Wall clock time and date at job start Tue Mar 31 2020 12:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45203 * 109.46799 * 2 1 4 4 C 1.34714 * 116.99892 * 180.02562 * 3 2 1 5 5 O 1.21474 * 120.00084 * 359.97438 * 4 3 2 6 6 C 1.47727 * 119.99854 * 180.02562 * 4 3 2 7 7 C 1.39626 * 120.14723 * 180.02562 * 6 4 3 8 8 C 1.37945 * 119.84996 * 180.29817 * 7 6 4 9 9 C 1.38373 * 120.14565 * 359.44309 * 8 7 6 10 10 C 1.50704 * 119.84842 * 180.27988 * 9 8 7 11 11 C 1.52995 * 109.46836 * 270.27473 * 10 9 8 12 12 H 1.09000 * 109.47471 * 55.00054 * 11 10 9 13 13 C 1.53008 * 109.46980 * 175.00021 * 11 10 9 14 14 N 1.46895 * 109.47631 * 294.99866 * 11 10 9 15 15 C 1.46897 * 111.00456 * 153.82754 * 14 11 10 16 16 H 1.09008 * 109.47257 * 328.03209 * 15 14 11 17 17 C 1.50699 * 109.47335 * 88.03004 * 15 14 11 18 18 H 1.08009 * 119.99399 * 359.97438 * 17 15 14 19 19 C 1.37873 * 120.00370 * 180.02562 * 17 15 14 20 20 N 1.31509 * 120.00193 * 359.97438 * 19 17 15 21 21 Si 1.86807 * 120.00061 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46974 * 359.97438 * 21 19 17 23 23 H 1.48489 * 109.47320 * 119.99621 * 21 19 17 24 24 H 1.48502 * 109.46757 * 239.99886 * 21 19 17 25 25 C 1.53001 * 109.47494 * 208.03081 * 15 14 11 26 26 C 1.53002 * 109.47121 * 65.21001 * 25 15 14 27 27 C 1.38370 * 120.30122 * 0.55756 * 9 8 7 28 28 C 1.37941 * 120.15220 * 359.72465 * 27 9 8 29 29 H 1.08996 * 109.47267 * 59.99851 * 1 2 3 30 30 H 1.09000 * 109.46421 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46745 * 300.00084 * 1 2 3 32 32 H 1.08998 * 109.47190 * 240.00212 * 2 1 3 33 33 H 1.08996 * 109.47719 * 119.99866 * 2 1 3 34 34 H 1.08004 * 120.07850 * 0.02562 * 7 6 4 35 35 H 1.07995 * 119.93002 * 179.69745 * 8 7 6 36 36 H 1.09002 * 109.46795 * 30.27697 * 10 9 8 37 37 H 1.08997 * 109.46874 * 150.27311 * 10 9 8 38 38 H 1.09000 * 109.46992 * 59.99740 * 13 11 10 39 39 H 1.08996 * 109.47317 * 180.02562 * 13 11 10 40 40 H 1.09005 * 109.46812 * 299.99801 * 13 11 10 41 41 H 1.00904 * 111.00420 * 277.78776 * 14 11 10 42 42 H 0.97000 * 120.00500 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.47363 * 185.20858 * 25 15 14 44 44 H 1.08996 * 109.47118 * 305.20920 * 25 15 14 45 45 H 1.09000 * 109.47414 * 54.46453 * 26 25 15 46 46 H 1.08998 * 109.47082 * 174.47081 * 26 25 15 47 47 H 1.09002 * 109.47031 * 294.46683 * 26 25 15 48 48 H 1.08004 * 119.92166 * 179.74237 * 27 9 8 49 49 H 1.08000 * 120.07778 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5456 -0.0005 5 8 4.0895 0.5823 -0.0005 6 6 3.9141 2.9107 0.0000 7 6 5.2978 3.0973 -0.0011 8 6 5.8184 4.3747 0.0056 9 6 4.9725 5.4698 0.0018 10 6 5.5485 6.8625 0.0029 11 6 5.7446 7.3321 1.4457 12 1 6.3569 6.6082 1.9834 13 6 6.4436 8.6932 1.4484 14 7 4.4369 7.4520 2.1038 15 6 4.5618 7.2847 3.5578 16 1 5.3758 6.5930 3.7754 17 6 4.8533 8.6194 4.1940 18 1 4.9377 9.5035 3.5793 19 6 5.0132 8.7117 5.5603 20 7 4.9109 7.6351 6.3086 21 14 5.3738 10.3664 6.3488 22 1 5.4384 11.4125 5.2967 23 1 4.2957 10.7003 7.3138 24 1 6.6744 10.3016 7.0624 25 6 3.2536 6.7260 4.1213 26 6 3.0238 5.3157 3.5744 27 6 3.6003 5.2921 0.0029 28 6 3.0664 4.0202 0.0020 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8899 34 1 5.9591 2.2434 -0.0028 35 1 6.8884 4.5205 0.0097 36 1 6.5093 6.8586 -0.5119 37 1 4.8645 7.5389 -0.5096 38 1 5.8314 9.4171 0.9107 39 1 6.5838 9.0276 2.4763 40 1 7.4141 8.6042 0.9602 41 1 3.9974 8.3317 1.8775 42 1 5.0230 7.7001 7.2699 43 1 3.3131 6.6887 5.2090 44 1 2.4259 7.3701 3.8246 45 1 3.8961 4.6972 3.7862 46 1 2.1453 4.8801 4.0503 47 1 2.8664 5.3650 2.4969 48 1 2.9458 6.1512 0.0041 49 1 1.9951 3.8829 0.0033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257150833.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:55 Heat of formation + Delta-G solvation = -83.992096 kcal Electronic energy + Delta-G solvation = -27367.068289 eV Core-core repulsion = 23679.194920 eV Total energy + Delta-G solvation = -3687.873369 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.50983 -38.99063 -36.95531 -36.47386 -34.08570 -32.20875 -31.67049 -31.15539 -30.76217 -28.72779 -26.77791 -25.98438 -23.89400 -22.71397 -22.51565 -22.29758 -20.69365 -20.01838 -19.47749 -17.98111 -16.95978 -16.58840 -16.52764 -15.39391 -15.22060 -14.74569 -14.38945 -14.28728 -14.07428 -13.75410 -13.51876 -13.27915 -13.17085 -12.96828 -12.80004 -12.58248 -12.27815 -12.05003 -11.87216 -11.78223 -11.69361 -11.53128 -11.28760 -11.11052 -10.85506 -10.80600 -10.74572 -10.65227 -10.64966 -10.39981 -10.32060 -10.09278 -9.56986 -9.43335 -9.01960 -8.74525 -8.48037 -8.37176 -7.25016 -5.99949 -4.12236 0.88053 1.61332 2.61152 2.67022 3.24032 3.33330 3.35026 3.98576 4.37949 4.64921 4.74016 4.80939 4.95581 5.06451 5.07009 5.14349 5.19400 5.28904 5.44551 5.55156 5.56999 5.63664 5.66716 5.76159 5.77977 5.95127 6.00126 6.10441 6.18627 6.23551 6.31147 6.41529 6.45719 6.47119 6.54755 6.57069 6.64771 6.77463 6.88797 6.94569 7.10105 7.17661 7.22842 7.47873 7.61331 7.77502 7.78790 8.11567 8.15058 8.34766 8.67348 9.01273 9.54952 11.00010 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.003223 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.149554 B = 8685.881942 C = 9742.270209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.354 6.354 4 C 0.514 3.486 5 O -0.517 6.517 6 C -0.144 4.144 7 C -0.056 4.056 8 C -0.137 4.137 9 C -0.012 4.012 10 C -0.079 4.079 11 C 0.098 3.902 12 H 0.070 0.930 13 C -0.180 4.180 14 N -0.681 5.681 15 C 0.219 3.781 16 H 0.029 0.971 17 C -0.541 4.541 18 H 0.057 0.943 19 C 0.067 3.933 20 N -0.883 5.883 21 Si 0.885 3.115 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.285 1.285 25 C -0.104 4.104 26 C -0.135 4.135 27 C -0.100 4.100 28 C -0.061 4.061 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.328 0.672 42 H 0.260 0.740 43 H 0.087 0.913 44 H 0.029 0.971 45 H 0.033 0.967 46 H 0.020 0.980 47 H 0.051 0.949 48 H 0.133 0.867 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.282 -8.801 -14.455 17.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.271 6.271 4 C 0.360 3.640 5 O -0.407 6.407 6 C -0.146 4.146 7 C -0.074 4.074 8 C -0.155 4.155 9 C -0.012 4.012 10 C -0.117 4.117 11 C -0.013 4.013 12 H 0.088 0.912 13 C -0.239 4.239 14 N -0.310 5.310 15 C 0.111 3.889 16 H 0.047 0.953 17 C -0.580 4.580 18 H 0.075 0.925 19 C -0.136 4.136 20 N -0.522 5.522 21 Si 0.713 3.287 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.212 1.212 25 C -0.143 4.143 26 C -0.193 4.193 27 C -0.118 4.118 28 C -0.080 4.080 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.144 0.856 42 H 0.070 0.930 43 H 0.106 0.894 44 H 0.047 0.953 45 H 0.052 0.948 46 H 0.040 0.960 47 H 0.070 0.930 48 H 0.151 0.849 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.264 -9.856 -14.362 17.933 hybrid contribution 0.688 1.560 1.031 1.992 sum -3.577 -8.296 -13.331 16.103 Atomic orbital electron populations 1.21808 0.92593 1.02875 1.03696 1.23007 0.95350 0.80250 1.02520 1.86562 1.24087 1.32119 1.84304 1.21331 0.80337 0.90134 0.72169 1.90798 1.60428 1.42701 1.46745 1.18943 0.94086 0.89475 1.12054 1.21093 0.93101 0.97740 0.95484 1.20966 0.99969 0.91584 1.03016 1.20116 0.93569 0.95360 0.92153 1.20873 1.00172 0.92283 0.98412 1.21345 0.91910 0.95764 0.92255 0.91174 1.22595 0.99370 0.98177 1.03728 1.60936 1.18728 1.38765 1.12541 1.19153 0.93850 0.94793 0.81072 0.95293 1.21945 1.48767 0.94787 0.92527 0.92503 1.24940 0.95103 0.96056 0.97495 1.69891 1.49474 1.27536 1.05267 0.86663 0.77885 0.84661 0.79488 1.19956 1.21052 1.21170 1.21481 0.97459 0.92653 1.02716 1.21715 0.98394 0.98710 1.00472 1.20980 0.94851 0.96660 0.99278 1.21389 0.99742 0.91770 0.95059 0.91466 0.90320 0.91266 0.91364 0.91215 0.85264 0.85586 0.91406 0.90980 0.93551 0.90105 0.94078 0.85590 0.93008 0.89440 0.95263 0.94804 0.96039 0.93006 0.84941 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.29 37.16 0.38 -0.73 16 2 C 0.06 0.63 6.20 37.16 0.23 0.86 16 3 O -0.35 -4.60 9.47 -40.53 -0.38 -4.99 16 4 C 0.51 7.64 7.90 34.61 0.27 7.91 16 5 O -0.52 -8.64 16.14 -19.25 -0.31 -8.95 16 6 C -0.14 -2.09 5.87 -104.98 -0.62 -2.70 16 7 C -0.06 -0.78 9.60 -39.17 -0.38 -1.16 16 8 C -0.14 -1.84 9.68 -39.64 -0.38 -2.22 16 9 C -0.01 -0.16 4.96 -104.52 -0.52 -0.68 16 10 C -0.08 -1.04 5.02 -27.88 -0.14 -1.18 16 11 C 0.10 1.62 2.58 -67.71 -0.17 1.44 16 12 H 0.07 1.30 7.37 -51.93 -0.38 0.92 16 13 C -0.18 -2.88 8.78 37.16 0.33 -2.56 16 14 N -0.68 -12.64 4.99 -100.95 -0.50 -13.14 16 15 C 0.22 5.07 1.98 -68.87 -0.14 4.93 16 16 H 0.03 0.77 7.36 -51.92 -0.38 0.39 16 17 C -0.54 -13.67 7.11 -34.44 -0.24 -13.91 16 18 H 0.06 1.42 6.76 -52.48 -0.35 1.06 16 19 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 20 N -0.88 -24.46 11.29 55.43 0.63 -23.84 16 21 Si 0.88 20.60 29.54 -169.99 -5.02 15.58 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 C -0.10 -2.42 5.45 -26.73 -0.15 -2.57 16 26 C -0.14 -2.78 9.74 37.16 0.36 -2.42 16 27 C -0.10 -1.36 8.02 -39.64 -0.32 -1.68 16 28 C -0.06 -0.83 9.49 -39.17 -0.37 -1.20 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.13 1.72 7.65 -52.48 -0.40 1.31 16 35 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 36 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 39 H 0.08 1.56 6.06 -51.93 -0.31 1.24 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.33 6.08 8.07 -39.29 -0.32 5.77 16 42 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.09 2.31 5.95 -51.93 -0.31 2.00 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.05 0.98 6.46 -51.93 -0.34 0.64 16 48 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 49 H 0.13 1.58 7.61 -52.49 -0.40 1.19 16 LS Contribution 396.00 15.07 5.97 5.97 Total: -1.00 -28.37 396.00 -9.82 -38.18 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -8.24 Total: 7.39 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -1.95 Total: -16.21 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.12 Total: -36.98 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.69 Total: -13.93 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -28.37 -9.82 -38.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257150833.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.809 kcal (2) G-P(sol) polarization free energy of solvation -28.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds