Wall clock time and date at job start Tue Mar 31 2020 12:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47068 * 2 1 4 4 H 1.08998 * 109.46948 * 55.00021 * 3 2 1 5 5 N 1.46500 * 109.47246 * 295.00314 * 3 2 1 6 6 C 1.34783 * 120.00051 * 84.99478 * 5 3 2 7 7 O 1.21282 * 119.99596 * 0.02562 * 6 5 3 8 8 C 1.50699 * 119.99746 * 179.97438 * 6 5 3 9 9 H 1.08997 * 109.47110 * 60.00469 * 8 6 5 10 10 C 1.50697 * 109.47623 * 300.00440 * 8 6 5 11 11 H 1.08003 * 119.99787 * 324.88523 * 10 8 6 12 12 C 1.37870 * 120.00314 * 144.87911 * 10 8 6 13 13 N 1.31516 * 119.99832 * 5.19982 * 12 10 8 14 14 Si 1.86802 * 120.00199 * 185.19298 * 12 10 8 15 15 H 1.48501 * 109.46944 * 60.00252 * 14 12 10 16 16 H 1.48504 * 109.47148 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47353 * 300.00075 * 14 12 10 18 18 C 1.50701 * 109.46920 * 180.02562 * 8 6 5 19 19 C 1.38235 * 120.00172 * 66.01260 * 18 8 6 20 20 C 1.38236 * 119.99977 * 179.78719 * 19 18 8 21 21 C 1.38228 * 119.99840 * 0.44583 * 20 19 18 22 22 C 1.38234 * 120.00231 * 359.80659 * 21 20 19 23 23 C 1.38227 * 120.00141 * 359.97438 * 22 21 20 24 24 C 1.52994 * 109.47065 * 175.00178 * 3 2 1 25 25 H 1.09008 * 109.46874 * 174.99880 * 24 3 2 26 26 O 1.42898 * 109.47463 * 55.00156 * 24 3 2 27 27 C 1.53002 * 109.47294 * 294.99912 * 24 3 2 28 28 C 1.52997 * 109.47141 * 180.02562 * 27 24 3 29 29 C 1.53000 * 109.47041 * 300.00037 * 27 24 3 30 30 H 1.09008 * 109.46672 * 299.99672 * 1 2 3 31 31 H 1.08994 * 109.47259 * 59.99452 * 1 2 3 32 32 H 1.08999 * 109.47011 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47299 * 240.00359 * 2 1 3 34 34 H 1.08996 * 109.47155 * 119.99772 * 2 1 3 35 35 H 0.96997 * 120.00216 * 265.00496 * 5 3 2 36 36 H 0.97000 * 120.00079 * 180.02562 * 13 12 10 37 37 H 1.08005 * 119.99730 * 359.97438 * 19 18 8 38 38 H 1.07996 * 119.99669 * 180.27174 * 20 19 18 39 39 H 1.08006 * 120.00248 * 179.83400 * 21 20 19 40 40 H 1.08009 * 119.99778 * 179.97438 * 22 21 20 41 41 H 1.07999 * 120.00420 * 179.97438 * 23 22 21 42 42 H 0.96696 * 114.00015 * 299.99927 * 26 24 3 43 43 H 1.08998 * 109.46803 * 59.99773 * 27 24 3 44 44 H 1.08998 * 109.47737 * 60.00002 * 28 27 24 45 45 H 1.08998 * 109.46930 * 180.02562 * 28 27 24 46 46 H 1.09000 * 109.46724 * 299.99620 * 28 27 24 47 47 H 1.08997 * 109.47704 * 300.00016 * 29 27 24 48 48 H 1.09005 * 109.46898 * 60.00259 * 29 27 24 49 49 H 1.09004 * 109.47274 * 179.97438 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6524 2.0976 -1.2518 6 6 0.4350 2.6644 -1.3669 7 8 -0.3393 2.6326 -0.4340 8 6 0.0365 3.3387 -2.6544 9 1 0.0679 2.6147 -3.4685 10 6 0.9924 4.4662 -2.9478 11 1 1.4060 5.0482 -2.1374 12 6 1.3390 4.7548 -4.2506 13 7 0.7587 4.1151 -5.2425 14 14 2.6325 6.0544 -4.6071 15 1 3.9166 5.6617 -3.9729 16 1 2.8215 6.1752 -6.0751 17 1 2.1875 7.3599 -4.0567 18 6 -1.3610 3.8870 -2.5226 19 6 -1.6191 4.9160 -1.6364 20 6 -2.9002 5.4218 -1.5188 21 6 -3.9249 4.8925 -2.2807 22 6 -3.6678 3.8600 -3.1631 23 6 -2.3860 3.3571 -3.2841 24 6 3.5648 1.4444 0.1257 25 1 3.9355 2.4656 0.0365 26 8 4.1293 0.6405 -0.9122 27 6 3.9650 0.8736 1.4877 28 6 5.4898 0.8760 1.6136 29 6 3.3607 1.7343 2.5989 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2718 2.1232 -1.9978 36 1 1.0028 4.3179 -6.1591 37 1 -0.8193 5.3267 -1.0381 38 1 -3.1010 6.2287 -0.8296 39 1 -4.9264 5.2859 -2.1869 40 1 -4.4687 3.4461 -3.7581 41 1 -2.1851 2.5502 -3.9732 42 1 3.8427 -0.2828 -0.8944 43 1 3.5943 -0.1475 1.5768 44 1 5.8602 1.8973 1.5246 45 1 5.7749 0.4690 2.5837 46 1 5.9206 0.2630 0.8219 47 1 3.7313 2.7555 2.5098 48 1 2.2743 1.7330 2.5093 49 1 3.6454 1.3275 3.5692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363348127.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:02 Heat of formation + Delta-G solvation = -89.770249 kcal Electronic energy + Delta-G solvation = -28307.082021 eV Core-core repulsion = 24618.958092 eV Total energy + Delta-G solvation = -3688.123929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.82694 -38.57224 -37.45590 -34.32232 -34.21144 -33.61209 -31.66104 -30.96562 -29.90443 -28.30119 -27.23547 -26.72607 -24.01963 -23.52853 -21.90020 -21.54490 -20.58743 -19.71741 -19.14527 -16.87282 -16.76707 -16.12135 -15.89146 -15.62419 -15.30446 -14.81973 -14.49212 -14.30340 -13.96064 -13.85065 -13.55997 -13.01968 -12.97521 -12.66400 -12.47203 -12.38354 -12.25609 -12.13769 -11.99210 -11.78788 -11.62897 -11.48641 -11.33381 -11.24495 -10.98888 -10.96986 -10.90815 -10.51153 -10.36712 -10.33298 -10.23578 -9.99278 -9.73908 -9.40051 -8.72798 -8.54828 -8.21639 -7.91133 -7.56518 -6.24181 -4.30460 2.41146 2.44093 3.23534 3.28610 3.30452 3.75051 3.95352 4.31067 4.43447 4.68681 4.79806 4.86914 4.90057 5.12380 5.15315 5.23200 5.34316 5.46156 5.54675 5.64042 5.74621 5.74789 5.78361 5.81816 5.86716 5.89817 5.94299 6.01138 6.06432 6.18378 6.22719 6.24089 6.33754 6.37223 6.49320 6.54386 6.63920 6.77578 6.89575 7.01093 7.19616 7.31279 7.40058 7.48426 7.65236 7.66543 7.79869 7.99220 8.11083 8.47782 8.73305 9.30320 9.36595 10.84081 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011016 B = 0.004871 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.115210 B = 5746.845483 C = 7274.466265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.139 4.139 3 C 0.112 3.888 4 H 0.093 0.907 5 N -0.720 5.720 6 C 0.528 3.472 7 O -0.564 6.564 8 C 0.051 3.949 9 H 0.087 0.913 10 C -0.514 4.514 11 H 0.061 0.939 12 C 0.074 3.926 13 N -0.878 5.878 14 Si 0.897 3.103 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.275 1.275 18 C -0.006 4.006 19 C -0.085 4.085 20 C -0.135 4.135 21 C -0.150 4.150 22 C -0.132 4.132 23 C -0.119 4.119 24 C 0.103 3.897 25 H 0.104 0.896 26 O -0.554 6.554 27 C -0.125 4.125 28 C -0.142 4.142 29 C -0.152 4.152 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.408 0.592 36 H 0.267 0.733 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.370 0.630 43 H 0.075 0.925 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.063 0.937 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.647 -7.215 9.649 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.177 4.177 3 C 0.006 3.994 4 H 0.111 0.889 5 N -0.372 5.372 6 C 0.318 3.682 7 O -0.443 6.443 8 C 0.030 3.970 9 H 0.104 0.896 10 C -0.552 4.552 11 H 0.079 0.921 12 C -0.131 4.131 13 N -0.513 5.513 14 Si 0.724 3.276 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.007 4.007 19 C -0.103 4.103 20 C -0.153 4.153 21 C -0.168 4.168 22 C -0.150 4.150 23 C -0.137 4.137 24 C 0.044 3.956 25 H 0.122 0.878 26 O -0.360 6.360 27 C -0.144 4.144 28 C -0.199 4.199 29 C -0.209 4.209 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.244 0.756 36 H 0.077 0.923 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.218 0.782 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.082 0.918 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.378 -6.683 9.933 12.439 hybrid contribution 0.639 0.332 -0.535 0.897 sum 4.017 -6.351 9.398 12.033 Atomic orbital electron populations 1.21751 0.94445 0.99879 1.03739 1.22006 0.97870 0.96660 1.01169 1.21607 0.94153 0.93613 0.90030 0.88939 1.45904 1.17808 1.57999 1.15509 1.21564 0.80146 0.75639 0.90834 1.90579 1.51777 1.60107 1.41868 1.18101 0.90290 0.97242 0.91408 0.89562 1.20625 1.25967 1.15999 0.92574 0.92092 1.24957 0.95888 0.96063 0.96151 1.69907 1.40785 1.41225 0.99397 0.86567 0.81851 0.81913 0.77275 1.19861 1.21127 1.20066 1.20020 0.94879 0.93632 0.92177 1.20801 0.95466 0.96139 0.97873 1.20939 0.93726 1.00358 1.00272 1.20779 0.98101 0.98824 0.99106 1.20891 0.96593 0.98050 0.99492 1.20977 0.92397 1.00383 0.99921 1.22303 0.91456 0.95735 0.86118 0.87785 1.86609 1.72072 1.24620 1.52672 1.21813 0.96780 1.00391 0.95430 1.21753 0.94662 1.02208 1.01320 1.21895 1.01415 0.99940 0.97674 0.92389 0.91651 0.94293 0.91993 0.91821 0.75644 0.92340 0.87235 0.87710 0.87808 0.87654 0.87134 0.78235 0.90670 0.92679 0.93011 0.92049 0.92359 0.91819 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.52 37.16 0.32 -1.85 16 2 C -0.14 -1.77 4.89 -26.73 -0.13 -1.90 16 3 C 0.11 1.62 1.91 -67.93 -0.13 1.49 16 4 H 0.09 1.48 5.61 -51.93 -0.29 1.19 16 5 N -0.72 -12.93 4.91 -53.81 -0.26 -13.19 16 6 C 0.53 11.27 5.61 -10.98 -0.06 11.21 16 7 O -0.56 -12.79 12.55 5.56 0.07 -12.72 16 8 C 0.05 1.19 2.38 -94.08 -0.22 0.97 16 9 H 0.09 2.18 7.13 -51.93 -0.37 1.81 16 10 C -0.51 -12.87 7.47 -34.44 -0.26 -13.13 16 11 H 0.06 1.55 7.82 -52.48 -0.41 1.14 16 12 C 0.07 1.90 5.45 -17.82 -0.10 1.80 16 13 N -0.88 -23.37 12.84 55.43 0.71 -22.66 16 14 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 18 C -0.01 -0.14 4.30 -104.62 -0.45 -0.59 16 19 C -0.08 -1.91 8.30 -39.58 -0.33 -2.24 16 20 C -0.13 -2.69 10.05 -39.59 -0.40 -3.09 16 21 C -0.15 -2.83 10.05 -39.59 -0.40 -3.23 16 22 C -0.13 -2.59 10.05 -39.59 -0.40 -2.99 16 23 C -0.12 -2.61 9.67 -39.58 -0.38 -3.00 16 24 C 0.10 1.28 2.45 -26.73 -0.07 1.21 16 25 H 0.10 1.44 8.14 -51.92 -0.42 1.02 16 26 O -0.55 -6.91 12.30 -35.23 -0.43 -7.34 16 27 C -0.12 -1.24 2.45 -90.62 -0.22 -1.46 16 28 C -0.14 -1.33 9.05 37.16 0.34 -0.99 16 29 C -0.15 -1.51 8.85 37.16 0.33 -1.18 16 30 H 0.06 0.95 7.85 -51.92 -0.41 0.54 16 31 H 0.06 1.21 5.64 -51.93 -0.29 0.92 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.75 7.00 -51.93 -0.36 0.39 16 34 H 0.06 0.67 6.34 -51.93 -0.33 0.34 16 35 H 0.41 7.51 8.27 -40.82 -0.34 7.18 16 36 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 37 H 0.11 2.50 7.89 -52.48 -0.41 2.09 16 38 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 39 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 40 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 41 H 0.11 2.36 7.96 -52.49 -0.42 1.94 16 42 H 0.37 3.54 7.31 45.56 0.33 3.87 16 43 H 0.08 0.68 6.46 -51.93 -0.34 0.34 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.59 7.68 -51.93 -0.40 0.19 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.69 6.32 -51.93 -0.33 0.37 16 49 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 385.53 15.07 5.81 5.81 Total: -1.00 -28.28 385.53 -8.99 -37.27 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -7.30 Total: 16.64 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -2.56 Total: -18.96 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.45 Total: -35.85 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.36 Total: -20.06 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.28 -8.99 -37.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363348127.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.500 kcal (2) G-P(sol) polarization free energy of solvation -28.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds