Wall clock time and date at job start Tue Mar 31 2020 12:08:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 O 1.45196 * 109.46980 * 2 1
4 4 C 1.34233 * 116.99968 * 179.97438 * 3 2 1
5 5 O 1.20820 * 119.99781 * 0.02562 * 4 3 2
6 6 C 1.50700 * 120.00067 * 180.02562 * 4 3 2
7 7 N 1.46898 * 109.47328 * 184.12133 * 6 4 3
8 8 C 1.46896 * 111.00156 * 169.46568 * 7 6 4
9 9 H 1.08999 * 109.47116 * 71.41020 * 8 7 6
10 10 C 1.53001 * 109.47484 * 311.40749 * 8 7 6
11 11 C 1.50708 * 109.47193 * 191.40530 * 8 7 6
12 12 C 1.38235 * 119.99742 * 49.51869 * 11 8 7
13 13 C 1.38233 * 119.99916 * 179.78483 * 12 11 8
14 14 C 1.38243 * 119.99903 * 0.44937 * 13 12 11
15 15 C 1.38235 * 119.99854 * 359.80790 * 14 13 12
16 16 C 1.38236 * 119.99771 * 229.79692 * 11 8 7
17 17 C 1.46902 * 110.99989 * 293.42484 * 7 6 4
18 18 H 1.09000 * 109.46976 * 34.88652 * 17 7 6
19 19 C 1.50702 * 109.47183 * 154.89079 * 17 7 6
20 20 H 1.07998 * 119.99971 * 116.87091 * 19 17 7
21 21 C 1.37871 * 119.99768 * 296.86708 * 19 17 7
22 22 N 1.31515 * 120.00562 * 22.93037 * 21 19 17
23 23 Si 1.86809 * 119.99866 * 202.93245 * 21 19 17
24 24 H 1.48501 * 109.46883 * 354.97502 * 23 21 19
25 25 H 1.48492 * 109.47317 * 114.97813 * 23 21 19
26 26 H 1.48500 * 109.47006 * 234.97868 * 23 21 19
27 27 C 1.52994 * 109.47013 * 274.89080 * 17 7 6
28 28 C 1.53005 * 109.47281 * 65.12066 * 27 17 7
29 29 H 1.09003 * 109.46958 * 299.99677 * 1 2 3
30 30 H 1.09001 * 109.47522 * 59.99518 * 1 2 3
31 31 H 1.09003 * 109.46994 * 180.02562 * 1 2 3
32 32 H 1.09003 * 109.46958 * 240.00323 * 2 1 3
33 33 H 1.08998 * 109.47078 * 120.00244 * 2 1 3
34 34 H 1.08996 * 109.47350 * 64.11940 * 6 4 3
35 35 H 1.09003 * 109.47157 * 304.11911 * 6 4 3
36 36 H 1.09004 * 109.46822 * 299.99899 * 10 8 7
37 37 H 1.08998 * 109.46521 * 59.99863 * 10 8 7
38 38 H 1.08994 * 109.47057 * 179.97438 * 10 8 7
39 39 H 1.08000 * 120.00060 * 0.02562 * 12 11 8
40 40 H 1.08002 * 120.00247 * 180.27657 * 13 12 11
41 41 H 1.07991 * 120.00246 * 179.83093 * 14 13 12
42 42 H 1.08001 * 120.00072 * 180.02562 * 15 14 13
43 43 H 1.07996 * 120.00459 * 359.97438 * 16 11 8
44 44 H 0.97002 * 119.99672 * 6.52172 * 22 21 19
45 45 H 1.09000 * 109.47288 * 185.12462 * 27 17 7
46 46 H 1.09001 * 109.47061 * 305.12712 * 27 17 7
47 47 H 1.09002 * 109.46733 * 41.44064 * 28 27 17
48 48 H 1.09003 * 109.47375 * 161.43790 * 28 27 17
49 49 H 1.08999 * 109.47512 * 281.44250 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3689 0.0000
4 6 3.3447 1.5448 0.0005
5 8 4.0807 0.5867 0.0005
6 6 3.9207 2.9374 0.0012
7 7 5.3844 2.8620 -0.0979
8 6 5.9640 4.1879 -0.3507
9 1 5.8800 4.7986 0.5482
10 6 5.2107 4.8635 -1.4984
11 6 7.4168 4.0385 -0.7225
12 6 7.7912 3.1325 -1.6971
13 6 9.1233 2.9986 -2.0412
14 6 10.0820 3.7642 -1.4043
15 6 9.7082 4.6664 -0.4260
16 6 8.3756 4.8035 -0.0849
17 6 5.9631 2.2558 1.1086
18 1 5.2900 1.4867 1.4874
19 6 7.2944 1.6359 0.7702
20 1 8.1970 2.0105 1.2299
21 6 7.3600 0.5905 -0.1263
22 7 6.4001 0.4197 -1.0089
23 14 8.8126 -0.5835 -0.0874
24 1 9.8070 -0.1077 0.9076
25 1 8.3427 -1.9401 0.2921
26 1 9.4429 -0.6358 -1.4310
27 6 6.1591 3.3332 2.1769
28 6 4.7955 3.8734 2.6128
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5139 -0.8899
31 1 -0.3633 -1.0277 0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5139 0.8899
34 1 3.6448 3.4444 0.9258
35 1 3.5272 3.4938 -0.8496
36 1 5.2948 4.2527 -2.3974
37 1 4.1600 4.9715 -1.2294
38 1 5.6405 5.8474 -1.6856
39 1 7.0425 2.5319 -2.1923
40 1 9.4153 2.2939 -2.8058
41 1 11.1230 3.6577 -1.6712
42 1 10.4572 5.2648 0.0714
43 1 8.0835 5.5084 0.6794
44 1 5.6951 1.0807 -1.0927
45 1 6.6714 2.9028 3.0374
46 1 6.7579 4.1466 1.7671
47 1 4.0912 3.0470 2.7087
48 1 4.8951 4.3791 3.5732
49 1 4.4288 4.5786 1.8670
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001255179422.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:08:58
Heat of formation + Delta-G solvation = -37.836967 kcal
Electronic energy + Delta-G solvation = -29827.804881 eV
Core-core repulsion = 26141.932949 eV
Total energy + Delta-G solvation = -3685.871933 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.66139 -40.51641 -38.73258 -37.23166 -34.72451 -33.75428 -32.87456 -32.21147
-31.34619 -29.85042 -29.22830 -26.98110 -24.55228 -24.40262 -23.58279 -23.02474
-22.14572 -21.67714 -20.11003 -18.97836 -18.61541 -17.50182 -17.37092 -16.98231
-16.82678 -16.12459 -15.71245 -15.60165 -15.36955 -14.97015 -14.79034 -14.53442
-14.27888 -14.03700 -13.87356 -13.73736 -13.58386 -13.33934 -13.16211 -12.85734
-12.73846 -12.68118 -12.61199 -12.44281 -12.43883 -12.31221 -12.19442 -11.92883
-11.82671 -11.63899 -11.43548 -11.25786 -11.22987 -11.00676 -10.46979 -9.93254
-9.40666 -9.10215 -8.77248 -7.79679 -5.65022 0.80233 0.93501 1.49704
1.53772 1.58704 1.73159 1.79363 2.77636 3.16653 3.40925 3.77531
3.95635 3.99460 4.03843 4.16263 4.20028 4.28068 4.33782 4.36054
4.36682 4.39803 4.41487 4.44843 4.52972 4.55071 4.60896 4.81017
4.88785 4.92708 4.97163 5.00088 5.02946 5.08625 5.12447 5.14569
5.19678 5.25558 5.42160 5.45521 5.55820 5.60833 5.61707 5.86017
5.97345 6.12273 6.35038 6.50813 6.60969 6.76710 6.89630 7.15495
7.42422 8.12528 9.52335
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.013374 B = 0.005927 C = 0.004971
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2093.183388 B = 4723.100362 C = 5631.501259
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C 0.057 3.943
3 O -0.368 6.368
4 C 0.433 3.567
5 O -0.485 6.485
6 C 0.034 3.966
7 N -0.516 5.516
8 C 0.119 3.881
9 H 0.062 0.938
10 C -0.146 4.146
11 C -0.037 4.037
12 C -0.052 4.052
13 C -0.151 4.151
14 C -0.139 4.139
15 C -0.136 4.136
16 C -0.131 4.131
17 C 0.214 3.786
18 H 0.002 0.998
19 C -0.596 4.596
20 H 0.017 0.983
21 C 0.028 3.972
22 N -0.890 5.890
23 Si 1.053 2.947
24 H -0.289 1.289
25 H -0.299 1.299
26 H -0.291 1.291
27 C -0.148 4.148
28 C -0.148 4.148
29 H 0.072 0.928
30 H 0.072 0.928
31 H 0.096 0.904
32 H 0.052 0.948
33 H 0.052 0.948
34 H 0.096 0.904
35 H 0.126 0.874
36 H 0.046 0.954
37 H 0.078 0.922
38 H 0.074 0.926
39 H 0.094 0.906
40 H 0.102 0.898
41 H 0.129 0.871
42 H 0.136 0.864
43 H 0.124 0.876
44 H 0.313 0.687
45 H 0.036 0.964
46 H 0.070 0.930
47 H 0.038 0.962
48 H 0.065 0.935
49 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.679 9.970 0.961 12.621
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.017 4.017
3 O -0.287 6.287
4 C 0.275 3.725
5 O -0.369 6.369
6 C -0.094 4.094
7 N -0.242 5.242
8 C 0.012 3.988
9 H 0.080 0.920
10 C -0.203 4.203
11 C -0.038 4.038
12 C -0.071 4.071
13 C -0.170 4.170
14 C -0.157 4.157
15 C -0.154 4.154
16 C -0.149 4.149
17 C 0.109 3.891
18 H 0.020 0.980
19 C -0.634 4.634
20 H 0.036 0.964
21 C -0.183 4.183
22 N -0.529 5.529
23 Si 0.883 3.117
24 H -0.215 1.215
25 H -0.227 1.227
26 H -0.218 1.218
27 C -0.187 4.187
28 C -0.205 4.205
29 H 0.091 0.909
30 H 0.091 0.909
31 H 0.115 0.885
32 H 0.071 0.929
33 H 0.071 0.929
34 H 0.114 0.886
35 H 0.144 0.856
36 H 0.065 0.935
37 H 0.097 0.903
38 H 0.093 0.907
39 H 0.112 0.888
40 H 0.120 0.880
41 H 0.147 0.853
42 H 0.154 0.846
43 H 0.142 0.858
44 H 0.132 0.868
45 H 0.055 0.945
46 H 0.088 0.912
47 H 0.057 0.943
48 H 0.084 0.916
49 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -6.834 7.962 -0.118 10.493
hybrid contribution -0.269 0.614 1.314 1.475
sum -7.103 8.576 1.196 11.200
Atomic orbital electron populations
1.21772 0.89593 1.04203 1.03857 1.23093 0.97353 0.80040 1.01246
1.86443 1.24476 1.32789 1.84947 1.24381 0.80488 0.94123 0.73545
1.90907 1.59756 1.43727 1.42543 1.22232 0.92126 0.89540 1.05495
1.62671 0.99898 1.20454 1.41217 1.20625 0.91243 0.89142 0.97827
0.92021 1.22029 1.00453 1.00338 0.97478 1.19488 0.94795 0.94871
0.94627 1.20663 0.95315 0.94586 0.96515 1.21101 0.94081 1.00253
1.01536 1.21140 0.99106 0.97545 0.97910 1.21132 0.96133 0.99713
0.98393 1.21015 0.93220 1.00724 0.99982 1.19352 0.94221 0.90567
0.84915 0.98002 1.21393 0.91814 1.20051 1.30179 0.96446 1.25486
1.01753 0.98105 0.92991 1.70365 1.13416 1.40841 1.28294 0.83882
0.76200 0.76000 0.75585 1.21508 1.22666 1.21803 1.22178 0.97354
1.00019 0.99133 1.22028 0.96630 1.00196 1.01604 0.90935 0.90934
0.88490 0.92931 0.92941 0.88642 0.85604 0.93461 0.90322 0.90662
0.88819 0.88024 0.85345 0.84639 0.85765 0.86770 0.94501 0.91184
0.94267 0.91611 0.91256
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.68 10.29 71.98 0.74 -1.94 16
2 C 0.06 1.70 6.19 71.98 0.45 2.14 16
3 O -0.37 -12.54 10.22 -51.44 -0.53 -13.07 16
4 C 0.43 17.61 7.45 71.24 0.53 18.14 16
5 O -0.49 -24.73 11.05 21.98 0.24 -24.49 16
6 C 0.03 1.18 4.83 85.56 0.41 1.60 16
7 N -0.52 -21.15 1.75 -859.16 -1.51 -22.66 16
8 C 0.12 4.15 1.66 44.17 0.07 4.22 16
9 H 0.06 1.99 4.31 -2.39 -0.01 1.98 16
10 C -0.15 -4.10 8.49 71.98 0.61 -3.49 16
11 C -0.04 -1.46 2.89 -19.86 -0.06 -1.52 16
12 C -0.05 -2.31 6.45 22.27 0.14 -2.16 16
13 C -0.15 -6.31 10.05 22.27 0.22 -6.08 16
14 C -0.14 -5.01 10.05 22.27 0.22 -4.78 16
15 C -0.14 -4.58 10.05 22.27 0.22 -4.35 16
16 C -0.13 -4.62 8.77 22.27 0.20 -4.42 16
17 C 0.21 10.10 1.34 44.17 0.06 10.16 16
18 H 0.00 0.12 5.76 -2.39 -0.01 0.10 16
19 C -0.60 -32.53 5.73 25.60 0.15 -32.38 16
20 H 0.02 1.01 7.85 -2.91 -0.02 0.99 16
21 C 0.03 1.62 4.11 84.65 0.35 1.97 16
22 N -0.89 -53.05 11.38 21.44 0.24 -52.80 16
23 Si 1.05 54.27 29.96 68.60 2.06 56.32 16
24 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16
25 H -0.30 -15.53 7.11 99.48 0.71 -14.82 16
26 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16
27 C -0.15 -5.78 4.79 30.59 0.15 -5.63 16
28 C -0.15 -4.46 8.07 71.98 0.58 -3.88 16
29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16
30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16
31 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16
32 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16
33 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16
34 H 0.10 2.92 3.93 -2.39 -0.01 2.91 16
35 H 0.13 3.68 5.54 -2.39 -0.01 3.67 16
36 H 0.05 1.50 7.99 -2.39 -0.02 1.48 16
37 H 0.08 1.80 6.09 -2.39 -0.01 1.79 16
38 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16
39 H 0.09 4.72 6.86 -2.91 -0.02 4.70 16
40 H 0.10 4.15 8.06 -2.91 -0.02 4.12 16
41 H 0.13 3.88 8.06 -2.92 -0.02 3.85 16
42 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16
43 H 0.12 3.75 7.58 -2.91 -0.02 3.73 16
44 H 0.31 17.96 3.66 -92.71 -0.34 17.62 16
45 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16
46 H 0.07 2.64 4.30 -2.39 -0.01 2.63 16
47 H 0.04 1.25 7.28 -2.39 -0.02 1.24 16
48 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16
49 H 0.07 1.82 5.52 -2.39 -0.01 1.80 16
Total: -1.00 -70.06 362.83 6.93 -63.13
By element:
Atomic # 1 Polarization: 24.61 SS G_CDS: 1.37 Total: 25.98 kcal
Atomic # 6 Polarization: -37.46 SS G_CDS: 5.05 Total: -32.41 kcal
Atomic # 7 Polarization: -74.20 SS G_CDS: -1.26 Total: -75.46 kcal
Atomic # 8 Polarization: -37.27 SS G_CDS: -0.28 Total: -37.56 kcal
Atomic # 14 Polarization: 54.27 SS G_CDS: 2.06 Total: 56.32 kcal
Total: -70.06 6.93 -63.13 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001255179422.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.294 kcal
(2) G-P(sol) polarization free energy of solvation -70.057 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.763 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.926 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.131 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.837 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds