Wall clock time and date at job start Tue Mar 31 2020 12:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46967 * 2 1 4 4 H 1.09005 * 109.47385 * 54.47523 * 3 2 1 5 5 C 1.50698 * 109.47072 * 174.47467 * 3 2 1 6 6 H 1.07998 * 120.00163 * 2.55803 * 5 3 2 7 7 C 1.37879 * 120.00133 * 182.55588 * 5 3 2 8 8 N 1.31517 * 120.00097 * 5.50472 * 7 5 3 9 9 Si 1.86800 * 120.00071 * 185.51044 * 7 5 3 10 10 H 1.48504 * 109.47417 * 64.99146 * 9 7 5 11 11 H 1.48497 * 109.47175 * 184.98805 * 9 7 5 12 12 H 1.48495 * 109.47130 * 304.99148 * 9 7 5 13 13 N 1.46901 * 109.47317 * 294.47768 * 3 2 1 14 14 C 1.46900 * 111.00105 * 85.55351 * 13 3 2 15 15 C 1.50697 * 109.47102 * 79.90608 * 14 13 3 16 16 C 1.38236 * 120.00006 * 84.22505 * 15 14 13 17 17 C 1.38238 * 120.00060 * 179.97438 * 16 15 14 18 18 C 1.38231 * 119.99884 * 0.09300 * 17 16 15 19 19 C 1.38236 * 119.99951 * 359.86263 * 18 17 16 20 20 C 1.38230 * 120.00284 * 0.08874 * 19 18 17 21 21 C 1.46901 * 110.99820 * 321.59881 * 13 3 2 22 22 H 1.09005 * 109.46862 * 323.77557 * 21 13 3 23 23 C 1.52995 * 109.47155 * 83.77848 * 21 13 3 24 24 C 1.52997 * 109.47025 * 203.77741 * 21 13 3 25 25 C 1.50707 * 109.47299 * 65.93631 * 24 21 13 26 26 O 1.20833 * 119.99680 * 6.32477 * 25 24 21 27 27 O 1.34222 * 120.00170 * 186.32871 * 25 24 21 28 28 C 1.45201 * 117.00001 * 174.81516 * 27 25 24 29 29 H 1.09000 * 109.47324 * 77.15485 * 1 2 3 30 30 H 1.09004 * 109.47274 * 197.15897 * 1 2 3 31 31 H 1.08998 * 109.47456 * 317.15690 * 1 2 3 32 32 H 1.09000 * 109.47026 * 240.00167 * 2 1 3 33 33 H 1.08998 * 109.46824 * 119.99819 * 2 1 3 34 34 H 0.96996 * 120.00059 * 184.99866 * 8 7 5 35 35 H 1.09002 * 109.46719 * 319.90572 * 14 13 3 36 36 H 1.09000 * 109.46925 * 199.90348 * 14 13 3 37 37 H 1.07997 * 119.99988 * 359.69945 * 16 15 14 38 38 H 1.07998 * 119.99938 * 179.97438 * 17 16 15 39 39 H 1.08000 * 120.00280 * 179.97438 * 18 17 16 40 40 H 1.08007 * 119.99891 * 180.02562 * 19 18 17 41 41 H 1.07997 * 120.00596 * 179.97438 * 20 19 18 42 42 H 1.09005 * 109.47101 * 40.77767 * 23 21 13 43 43 H 1.09004 * 109.47114 * 160.77999 * 23 21 13 44 44 H 1.08999 * 109.47275 * 280.77894 * 23 21 13 45 45 H 1.09002 * 109.46926 * 185.93034 * 24 21 13 46 46 H 1.08997 * 109.47801 * 305.93297 * 24 21 13 47 47 H 1.09007 * 109.46580 * 299.99440 * 28 27 25 48 48 H 1.09000 * 109.47448 * 59.99196 * 28 27 25 49 49 H 1.08999 * 109.47080 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5981 1.9841 0.8364 5 6 3.5407 1.4447 0.1368 6 1 4.0809 0.5103 0.1743 7 6 4.2242 2.6397 0.2141 8 7 3.5610 3.7736 0.2776 9 14 6.0921 2.6481 0.2284 10 1 6.5995 2.1361 -1.0699 11 1 6.5793 4.0351 0.4379 12 1 6.5826 1.7797 1.3287 13 7 1.6621 2.0954 -1.2605 14 6 0.3062 2.6546 -1.1780 15 6 0.3497 3.9720 -0.4475 16 6 0.6599 5.1321 -1.1322 17 6 0.6993 6.3406 -0.4622 18 6 0.4304 6.3887 0.8929 19 6 0.1193 5.2287 1.5774 20 6 0.0789 4.0204 0.9072 21 6 1.7800 1.1651 -2.3913 22 1 2.6392 0.5124 -2.2366 23 6 0.5087 0.3199 -2.4910 24 6 1.9683 1.9578 -3.6863 25 6 3.2924 2.6765 -3.6474 26 8 4.0615 2.4771 -2.7371 27 8 3.6173 3.5380 -4.6240 28 6 4.8549 4.2803 -4.4634 29 1 -0.3634 0.2285 -1.0019 30 1 -0.3634 -0.9819 0.3032 31 1 -0.3634 0.7535 0.6988 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.0396 4.6171 0.2588 35 1 -0.3403 1.9617 -0.6395 36 1 -0.0847 2.8096 -2.1836 37 1 0.8758 5.0937 -2.1897 38 1 0.9421 7.2469 -0.9971 39 1 0.4616 7.3328 1.4165 40 1 -0.0912 5.2664 2.6361 41 1 -0.1637 3.1140 1.4420 42 1 -0.3615 0.9490 -2.3034 43 1 0.4367 -0.1117 -3.4893 44 1 0.5451 -0.4798 -1.7512 45 1 1.9503 1.2752 -4.5359 46 1 1.1630 2.6852 -3.7875 47 1 4.8056 4.8759 -3.5518 48 1 5.6905 3.5836 -4.3975 49 1 4.9972 4.9391 -5.3201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176472.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:39 Heat of formation + Delta-G solvation = 8.741923 kcal Electronic energy + Delta-G solvation = -30094.883297 eV Core-core repulsion = 26411.031177 eV Total energy + Delta-G solvation = -3683.852120 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.90233 -39.00358 -37.76616 -35.50374 -32.93356 -32.03928 -31.75429 -30.00715 -29.52630 -28.49271 -26.99482 -26.01490 -24.33072 -22.50821 -21.84263 -21.37466 -20.28329 -19.93777 -18.15790 -16.78701 -16.38507 -16.07087 -15.91982 -15.66595 -15.06825 -14.97113 -14.35499 -14.12647 -13.95841 -13.31016 -13.11742 -12.84104 -12.74601 -12.57097 -12.10257 -11.99351 -11.80132 -11.68515 -11.53918 -11.49882 -11.47589 -11.22919 -11.01003 -10.67833 -10.58004 -10.41026 -10.24753 -10.12073 -10.02100 -9.99752 -9.65575 -9.54411 -9.28093 -9.14314 -8.79062 -7.99555 -7.94292 -7.72992 -6.64906 -5.56599 -3.62646 2.30603 2.33728 3.23733 3.50964 3.56307 3.57308 3.67138 4.62134 4.80858 5.17992 5.40950 5.45762 5.58659 5.60762 5.65527 5.68731 5.74604 5.77337 5.82572 5.85420 5.89344 5.89946 5.94760 6.01412 6.02845 6.08089 6.11832 6.16976 6.29162 6.38065 6.42091 6.46214 6.50810 6.68837 6.80692 6.86903 6.90449 6.91364 7.02861 7.13766 7.25583 7.32002 7.32896 7.59825 7.60962 7.92916 8.17881 8.46153 8.66331 8.80689 8.87187 9.36842 10.04870 11.47895 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009045 B = 0.007305 C = 0.006800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3094.727726 B = 3832.108544 C = 4116.694412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C 0.224 3.776 4 H 0.045 0.955 5 C -0.515 4.515 6 H 0.041 0.959 7 C 0.118 3.882 8 N -0.836 5.836 9 Si 0.866 3.134 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.289 1.289 13 N -0.474 5.474 14 C 0.067 3.933 15 C -0.023 4.023 16 C -0.086 4.086 17 C -0.124 4.124 18 C -0.132 4.132 19 C -0.120 4.120 20 C -0.094 4.094 21 C 0.094 3.906 22 H 0.095 0.905 23 C -0.220 4.220 24 C -0.094 4.094 25 C 0.440 3.560 26 O -0.429 6.429 27 O -0.383 6.383 28 C 0.042 3.958 29 H 0.097 0.903 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.248 0.752 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.066 0.934 43 H 0.041 0.959 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.879 0.280 -6.943 10.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.195 4.195 3 C 0.119 3.881 4 H 0.062 0.938 5 C -0.553 4.553 6 H 0.059 0.941 7 C -0.089 4.089 8 N -0.471 5.471 9 Si 0.695 3.305 10 H -0.204 1.204 11 H -0.224 1.224 12 H -0.216 1.216 13 N -0.197 5.197 14 C -0.061 4.061 15 C -0.024 4.024 16 C -0.105 4.105 17 C -0.142 4.142 18 C -0.151 4.151 19 C -0.138 4.138 20 C -0.113 4.113 21 C -0.015 4.015 22 H 0.113 0.887 23 C -0.277 4.277 24 C -0.132 4.132 25 C 0.278 3.722 26 O -0.309 6.309 27 O -0.302 6.302 28 C -0.052 4.052 29 H 0.115 0.885 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.084 0.916 43 H 0.060 0.940 44 H 0.116 0.884 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.248 0.804 -6.625 9.852 hybrid contribution 1.080 -0.348 0.126 1.142 sum -6.168 0.456 -6.499 8.971 Atomic orbital electron populations 1.23239 0.98650 0.99824 1.04301 1.22559 0.93289 1.02748 1.00897 1.19353 0.95748 0.85688 0.87295 0.93767 1.20573 0.90672 0.91695 1.52395 0.94077 1.24522 0.95512 0.95804 0.93038 1.69985 1.33854 0.96423 1.46864 0.87143 0.89587 0.75946 0.77815 1.20407 1.22414 1.21594 1.62931 1.18709 1.33727 1.04291 1.21487 0.93693 0.93296 0.97587 1.19515 0.95114 0.94346 0.93379 1.20622 0.98634 0.92225 0.98996 1.20821 1.01474 0.97295 0.94618 1.20766 1.02316 0.97434 0.94560 1.20810 1.01400 0.93124 0.98514 1.20737 0.99939 0.96562 0.94018 1.21399 0.97176 0.92839 0.90127 0.88707 1.23850 0.99626 1.02225 1.02005 1.21453 0.92458 0.99159 1.00162 1.23596 0.89943 0.78768 0.79877 1.90891 1.49443 1.59536 1.31032 1.86436 1.41834 1.53395 1.48532 1.22998 0.84713 0.95209 1.02264 0.88501 0.94840 0.93503 0.92206 0.93276 0.94210 0.93666 0.92800 0.87939 0.87911 0.87919 0.87784 0.87714 0.91597 0.93953 0.88411 0.89596 0.89419 0.92188 0.92788 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.28 7.14 37.16 0.27 -3.01 16 2 C -0.16 -3.03 4.70 -26.73 -0.13 -3.15 16 3 C 0.22 5.08 1.54 -68.87 -0.11 4.98 16 4 H 0.04 1.12 5.97 -51.93 -0.31 0.81 16 5 C -0.52 -13.73 7.75 -34.44 -0.27 -14.00 16 6 H 0.04 1.14 7.75 -52.49 -0.41 0.73 16 7 C 0.12 3.24 4.16 -17.82 -0.07 3.17 16 8 N -0.84 -23.05 13.02 55.43 0.72 -22.33 16 9 Si 0.87 22.60 29.43 -169.99 -5.00 17.60 16 10 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 11 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 12 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 13 N -0.47 -9.57 3.11 -221.53 -0.69 -10.26 16 14 C 0.07 1.20 3.35 -4.98 -0.02 1.19 16 15 C -0.02 -0.44 5.18 -104.62 -0.54 -0.99 16 16 C -0.09 -1.65 9.73 -39.58 -0.38 -2.04 16 17 C -0.12 -2.24 10.05 -39.58 -0.40 -2.64 16 18 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 19 C -0.12 -2.20 10.05 -39.59 -0.40 -2.60 16 20 C -0.09 -1.82 8.59 -39.58 -0.34 -2.16 16 21 C 0.09 1.67 1.24 -67.72 -0.08 1.59 16 22 H 0.09 1.96 6.19 -51.93 -0.32 1.64 16 23 C -0.22 -3.12 6.88 37.15 0.26 -2.87 16 24 C -0.09 -1.51 5.31 -27.88 -0.15 -1.66 16 25 C 0.44 8.59 7.77 36.01 0.28 8.87 16 26 O -0.43 -10.17 13.41 -18.76 -0.25 -10.42 16 27 O -0.38 -6.77 10.56 -39.24 -0.41 -7.18 16 28 C 0.04 0.67 10.58 101.05 1.07 1.74 16 29 H 0.10 1.42 2.47 -65.69 -0.16 1.26 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.78 7.06 -51.93 -0.37 0.41 16 32 H 0.06 1.14 4.75 -51.93 -0.25 0.89 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.25 7.01 8.32 -40.82 -0.34 6.67 16 35 H 0.05 0.78 3.80 -51.93 -0.20 0.58 16 36 H 0.05 0.88 5.96 -51.93 -0.31 0.57 16 37 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 38 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 40 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 41 H 0.10 1.97 7.64 -52.49 -0.40 1.57 16 42 H 0.07 0.90 4.53 -51.93 -0.24 0.67 16 43 H 0.04 0.51 7.91 -51.93 -0.41 0.10 16 44 H 0.10 1.43 3.46 -51.93 -0.18 1.25 16 45 H 0.09 1.14 8.02 -51.93 -0.42 0.72 16 46 H 0.09 1.33 6.96 -51.93 -0.36 0.97 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.05 0.86 8.09 -51.93 -0.42 0.44 16 49 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 368.59 15.07 5.55 5.55 Total: -1.00 -29.99 368.59 -8.75 -38.75 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.26 Total: 4.60 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -1.41 Total: -16.31 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.03 Total: -32.59 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.67 Total: -17.60 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.00 Total: 17.60 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.99 -8.75 -38.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176472.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.490 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds