Wall clock time and date at job start Tue Mar 31 2020 12:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47214 * 2 1 4 4 H 1.08995 * 109.47426 * 177.53021 * 3 2 1 5 5 C 1.50697 * 109.46975 * 297.52978 * 3 2 1 6 6 H 1.08005 * 119.99743 * 114.54626 * 5 3 2 7 7 C 1.37874 * 120.00339 * 294.54725 * 5 3 2 8 8 N 1.31514 * 119.99724 * 347.51097 * 7 5 3 9 9 Si 1.86799 * 120.00343 * 167.23664 * 7 5 3 10 10 H 1.48505 * 109.47120 * 89.99940 * 9 7 5 11 11 H 1.48502 * 109.47257 * 209.99696 * 9 7 5 12 12 H 1.48501 * 109.47175 * 330.00263 * 9 7 5 13 13 N 1.46900 * 109.46867 * 57.52888 * 3 2 1 14 14 C 1.46839 * 111.00031 * 54.39553 * 13 3 2 15 15 C 1.53045 * 109.52363 * 185.83615 * 14 13 3 16 16 C 1.53114 * 109.27748 * 300.81989 * 15 14 13 17 17 O 1.42906 * 109.57563 * 177.58748 * 16 15 14 18 18 C 1.35994 * 116.99493 * 83.76791 * 17 16 15 19 19 C 1.38558 * 120.07707 * 358.43860 * 18 17 16 20 20 C 1.38246 * 120.00467 * 180.02562 * 19 18 17 21 21 C 1.38260 * 120.14026 * 359.97438 * 20 19 18 22 22 C 1.38238 * 120.14952 * 0.02562 * 21 20 19 23 23 C 1.38571 * 119.99725 * 359.72448 * 22 21 20 24 24 O 1.35994 * 120.07398 * 180.27523 * 23 22 21 25 25 C 1.42902 * 116.99731 * 0.27199 * 24 23 22 26 26 C 1.53119 * 109.16336 * 57.65496 * 16 15 14 27 27 C 1.46851 * 110.99707 * 178.60583 * 13 3 2 28 28 H 1.09004 * 109.47350 * 305.12089 * 1 2 3 29 29 H 1.09004 * 109.47064 * 65.11584 * 1 2 3 30 30 H 1.08999 * 109.47359 * 185.12094 * 1 2 3 31 31 H 1.08993 * 109.47413 * 240.00079 * 2 1 3 32 32 H 1.08997 * 109.47352 * 119.99542 * 2 1 3 33 33 H 0.97007 * 120.00078 * 0.57326 * 8 7 5 34 34 H 1.09002 * 109.46409 * 305.84982 * 14 13 3 35 35 H 1.08999 * 109.46772 * 65.82204 * 14 13 3 36 36 H 1.08994 * 109.50219 * 180.87553 * 15 14 13 37 37 H 1.08998 * 109.50201 * 60.76176 * 15 14 13 38 38 H 1.08997 * 109.52329 * 297.74728 * 16 15 14 39 39 H 1.08001 * 120.00213 * 359.97438 * 19 18 17 40 40 H 1.07996 * 119.92912 * 179.97438 * 20 19 18 41 41 H 1.07995 * 119.92292 * 179.97438 * 21 20 19 42 42 H 1.07997 * 120.00300 * 179.97438 * 22 21 20 43 43 H 1.09003 * 109.47127 * 180.02562 * 25 24 23 44 44 H 1.08997 * 109.47605 * 300.00262 * 25 24 23 45 45 H 1.09003 * 109.47104 * 60.00710 * 25 24 23 46 46 H 1.09001 * 109.50593 * 182.40569 * 26 16 15 47 47 H 1.09002 * 109.53967 * 62.30046 * 26 16 15 48 48 H 1.09002 * 109.45820 * 294.17308 * 27 13 3 49 49 H 1.08994 * 109.46584 * 54.13882 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4429 0.0443 5 6 1.5883 2.1350 -1.2599 6 1 0.8936 2.9601 -1.2033 7 6 2.0617 1.7153 -2.4849 8 7 3.0813 0.8871 -2.5472 9 14 1.2500 2.3171 -4.0561 10 1 1.9116 3.5677 -4.5074 11 1 1.3816 1.2793 -5.1101 12 1 -0.1884 2.5828 -3.7998 13 7 1.5022 2.1520 1.1685 14 6 1.8106 1.4309 2.4099 15 6 1.1140 2.1177 3.5869 16 6 1.5964 3.5676 3.6836 17 8 0.9084 4.2313 4.7458 18 6 1.4071 4.0692 6.0006 19 6 2.5143 3.2627 6.2090 20 6 3.0196 3.0985 7.4852 21 6 2.4228 3.7383 8.5558 22 6 1.3179 4.5443 8.3549 23 6 0.8096 4.7172 7.0775 24 8 -0.2739 5.5143 6.8772 25 6 -0.8348 6.1479 8.0288 26 6 1.3071 4.2829 2.3610 27 6 1.9980 3.5333 1.2195 28 1 -0.3634 0.5912 0.8406 29 1 -0.3633 0.4324 -0.9323 30 1 -0.3634 -1.0235 0.0917 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.4951 0.5649 -1.7310 34 1 1.4585 0.4024 2.3295 35 1 2.8882 1.4340 2.5736 36 1 1.3557 1.5913 4.5102 37 1 0.0354 2.1027 3.4305 38 1 2.6687 3.5825 3.8788 39 1 2.9821 2.7615 5.3745 40 1 3.8824 2.4693 7.6463 41 1 2.8203 3.6072 9.5514 42 1 0.8534 5.0426 9.1929 43 1 -1.6911 6.7525 7.7299 44 1 -1.1576 5.3882 8.7405 45 1 -0.0837 6.7862 8.4943 46 1 1.6868 5.3035 2.4086 47 1 0.2316 4.3026 2.1849 48 1 3.0748 3.5266 1.3889 49 1 1.7823 4.0319 0.2746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173880.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:20 Heat of formation + Delta-G solvation = -64.945148 kcal Electronic energy + Delta-G solvation = -27701.936335 eV Core-core repulsion = 24014.888904 eV Total energy + Delta-G solvation = -3687.047432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.70997 -40.43598 -39.17908 -37.83221 -36.22222 -33.70399 -32.33993 -31.74782 -31.22644 -30.55548 -28.05503 -27.87789 -25.86227 -24.76977 -24.01686 -23.14968 -22.89945 -21.40259 -20.70666 -19.62183 -18.71884 -18.32159 -17.56341 -16.99002 -16.76793 -16.05514 -15.95717 -15.75268 -15.70150 -15.62305 -15.53424 -15.37397 -14.96740 -14.26413 -14.16445 -14.06466 -13.67710 -13.53698 -13.20480 -13.04328 -13.00136 -12.78241 -12.69037 -12.63507 -12.30601 -12.22938 -12.06782 -12.00047 -11.93927 -11.92154 -11.69332 -11.53972 -11.48958 -11.22340 -10.51987 -10.34208 -9.71190 -9.02626 -8.80212 -8.53482 -6.20890 0.29678 0.46289 1.54625 1.62508 1.80364 2.14089 2.39013 2.58421 2.75643 3.14952 3.25186 3.63787 3.69677 3.83987 3.97280 4.01011 4.05465 4.16767 4.29289 4.30517 4.37678 4.41063 4.43339 4.45487 4.49642 4.50854 4.53642 4.65699 4.69278 4.73608 4.77980 4.79974 4.88827 5.00926 5.07141 5.10736 5.15484 5.21924 5.28163 5.34645 5.35467 5.49538 5.53573 5.69570 5.76226 6.00078 6.11638 6.14951 6.46830 6.56798 6.64479 6.78793 7.54508 8.82928 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.023808 B = 0.002831 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.785953 B = 9889.588590 C =10342.312113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.109 4.109 3 C 0.211 3.789 4 H -0.046 1.046 5 C -0.580 4.580 6 H 0.048 0.952 7 C -0.025 4.025 8 N -0.937 5.937 9 Si 1.106 2.894 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.527 5.527 14 C 0.054 3.946 15 C -0.123 4.123 16 C 0.094 3.906 17 O -0.316 6.316 18 C 0.075 3.925 19 C -0.184 4.184 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.172 4.172 23 C 0.074 3.926 24 O -0.337 6.337 25 C 0.019 3.981 26 C -0.098 4.098 27 C 0.074 3.926 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.257 0.743 34 H 0.082 0.918 35 H 0.020 0.980 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.136 0.864 40 H 0.149 0.851 41 H 0.157 0.843 42 H 0.160 0.840 43 H 0.111 0.889 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.014 0.986 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 6.693 24.544 25.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.147 4.147 3 C 0.103 3.897 4 H -0.029 1.029 5 C -0.618 4.618 6 H 0.066 0.934 7 C -0.223 4.223 8 N -0.574 5.574 9 Si 0.930 3.070 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.251 5.251 14 C -0.074 4.074 15 C -0.161 4.161 16 C 0.038 3.962 17 O -0.230 6.230 18 C 0.030 3.970 19 C -0.203 4.203 20 C -0.138 4.138 21 C -0.136 4.136 22 C -0.190 4.190 23 C 0.029 3.971 24 O -0.252 6.252 25 C -0.076 4.076 26 C -0.136 4.136 27 C -0.054 4.054 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.039 0.961 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.153 0.847 40 H 0.166 0.834 41 H 0.175 0.825 42 H 0.177 0.823 43 H 0.130 0.870 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.090 0.910 48 H 0.033 0.967 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.166 6.778 22.606 23.965 hybrid contribution 1.281 -0.171 1.437 1.933 sum -2.886 6.607 24.043 25.101 Atomic orbital electron populations 1.21345 0.94696 0.99351 1.01507 1.21534 0.97667 0.97018 0.98497 1.19176 0.89794 0.91780 0.88914 1.02904 1.22008 1.29037 1.18565 0.92186 0.93356 1.26914 0.94949 0.95516 1.04935 1.70896 1.20918 1.34152 1.31459 0.83061 0.75681 0.75927 0.72339 1.20439 1.21215 1.19790 1.61922 1.59533 1.01761 1.01931 1.22107 0.96937 0.98789 0.89584 1.22011 1.01658 0.94562 0.97887 1.22450 0.95963 0.92270 0.85553 1.86188 1.53931 1.69663 1.13256 1.18693 0.95422 0.98785 0.84086 1.21326 0.97048 1.01946 0.99987 1.21225 1.00881 1.00406 0.91266 1.21254 0.95371 0.96654 1.00351 1.21403 0.99761 1.03348 0.94505 1.18612 0.90484 0.95521 0.92531 1.86158 1.42217 1.59891 1.36886 1.23329 0.99298 0.97466 0.87463 1.21534 1.02188 0.98793 0.91063 1.21809 0.95171 0.90057 0.98380 0.92279 0.94525 0.93557 0.94798 0.93756 0.93332 0.89977 0.96144 0.89968 0.91088 0.90949 0.84668 0.83370 0.82518 0.82301 0.87034 0.91452 0.91428 0.90096 0.90997 0.96744 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.64 9.35 71.98 0.67 -3.96 16 2 C -0.11 -4.97 4.88 30.59 0.15 -4.82 16 3 C 0.21 10.37 1.39 44.17 0.06 10.43 16 4 H -0.05 -2.58 7.35 -2.39 -0.02 -2.59 16 5 C -0.58 -31.49 6.58 25.60 0.17 -31.32 16 6 H 0.05 2.67 7.07 -2.91 -0.02 2.65 16 7 C -0.02 -1.37 5.13 84.65 0.43 -0.94 16 8 N -0.94 -56.13 13.00 21.45 0.28 -55.86 16 9 Si 1.11 50.38 29.92 68.60 2.05 52.43 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 13 N -0.53 -21.85 3.61 -875.50 -3.16 -25.01 16 14 C 0.05 1.87 4.85 86.33 0.42 2.29 16 15 C -0.12 -3.67 5.39 30.65 0.17 -3.51 16 16 C 0.09 2.81 2.18 30.67 0.07 2.88 16 17 O -0.32 -10.02 9.60 -79.62 -0.76 -10.79 16 18 C 0.08 2.10 6.60 22.57 0.15 2.25 16 19 C -0.18 -4.32 8.27 22.35 0.18 -4.13 16 20 C -0.12 -2.16 10.04 22.28 0.22 -1.93 16 21 C -0.12 -1.84 10.04 22.28 0.22 -1.61 16 22 C -0.17 -3.03 9.04 22.35 0.20 -2.83 16 23 C 0.07 1.84 6.70 22.57 0.15 1.99 16 24 O -0.34 -8.51 10.28 -79.62 -0.82 -9.33 16 25 C 0.02 0.26 9.81 113.37 1.11 1.37 16 26 C -0.10 -3.19 5.75 30.65 0.18 -3.02 16 27 C 0.07 2.90 5.27 86.33 0.45 3.36 16 28 H 0.06 2.36 7.06 -2.39 -0.02 2.34 16 29 H 0.04 1.66 7.47 -2.38 -0.02 1.64 16 30 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.03 1.73 6.65 -2.39 -0.02 1.72 16 32 H 0.04 1.81 6.35 -2.39 -0.02 1.79 16 33 H 0.26 15.60 6.33 -92.70 -0.59 15.01 16 34 H 0.08 2.81 5.71 -2.39 -0.01 2.80 16 35 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 2.14 7.04 -2.39 -0.02 2.12 16 37 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 38 H 0.07 2.06 6.20 -2.39 -0.01 2.05 16 39 H 0.14 3.08 5.49 -2.91 -0.02 3.06 16 40 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 41 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 42 H 0.16 1.80 6.30 -2.91 -0.02 1.78 16 43 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 0.71 7.65 -2.39 -0.02 0.69 16 45 H 0.07 0.70 7.68 -2.39 -0.02 0.68 16 46 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 48 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.07 3.14 6.50 -2.39 -0.02 3.13 16 Total: -1.00 -67.24 372.97 3.72 -63.52 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 1.12 Total: 18.55 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 5.01 Total: -33.52 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -2.88 Total: -80.87 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -1.58 Total: -20.11 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.05 Total: 52.43 kcal Total: -67.24 3.72 -63.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173880.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.425 kcal (2) G-P(sol) polarization free energy of solvation -67.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds