.6911 6.7525 7.7299 44 1 -1.1576 5.3882 8.7405 45 1 -0.0837 6.7862 8.4943 46 1 1.6868 5.3035 2.4086 47 1 0.2316 4.3026 2.1849 48 1 3.0748 3.5266 1.3889 49 1 1.7823 4.0319 0.2746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173880.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:21 Heat of formation + Delta-G solvation = -48.616952 kcal Electronic energy + Delta-G solvation = -27701.228291 eV Core-core repulsion = 24014.888904 eV Total energy + Delta-G solvation = -3686.339388 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.73885 -39.23495 -37.89258 -36.87302 -34.54247 -31.84292 -30.91125 -30.52731 -30.19176 -29.47751 -27.38441 -26.04977 -24.12339 -23.35816 -22.62619 -22.15791 -21.75785 -19.82351 -19.16468 -18.65124 -17.38337 -16.78701 -16.53054 -16.01964 -15.47030 -15.05979 -14.90351 -14.67858 -14.36148 -14.25317 -13.89849 -13.68973 -13.49848 -13.19316 -12.92239 -12.67960 -12.33048 -12.22533 -11.95035 -11.87433 -11.56816 -11.45808 -11.36031 -11.28387 -11.08966 -10.80637 -10.79347 -10.71156 -10.43557 -10.14586 -10.09686 -10.03051 -9.78114 -9.65512 -8.87235 -8.52982 -8.28603 -7.88768 -7.28435 -6.34942 -4.02324 1.13176 1.31503 3.11991 3.21085 3.43750 3.48910 3.59343 3.64128 4.50513 4.60959 4.73149 4.74559 4.81402 4.91586 4.92655 4.99248 5.00762 5.18364 5.24772 5.26438 5.31126 5.36573 5.49606 5.57088 5.74597 5.83868 5.91671 5.98557 6.06169 6.10150 6.13797 6.18739 6.32642 6.34080 6.34396 6.42045 6.47885 6.53770 6.61204 6.67585 6.87695 7.03283 7.06636 7.16090 7.34254 7.47140 7.58323 7.89623 8.01814 8.36651 8.61587 8.88454 9.66004 11.01795 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.023808 B = 0.002831 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.785953 B = 9889.588590 C =10342.312113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 C 0.206 3.794 4 H -0.011 1.011 5 C -0.581 4.581 6 H 0.057 0.943 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 1.065 2.935 10 H -0.290 1.290 11 H -0.285 1.285 12 H -0.287 1.287 13 N -0.522 5.522 14 C 0.052 3.948 15 C -0.136 4.136 16 C 0.086 3.914 17 O -0.298 6.298 18 C 0.113 3.887 19 C -0.177 4.177 20 C -0.115 4.115 21 C -0.126 4.126 22 C -0.175 4.175 23 C 0.091 3.909 24 O -0.305 6.305 25 C 0.027 3.973 26 C -0.108 4.108 27 C 0.071 3.929 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.023 0.977 33 H 0.269 0.731 34 H 0.081 0.919 35 H 0.019 0.981 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.137 0.863 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.132 0.868 43 H 0.099 0.901 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.019 0.981 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.898 6.361 21.713 22.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.153 4.153 3 C 0.100 3.900 4 H 0.006 0.994 5 C -0.620 4.620 6 H 0.076 0.924 7 C -0.182 4.182 8 N -0.547 5.547 9 Si 0.894 3.106 10 H -0.217 1.217 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.247 5.247 14 C -0.076 4.076 15 C -0.174 4.174 16 C 0.030 3.970 17 O -0.211 6.211 18 C 0.067 3.933 19 C -0.196 4.196 20 C -0.133 4.133 21 C -0.145 4.145 22 C -0.193 4.193 23 C 0.046 3.954 24 O -0.219 6.219 25 C -0.068 4.068 26 C -0.146 4.146 27 C -0.058 4.058 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.155 0.845 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.149 0.851 43 H 0.117 0.883 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.099 0.901 48 H 0.037 0.963 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.611 6.430 19.734 21.067 hybrid contribution 1.094 -0.115 2.129 2.397 sum -2.518 6.315 21.864 22.896 Atomic orbital electron populations 1.21460 0.96200 0.97751 1.02571 1.21648 0.96495 0.98222 0.98906 1.19354 0.91859 0.90633 0.88148 0.99384 1.21792 1.30089 1.19097 0.90974 0.92448 1.25694 0.95078 0.95735 1.01733 1.70785 1.19437 1.32362 1.32132 0.83609 0.75653 0.75997 0.75384 1.21698 1.21096 1.21285 1.61967 1.59782 1.01239 1.01718 1.22069 0.96510 0.98805 0.90256 1.22142 1.02706 0.94310 0.98269 1.22658 0.95571 0.92777 0.85961 1.86246 1.53357 1.69149 1.12399 1.18325 0.93785 0.96626 0.84551 1.21220 0.97366 1.02066 0.98940 1.20875 1.00296 1.00276 0.91893 1.20800 0.96307 0.98284 0.99065 1.21032 0.99808 1.03655 0.94836 1.18302 0.90084 0.95209 0.91806 1.86210 1.41954 1.59494 1.34203 1.23039 0.98581 0.96898 0.88267 1.21697 1.03201 0.98362 0.91323 1.21893 0.95114 0.90569 0.98200 0.92863 0.92239 0.96219 0.91933 0.95886 0.92028 0.90121 0.96311 0.91949 0.90119 0.91651 0.84496 0.85711 0.85834 0.85064 0.88280 0.92892 0.92908 0.91463 0.90128 0.96315 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 9.35 37.15 0.35 -2.23 16 2 C -0.11 -2.59 4.88 -26.73 -0.13 -2.72 16 3 C 0.21 4.94 1.39 -68.86 -0.10 4.84 16 4 H -0.01 -0.30 7.35 -51.93 -0.38 -0.68 16 5 C -0.58 -15.37 6.58 -34.44 -0.23 -15.59 16 6 H 0.06 1.55 7.07 -52.48 -0.37 1.18 16 7 C 0.02 0.60 5.13 -17.82 -0.09 0.51 16 8 N -0.91 -26.51 13.00 55.43 0.72 -25.79 16 9 Si 1.06 24.74 29.92 -169.99 -5.09 19.65 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.52 -10.68 3.61 -228.08 -0.82 -11.50 16 14 C 0.05 0.92 4.85 -3.83 -0.02 0.90 16 15 C -0.14 -2.09 5.39 -26.65 -0.14 -2.23 16 16 C 0.09 1.31 2.18 -26.61 -0.06 1.25 16 17 O -0.30 -4.75 9.60 -34.23 -0.33 -5.08 16 18 C 0.11 1.62 6.60 -39.12 -0.26 1.37 16 19 C -0.18 -2.21 8.27 -39.46 -0.33 -2.53 16 20 C -0.12 -1.20 10.04 -39.57 -0.40 -1.60 16 21 C -0.13 -1.21 10.04 -39.57 -0.40 -1.61 16 22 C -0.17 -1.80 9.04 -39.46 -0.36 -2.16 16 23 C 0.09 1.20 6.70 -39.12 -0.26 0.94 16 24 O -0.31 -3.99 10.28 -34.23 -0.35 -4.34 16 25 C 0.03 0.22 9.81 101.05 0.99 1.21 16 26 C -0.11 -1.75 5.75 -26.65 -0.15 -1.90 16 27 C 0.07 1.35 5.27 -3.83 -0.02 1.33 16 28 H 0.05 1.09 7.06 -51.93 -0.37 0.72 16 29 H 0.06 1.36 7.47 -51.93 -0.39 0.97 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 1.57 6.65 -51.93 -0.35 1.22 16 32 H 0.02 0.47 6.35 -51.93 -0.33 0.14 16 33 H 0.27 7.82 6.33 -40.82 -0.26 7.56 16 34 H 0.08 1.43 5.71 -51.93 -0.30 1.13 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.86 7.04 -51.93 -0.37 0.49 16 37 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.07 0.95 6.20 -51.93 -0.32 0.63 16 39 H 0.14 1.64 5.49 -52.49 -0.29 1.35 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.13 1.00 6.30 -52.49 -0.33 0.67 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.34 7.65 -51.93 -0.40 -0.05 16 45 H 0.05 0.34 7.68 -51.93 -0.40 -0.06 16 46 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.10 2.01 6.50 -51.93 -0.34 1.67 16 LS Contribution 372.97 15.07 5.62 5.62 Total: -1.00 -30.11 372.97 -9.62 -39.73 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.78 Total: 1.94 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -1.60 Total: -20.23 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.10 Total: -37.29 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.68 Total: -9.42 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.09 Total: 19.65 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.11 -9.62 -39.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173880.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.885 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds