Wall clock time and date at job start Tue Mar 31 2020 12:08:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 O 1.45196 * 109.46980 * 2 1
4 4 C 1.34233 * 116.99968 * 179.97438 * 3 2 1
5 5 O 1.20820 * 119.99781 * 0.02562 * 4 3 2
6 6 C 1.50700 * 120.00067 * 180.02562 * 4 3 2
7 7 N 1.46898 * 109.47328 * 184.12133 * 6 4 3
8 8 C 1.46896 * 111.00156 * 169.46568 * 7 6 4
9 9 H 1.08999 * 109.47116 * 71.41020 * 8 7 6
10 10 C 1.53001 * 109.47484 * 311.40749 * 8 7 6
11 11 C 1.50708 * 109.47193 * 191.40530 * 8 7 6
12 12 C 1.38235 * 119.99742 * 49.51869 * 11 8 7
13 13 C 1.38233 * 119.99916 * 179.78483 * 12 11 8
14 14 C 1.38243 * 119.99903 * 0.44937 * 13 12 11
15 15 C 1.38235 * 119.99854 * 359.80790 * 14 13 12
16 16 C 1.38236 * 119.99771 * 229.79692 * 11 8 7
17 17 C 1.46902 * 110.99989 * 293.42484 * 7 6 4
18 18 H 1.09000 * 109.46976 * 34.88652 * 17 7 6
19 19 C 1.50702 * 109.47183 * 154.89079 * 17 7 6
20 20 H 1.07998 * 119.99971 * 116.87091 * 19 17 7
21 21 C 1.37871 * 119.99768 * 296.86708 * 19 17 7
22 22 N 1.31515 * 120.00562 * 22.93037 * 21 19 17
23 23 Si 1.86809 * 119.99866 * 202.93245 * 21 19 17
24 24 H 1.48501 * 109.46883 * 354.97502 * 23 21 19
25 25 H 1.48492 * 109.47317 * 114.97813 * 23 21 19
26 26 H 1.48500 * 109.47006 * 234.97868 * 23 21 19
27 27 C 1.52994 * 109.47013 * 274.89080 * 17 7 6
28 28 C 1.53005 * 109.47281 * 65.12066 * 27 17 7
29 29 H 1.09003 * 109.46958 * 299.99677 * 1 2 3
30 30 H 1.09001 * 109.47522 * 59.99518 * 1 2 3
31 31 H 1.09003 * 109.46994 * 180.02562 * 1 2 3
32 32 H 1.09003 * 109.46958 * 240.00323 * 2 1 3
33 33 H 1.08998 * 109.47078 * 120.00244 * 2 1 3
34 34 H 1.08996 * 109.47350 * 64.11940 * 6 4 3
35 35 H 1.09003 * 109.47157 * 304.11911 * 6 4 3
36 36 H 1.09004 * 109.46822 * 299.99899 * 10 8 7
37 37 H 1.08998 * 109.46521 * 59.99863 * 10 8 7
38 38 H 1.08994 * 109.47057 * 179.97438 * 10 8 7
39 39 H 1.08000 * 120.00060 * 0.02562 * 12 11 8
40 40 H 1.08002 * 120.00247 * 180.27657 * 13 12 11
41 41 H 1.07991 * 120.00246 * 179.83093 * 14 13 12
42 42 H 1.08001 * 120.00072 * 180.02562 * 15 14 13
43 43 H 1.07996 * 120.00459 * 359.97438 * 16 11 8
44 44 H 0.97002 * 119.99672 * 6.52172 * 22 21 19
45 45 H 1.09000 * 109.47288 * 185.12462 * 27 17 7
46 46 H 1.09001 * 109.47061 * 305.12712 * 27 17 7
47 47 H 1.09002 * 109.46733 * 41.44064 * 28 27 17
48 48 H 1.09003 * 109.47375 * 161.43790 * 28 27 17
49 49 H 1.08999 * 109.47512 * 281.44250 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3689 0.0000
4 6 3.3447 1.5448 0.0005
5 8 4.0807 0.5867 0.0005
6 6 3.9207 2.9374 0.0012
7 7 5.3844 2.8620 -0.0979
8 6 5.9640 4.1879 -0.3507
9 1 5.8800 4.7986 0.5482
10 6 5.2107 4.8635 -1.4984
11 6 7.4168 4.0385 -0.7225
12 6 7.7912 3.1325 -1.6971
13 6 9.1233 2.9986 -2.0412
14 6 10.0820 3.7642 -1.4043
15 6 9.7082 4.6664 -0.4260
16 6 8.3756 4.8035 -0.0849
17 6 5.9631 2.2558 1.1086
18 1 5.2900 1.4867 1.4874
19 6 7.2944 1.6359 0.7702
20 1 8.1970 2.0105 1.2299
21 6 7.3600 0.5905 -0.1263
22 7 6.4001 0.4197 -1.0089
23 14 8.8126 -0.5835 -0.0874
24 1 9.8070 -0.1077 0.9076
25 1 8.3427 -1.9401 0.2921
26 1 9.4429 -0.6358 -1.4310
27 6 6.1591 3.3332 2.1769
28 6 4.7955 3.8734 2.6128
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5139 -0.8899
31 1 -0.3633 -1.0277 0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5139 0.8899
34 1 3.6448 3.4444 0.9258
35 1 3.5272 3.4938 -0.8496
36 1 5.2948 4.2527 -2.3974
37 1 4.1600 4.9715 -1.2294
38 1 5.6405 5.8474 -1.6856
39 1 7.0425 2.5319 -2.1923
40 1 9.4153 2.2939 -2.8058
41 1 11.1230 3.6577 -1.6712
42 1 10.4572 5.2648 0.0714
43 1 8.0835 5.5084 0.6794
44 1 5.6951 1.0807 -1.0927
45 1 6.6714 2.9028 3.0374
46 1 6.7579 4.1466 1.7671
47 1 4.0912 3.0470 2.7087
48 1 4.8951 4.3791 3.5732
49 1 4.4288 4.5786 1.8670
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001255179422.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:08:59
Heat of formation + Delta-G solvation = -22.958628 kcal
Electronic energy + Delta-G solvation = -29827.159708 eV
Core-core repulsion = 26141.932949 eV
Total energy + Delta-G solvation = -3685.226759 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-40.10405 -39.00684 -37.22022 -35.67503 -33.03551 -32.01122 -31.59020 -30.83751
-29.83398 -28.38085 -27.68802 -25.30666 -23.24170 -22.64274 -22.23172 -21.53276
-20.54590 -20.18649 -18.54889 -17.14148 -17.05153 -15.99898 -15.91828 -15.52075
-15.29398 -14.56990 -14.23178 -13.98830 -13.55228 -13.49849 -13.32153 -13.08388
-12.76773 -12.62936 -12.56418 -12.38076 -12.16262 -11.92488 -11.73986 -11.38741
-11.31180 -11.28750 -11.18548 -11.02019 -10.91567 -10.56865 -10.46039 -10.31358
-10.11649 -10.01782 -9.92097 -9.75044 -9.57068 -9.31815 -8.51229 -8.05560
-7.86966 -7.46382 -7.09181 -5.76070 -3.56000 2.30900 2.44992 3.06481
3.17028 3.63511 3.64681 3.78995 4.67461 4.83290 4.97440 5.10654
5.14902 5.32298 5.38035 5.51623 5.62143 5.67453 5.71306 5.77264
5.78236 5.81249 5.81860 5.86456 5.91081 5.91870 5.95054 5.97935
6.02415 6.06917 6.15154 6.28888 6.42951 6.45610 6.55446 6.61736
6.66375 6.77673 6.93008 6.95767 7.06228 7.08869 7.24378 7.36789
7.52839 7.69826 8.00956 8.10563 8.32141 8.54474 8.70249 8.98307
9.47739 10.17467 11.59316
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.013374 B = 0.005927 C = 0.004971
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2093.183388 B = 4723.100362 C = 5631.501259
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.064 3.936
3 O -0.377 6.377
4 C 0.434 3.566
5 O -0.434 6.434
6 C 0.032 3.968
7 N -0.499 5.499
8 C 0.120 3.880
9 H 0.049 0.951
10 C -0.152 4.152
11 C -0.027 4.027
12 C -0.034 4.034
13 C -0.132 4.132
14 C -0.134 4.134
15 C -0.136 4.136
16 C -0.126 4.126
17 C 0.205 3.795
18 H 0.039 0.961
19 C -0.598 4.598
20 H 0.042 0.958
21 C 0.057 3.943
22 N -0.862 5.862
23 Si 1.031 2.969
24 H -0.294 1.294
25 H -0.294 1.294
26 H -0.294 1.294
27 C -0.153 4.153
28 C -0.157 4.157
29 H 0.062 0.938
30 H 0.063 0.937
31 H 0.073 0.927
32 H 0.067 0.933
33 H 0.063 0.937
34 H 0.074 0.926
35 H 0.099 0.901
36 H 0.064 0.936
37 H 0.054 0.946
38 H 0.054 0.946
39 H 0.126 0.874
40 H 0.106 0.894
41 H 0.103 0.897
42 H 0.103 0.897
43 H 0.101 0.899
44 H 0.311 0.689
45 H 0.054 0.946
46 H 0.064 0.936
47 H 0.047 0.953
48 H 0.041 0.959
49 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.687 7.302 0.169 9.903
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.010 4.010
3 O -0.296 6.296
4 C 0.273 3.727
5 O -0.315 6.315
6 C -0.096 4.096
7 N -0.227 5.227
8 C 0.012 3.988
9 H 0.066 0.934
10 C -0.209 4.209
11 C -0.027 4.027
12 C -0.052 4.052
13 C -0.150 4.150
14 C -0.153 4.153
15 C -0.154 4.154
16 C -0.145 4.145
17 C 0.102 3.898
18 H 0.057 0.943
19 C -0.636 4.636
20 H 0.060 0.940
21 C -0.158 4.158
22 N -0.499 5.499
23 Si 0.863 3.137
24 H -0.220 1.220
25 H -0.221 1.221
26 H -0.221 1.221
27 C -0.191 4.191
28 C -0.214 4.214
29 H 0.081 0.919
30 H 0.082 0.918
31 H 0.092 0.908
32 H 0.085 0.915
33 H 0.082 0.918
34 H 0.091 0.909
35 H 0.117 0.883
36 H 0.083 0.917
37 H 0.072 0.928
38 H 0.073 0.927
39 H 0.144 0.856
40 H 0.124 0.876
41 H 0.121 0.879
42 H 0.121 0.879
43 H 0.119 0.881
44 H 0.130 0.870
45 H 0.073 0.927
46 H 0.082 0.918
47 H 0.066 0.934
48 H 0.060 0.940
49 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -5.824 5.272 -0.905 7.908
hybrid contribution -0.569 1.431 1.549 2.184
sum -6.393 6.703 0.645 9.285
Atomic orbital electron populations
1.21773 0.93435 1.02382 1.02988 1.22817 0.94448 0.81320 1.02429
1.86443 1.26036 1.31431 1.85662 1.23876 0.79970 0.93799 0.75058
1.90916 1.58455 1.42090 1.40037 1.22115 0.93893 0.90290 1.03315
1.63253 0.98244 1.18588 1.42591 1.20494 0.91814 0.90251 0.96204
0.93357 1.22069 0.99265 1.00098 0.99495 1.19268 0.93385 0.95004
0.95074 1.20864 0.95554 0.93606 0.95221 1.20958 0.93762 0.99459
1.00859 1.20831 0.98230 0.98065 0.98146 1.20710 0.95508 1.00141
0.99066 1.20679 0.93077 1.00748 0.99985 1.19749 0.96629 0.90216
0.83246 0.94317 1.21411 0.91285 1.19618 1.31251 0.93977 1.24977
1.01025 0.96929 0.92858 1.70364 1.12296 1.39959 1.27237 0.84181
0.77059 0.76956 0.75497 1.22049 1.22112 1.22075 1.22302 0.95080
1.00905 1.00861 1.22147 0.99332 1.00126 0.99799 0.91906 0.91794
0.90772 0.91484 0.91818 0.90858 0.88330 0.91741 0.92755 0.92721
0.85590 0.87615 0.87885 0.87869 0.88064 0.86959 0.92723 0.91757
0.93387 0.94016 0.93235
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.60 10.29 37.16 0.38 -1.22 16
2 C 0.06 0.96 6.19 37.16 0.23 1.19 16
3 O -0.38 -6.53 10.22 -39.26 -0.40 -6.93 16
4 C 0.43 8.77 7.45 36.01 0.27 9.04 16
5 O -0.43 -10.67 11.05 -18.75 -0.21 -10.87 16
6 C 0.03 0.58 4.83 -4.98 -0.02 0.56 16
7 N -0.50 -10.34 1.75 -222.91 -0.39 -10.73 16
8 C 0.12 2.20 1.66 -68.86 -0.11 2.09 16
9 H 0.05 0.86 4.31 -51.93 -0.22 0.64 16
10 C -0.15 -2.33 8.49 37.16 0.32 -2.01 16
11 C -0.03 -0.53 2.89 -104.62 -0.30 -0.84 16
12 C -0.03 -0.74 6.45 -39.58 -0.26 -0.99 16
13 C -0.13 -2.71 10.05 -39.58 -0.40 -3.11 16
14 C -0.13 -2.51 10.05 -39.58 -0.40 -2.91 16
15 C -0.14 -2.46 10.05 -39.58 -0.40 -2.86 16
16 C -0.13 -2.37 8.77 -39.58 -0.35 -2.71 16
17 C 0.20 4.79 1.34 -68.87 -0.09 4.69 16
18 H 0.04 1.03 5.76 -51.93 -0.30 0.73 16
19 C -0.60 -15.90 5.73 -34.44 -0.20 -16.10 16
20 H 0.04 1.20 7.85 -52.49 -0.41 0.79 16
21 C 0.06 1.58 4.11 -17.82 -0.07 1.50 16
22 N -0.86 -24.66 11.38 55.43 0.63 -24.03 16
23 Si 1.03 26.08 29.96 -169.99 -5.09 20.99 16
24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16
25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16
26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16
27 C -0.15 -3.07 4.79 -26.73 -0.13 -3.20 16
28 C -0.16 -2.60 8.07 37.16 0.30 -2.30 16
29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
32 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16
33 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16
34 H 0.07 1.23 3.93 -51.93 -0.20 1.02 16
35 H 0.10 1.57 5.54 -51.93 -0.29 1.29 16
36 H 0.06 1.05 7.99 -51.93 -0.41 0.64 16
37 H 0.05 0.73 6.09 -51.93 -0.32 0.41 16
38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
39 H 0.13 3.02 6.86 -52.49 -0.36 2.66 16
40 H 0.11 2.07 8.06 -52.49 -0.42 1.65 16
41 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16
42 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16
43 H 0.10 1.71 7.58 -52.49 -0.40 1.31 16
44 H 0.31 8.58 3.66 -40.82 -0.15 8.43 16
45 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16
46 H 0.06 1.28 4.30 -51.93 -0.22 1.06 16
47 H 0.05 0.82 7.28 -51.93 -0.38 0.44 16
48 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16
49 H 0.05 0.75 5.52 -51.93 -0.29 0.47 16
LS Contribution 362.83 15.07 5.47 5.47
Total: -1.00 -30.53 362.83 -8.62 -39.15
By element:
Atomic # 1 Polarization: 13.52 SS G_CDS: -7.40 Total: 6.12 kcal
Atomic # 6 Polarization: -17.94 SS G_CDS: -1.23 Total: -19.17 kcal
Atomic # 7 Polarization: -35.00 SS G_CDS: 0.24 Total: -34.76 kcal
Atomic # 8 Polarization: -17.20 SS G_CDS: -0.61 Total: -17.81 kcal
Atomic # 14 Polarization: 26.08 SS G_CDS: -5.09 Total: 20.99 kcal
Total LS contribution 5.47 Total: 5.47 kcal
Total: -30.53 -8.62 -39.15 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001255179422.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.196 kcal
(2) G-P(sol) polarization free energy of solvation -30.530 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.335 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.959 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds