Wall clock time and date at job start Tue Mar 31 2020 12:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47159 * 2 1 4 4 H 1.08997 * 109.47096 * 54.99974 * 3 2 1 5 5 N 1.46497 * 109.46931 * 294.99708 * 3 2 1 6 6 C 1.34779 * 120.00152 * 85.00526 * 5 3 2 7 7 O 1.21284 * 119.99695 * 359.97438 * 6 5 3 8 8 C 1.50704 * 120.00126 * 180.02562 * 6 5 3 9 9 H 1.08996 * 109.47011 * 299.99748 * 8 6 5 10 10 C 1.50705 * 109.47000 * 59.99409 * 8 6 5 11 11 H 1.07996 * 120.00103 * 33.32950 * 10 8 6 12 12 C 1.37873 * 119.99889 * 213.32750 * 10 8 6 13 13 N 1.31522 * 119.99706 * 6.35498 * 12 10 8 14 14 Si 1.86801 * 120.00169 * 186.35598 * 12 10 8 15 15 H 1.48498 * 109.47046 * 90.00149 * 14 12 10 16 16 H 1.48500 * 109.47067 * 209.99908 * 14 12 10 17 17 H 1.48499 * 109.46822 * 330.00082 * 14 12 10 18 18 C 1.50700 * 109.46913 * 179.97438 * 8 6 5 19 19 C 1.38239 * 119.99558 * 293.80087 * 18 8 6 20 20 C 1.38238 * 119.99383 * 179.79317 * 19 18 8 21 21 C 1.38237 * 120.00191 * 0.43695 * 20 19 18 22 22 C 1.38235 * 119.99949 * 359.81776 * 21 20 19 23 23 C 1.38235 * 120.00104 * 359.97387 * 22 21 20 24 24 C 1.53002 * 109.47021 * 175.00006 * 3 2 1 25 25 H 1.09006 * 109.46880 * 175.00299 * 24 3 2 26 26 O 1.42894 * 109.47522 * 54.99591 * 24 3 2 27 27 C 1.53001 * 109.46978 * 294.99460 * 24 3 2 28 28 C 1.53001 * 109.47331 * 180.02562 * 27 24 3 29 29 C 1.52994 * 109.47445 * 300.00542 * 27 24 3 30 30 H 1.08996 * 109.47166 * 300.00346 * 1 2 3 31 31 H 1.09000 * 109.46835 * 60.00064 * 1 2 3 32 32 H 1.08993 * 109.47245 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47166 * 239.99654 * 2 1 3 34 34 H 1.08999 * 109.47106 * 119.99459 * 2 1 3 35 35 H 0.97006 * 120.00158 * 264.99943 * 5 3 2 36 36 H 0.97004 * 119.99491 * 179.97438 * 13 12 10 37 37 H 1.07995 * 120.00320 * 0.02562 * 19 18 8 38 38 H 1.07997 * 119.99987 * 180.27715 * 20 19 18 39 39 H 1.07998 * 120.00336 * 179.83597 * 21 20 19 40 40 H 1.07999 * 119.99966 * 180.02562 * 22 21 20 41 41 H 1.07998 * 120.00358 * 179.97438 * 23 22 21 42 42 H 0.96695 * 113.99996 * 300.00265 * 26 24 3 43 43 H 1.09009 * 109.47042 * 60.00375 * 27 24 3 44 44 H 1.08999 * 109.46748 * 59.99981 * 28 27 24 45 45 H 1.08996 * 109.47467 * 180.02562 * 28 27 24 46 46 H 1.09001 * 109.46986 * 300.00426 * 28 27 24 47 47 H 1.09006 * 109.47324 * 299.99719 * 29 27 24 48 48 H 1.08994 * 109.47566 * 59.99619 * 29 27 24 49 49 H 1.09004 * 109.47381 * 180.02562 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 0.4352 2.6644 -1.3670 7 8 -0.3395 2.6320 -0.4345 8 6 0.0363 3.3376 -2.6550 9 1 0.7277 4.1528 -2.8681 10 6 0.0793 2.3356 -3.7798 11 1 -0.1696 1.3016 -3.5917 12 6 0.4362 2.7388 -5.0490 13 7 0.8593 3.9671 -5.2541 14 14 0.3189 1.5406 -6.4774 15 1 -1.0283 1.6367 -7.0946 16 1 1.3523 1.8750 -7.4900 17 1 0.5394 0.1579 -5.9828 18 6 -1.3615 3.8852 -2.5236 19 6 -2.4314 3.0216 -2.3802 20 6 -3.7132 3.5241 -2.2554 21 6 -3.9260 4.8897 -2.2831 22 6 -2.8567 5.7530 -2.4318 23 6 -1.5744 5.2508 -2.5523 24 6 3.5648 1.4443 0.1257 25 1 3.9355 2.4655 0.0367 26 8 4.1294 0.6403 -0.9120 27 6 3.9649 0.8736 1.4878 28 6 5.4897 0.8760 1.6138 29 6 3.3605 1.7343 2.5989 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 2.2720 2.1231 -1.9978 36 1 1.1108 4.2507 -6.1470 37 1 -2.2655 1.9546 -2.3619 38 1 -4.5486 2.8497 -2.1389 39 1 -4.9277 5.2822 -2.1883 40 1 -3.0229 6.8199 -2.4530 41 1 -0.7390 5.9252 -2.6689 42 1 3.8427 -0.2830 -0.8942 43 1 3.5942 -0.1476 1.5770 44 1 5.8600 1.8973 1.5248 45 1 5.7747 0.4690 2.5840 46 1 5.9206 0.2630 0.8222 47 1 3.7312 2.7556 2.5098 48 1 2.2742 1.7331 2.5093 49 1 3.6459 1.3280 3.5693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363348118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:52 Heat of formation + Delta-G solvation = -106.331591 kcal Electronic energy + Delta-G solvation = -28343.062302 eV Core-core repulsion = 24654.220219 eV Total energy + Delta-G solvation = -3688.842082 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.23166 -39.98924 -38.93175 -35.61561 -35.45975 -35.10886 -33.15872 -32.64315 -31.54035 -29.61907 -28.60317 -27.70900 -25.79425 -24.73181 -23.25291 -23.09234 -21.96663 -20.95668 -20.59806 -18.66497 -18.03129 -17.71377 -17.36826 -16.84020 -16.53491 -16.22644 -16.06674 -15.79872 -15.38109 -15.25708 -14.79159 -14.56638 -14.14223 -14.05700 -13.96250 -13.77066 -13.46572 -13.31959 -13.26341 -13.00890 -12.98962 -12.88626 -12.77789 -12.67972 -12.44578 -12.22959 -12.14323 -11.95005 -11.81158 -11.66504 -11.60456 -11.30732 -11.24476 -10.78822 -10.68523 -10.26344 -9.68557 -9.56306 -9.25571 -8.20948 -6.30204 0.74892 0.80504 1.41021 1.43521 1.51575 2.04902 2.43745 2.56624 3.09039 3.27077 3.46985 3.69293 3.83381 3.97089 4.12261 4.21996 4.23482 4.29529 4.33851 4.39993 4.46328 4.52180 4.62952 4.67081 4.72263 4.82868 4.85693 4.90836 4.97565 4.98932 5.02637 5.03669 5.11447 5.14452 5.23024 5.27335 5.37333 5.45507 5.46197 5.46969 5.52373 5.65960 5.77926 5.80850 5.86997 5.97489 6.24778 6.40464 6.74929 6.80718 6.88175 7.36289 7.66504 8.87604 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011547 B = 0.004701 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.331888 B = 5954.313866 C = 7280.323822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.131 4.131 3 C 0.111 3.889 4 H 0.080 0.920 5 N -0.713 5.713 6 C 0.530 3.470 7 O -0.581 6.581 8 C 0.049 3.951 9 H 0.061 0.939 10 C -0.509 4.509 11 H 0.052 0.948 12 C 0.034 3.966 13 N -0.908 5.908 14 Si 0.950 3.050 15 H -0.282 1.282 16 H -0.281 1.281 17 H -0.265 1.265 18 C -0.036 4.036 19 C -0.106 4.106 20 C -0.135 4.135 21 C -0.144 4.144 22 C -0.129 4.129 23 C -0.146 4.146 24 C 0.114 3.886 25 H 0.089 0.911 26 O -0.565 6.565 27 C -0.117 4.117 28 C -0.139 4.139 29 C -0.152 4.152 30 H 0.043 0.957 31 H 0.030 0.970 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.405 0.595 36 H 0.266 0.734 37 H 0.095 0.905 38 H 0.135 0.865 39 H 0.147 0.853 40 H 0.139 0.861 41 H 0.104 0.896 42 H 0.384 0.616 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.052 0.948 48 H 0.050 0.950 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.891 -5.695 11.453 13.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.169 4.169 3 C 0.006 3.994 4 H 0.098 0.902 5 N -0.363 5.363 6 C 0.319 3.681 7 O -0.462 6.462 8 C 0.027 3.973 9 H 0.079 0.921 10 C -0.546 4.546 11 H 0.070 0.930 12 C -0.168 4.168 13 N -0.545 5.545 14 Si 0.776 3.224 15 H -0.208 1.208 16 H -0.206 1.206 17 H -0.190 1.190 18 C -0.037 4.037 19 C -0.125 4.125 20 C -0.153 4.153 21 C -0.161 4.161 22 C -0.147 4.147 23 C -0.164 4.164 24 C 0.054 3.946 25 H 0.107 0.893 26 O -0.373 6.373 27 C -0.136 4.136 28 C -0.196 4.196 29 C -0.209 4.209 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.240 0.760 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.153 0.847 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.122 0.878 42 H 0.234 0.766 43 H 0.109 0.891 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.729 -5.039 11.820 13.379 hybrid contribution -0.061 -0.707 -1.351 1.526 sum 3.668 -5.746 10.469 12.493 Atomic orbital electron populations 1.21675 0.96388 1.00201 1.01242 1.21958 0.96018 0.95877 1.03045 1.21839 0.95927 0.94132 0.87499 0.90216 1.45870 1.16530 1.57344 1.16554 1.21135 0.81039 0.76895 0.89031 1.90550 1.52141 1.61636 1.41905 1.18020 0.91511 0.96940 0.90796 0.92064 1.20698 1.47342 0.93892 0.92716 0.92993 1.25565 0.93606 0.96665 1.00943 1.69992 1.43248 1.18494 1.22806 0.85666 0.77629 0.79771 0.79311 1.20823 1.20627 1.18953 1.20135 0.96554 0.93179 0.93839 1.20813 0.93020 0.98692 0.99924 1.21331 0.96442 0.96408 1.01141 1.21264 0.99501 0.93048 1.02336 1.21290 0.92235 1.00474 1.00733 1.21143 0.97707 0.94917 1.02642 1.22158 0.89283 0.95439 0.87741 0.89322 1.86579 1.71977 1.25775 1.52939 1.21759 0.97425 1.00923 0.93473 1.21728 0.93772 1.01920 1.02209 1.21894 1.00530 0.99848 0.98619 0.93772 0.95092 0.92594 0.91230 0.88552 0.75973 0.92483 0.88671 0.84702 0.83572 0.84349 0.87785 0.76632 0.89138 0.93317 0.91356 0.92254 0.92887 0.93067 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 8.51 71.98 0.61 -3.83 16 2 C -0.13 -3.36 4.89 30.59 0.15 -3.21 16 3 C 0.11 3.21 1.91 44.99 0.09 3.30 16 4 H 0.08 2.55 5.61 -2.39 -0.01 2.54 16 5 N -0.71 -26.69 4.91 -442.53 -2.17 -28.87 16 6 C 0.53 23.79 5.61 87.66 0.49 24.28 16 7 O -0.58 -27.54 12.56 -3.04 -0.04 -27.58 16 8 C 0.05 2.41 2.44 -13.03 -0.03 2.38 16 9 H 0.06 3.33 7.02 -2.39 -0.02 3.31 16 10 C -0.51 -26.29 7.46 25.60 0.19 -26.10 16 11 H 0.05 2.72 7.82 -2.91 -0.02 2.70 16 12 C 0.03 1.76 5.45 84.65 0.46 2.22 16 13 N -0.91 -49.81 12.79 21.45 0.27 -49.54 16 14 Si 0.95 42.06 29.54 68.60 2.03 44.08 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 18 C -0.04 -1.74 4.30 -19.86 -0.09 -1.83 16 19 C -0.11 -4.84 8.31 22.27 0.19 -4.66 16 20 C -0.14 -5.15 10.05 22.27 0.22 -4.93 16 21 C -0.14 -4.98 10.05 22.27 0.22 -4.75 16 22 C -0.13 -4.83 10.05 22.27 0.22 -4.61 16 23 C -0.15 -6.54 9.67 22.27 0.22 -6.33 16 24 C 0.11 2.67 2.45 30.60 0.07 2.75 16 25 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 26 O -0.57 -13.59 12.30 -148.98 -1.83 -15.42 16 27 C -0.12 -2.05 2.45 -10.79 -0.03 -2.07 16 28 C -0.14 -2.24 9.05 71.98 0.65 -1.59 16 29 C -0.15 -2.71 8.85 71.98 0.64 -2.07 16 30 H 0.04 1.49 7.85 -2.39 -0.02 1.47 16 31 H 0.03 1.23 5.64 -2.39 -0.01 1.22 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.72 7.00 -2.39 -0.02 1.71 16 34 H 0.10 1.84 6.34 -2.39 -0.02 1.83 16 35 H 0.41 15.68 8.27 -92.70 -0.77 14.92 16 36 H 0.27 13.96 8.31 -92.71 -0.77 13.18 16 37 H 0.10 4.49 7.89 -2.91 -0.02 4.47 16 38 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 39 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 40 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 41 H 0.10 4.66 7.96 -2.91 -0.02 4.63 16 42 H 0.38 6.96 7.31 -74.06 -0.54 6.42 16 43 H 0.09 1.35 6.46 -2.38 -0.02 1.33 16 44 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.06 0.99 7.68 -2.39 -0.02 0.98 16 47 H 0.05 0.98 8.14 -2.38 -0.02 0.97 16 48 H 0.05 1.05 6.32 -2.39 -0.02 1.03 16 49 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -63.02 385.43 2.18 -60.84 By element: Atomic # 1 Polarization: 47.88 SS G_CDS: -0.36 Total: 47.52 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: 4.28 Total: -31.04 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -1.90 Total: -78.40 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -1.87 Total: -43.00 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -63.02 2.18 -60.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363348118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.495 kcal (2) G-P(sol) polarization free energy of solvation -63.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds