Wall clock time and date at job start Tue Mar 31 2020 12:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47068 * 2 1 4 4 H 1.08998 * 109.46948 * 55.00021 * 3 2 1 5 5 N 1.46500 * 109.47246 * 295.00314 * 3 2 1 6 6 C 1.34783 * 120.00051 * 84.99478 * 5 3 2 7 7 O 1.21282 * 119.99596 * 0.02562 * 6 5 3 8 8 C 1.50699 * 119.99746 * 179.97438 * 6 5 3 9 9 H 1.08997 * 109.47110 * 60.00469 * 8 6 5 10 10 C 1.50697 * 109.47623 * 300.00440 * 8 6 5 11 11 H 1.08003 * 119.99787 * 324.88523 * 10 8 6 12 12 C 1.37870 * 120.00314 * 144.87911 * 10 8 6 13 13 N 1.31516 * 119.99832 * 5.19982 * 12 10 8 14 14 Si 1.86802 * 120.00199 * 185.19298 * 12 10 8 15 15 H 1.48501 * 109.46944 * 60.00252 * 14 12 10 16 16 H 1.48504 * 109.47148 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47353 * 300.00075 * 14 12 10 18 18 C 1.50701 * 109.46920 * 180.02562 * 8 6 5 19 19 C 1.38235 * 120.00172 * 66.01260 * 18 8 6 20 20 C 1.38236 * 119.99977 * 179.78719 * 19 18 8 21 21 C 1.38228 * 119.99840 * 0.44583 * 20 19 18 22 22 C 1.38234 * 120.00231 * 359.80659 * 21 20 19 23 23 C 1.38227 * 120.00141 * 359.97438 * 22 21 20 24 24 C 1.52994 * 109.47065 * 175.00178 * 3 2 1 25 25 H 1.09008 * 109.46874 * 174.99880 * 24 3 2 26 26 O 1.42898 * 109.47463 * 55.00156 * 24 3 2 27 27 C 1.53002 * 109.47294 * 294.99912 * 24 3 2 28 28 C 1.52997 * 109.47141 * 180.02562 * 27 24 3 29 29 C 1.53000 * 109.47041 * 300.00037 * 27 24 3 30 30 H 1.09008 * 109.46672 * 299.99672 * 1 2 3 31 31 H 1.08994 * 109.47259 * 59.99452 * 1 2 3 32 32 H 1.08999 * 109.47011 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47299 * 240.00359 * 2 1 3 34 34 H 1.08996 * 109.47155 * 119.99772 * 2 1 3 35 35 H 0.96997 * 120.00216 * 265.00496 * 5 3 2 36 36 H 0.97000 * 120.00079 * 180.02562 * 13 12 10 37 37 H 1.08005 * 119.99730 * 359.97438 * 19 18 8 38 38 H 1.07996 * 119.99669 * 180.27174 * 20 19 18 39 39 H 1.08006 * 120.00248 * 179.83400 * 21 20 19 40 40 H 1.08009 * 119.99778 * 179.97438 * 22 21 20 41 41 H 1.07999 * 120.00420 * 179.97438 * 23 22 21 42 42 H 0.96696 * 114.00015 * 299.99927 * 26 24 3 43 43 H 1.08998 * 109.46803 * 59.99773 * 27 24 3 44 44 H 1.08998 * 109.47737 * 60.00002 * 28 27 24 45 45 H 1.08998 * 109.46930 * 180.02562 * 28 27 24 46 46 H 1.09000 * 109.46724 * 299.99620 * 28 27 24 47 47 H 1.08997 * 109.47704 * 300.00016 * 29 27 24 48 48 H 1.09005 * 109.46898 * 60.00259 * 29 27 24 49 49 H 1.09004 * 109.47274 * 179.97438 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6524 2.0976 -1.2518 6 6 0.4350 2.6644 -1.3669 7 8 -0.3393 2.6326 -0.4340 8 6 0.0365 3.3387 -2.6544 9 1 0.0679 2.6147 -3.4685 10 6 0.9924 4.4662 -2.9478 11 1 1.4060 5.0482 -2.1374 12 6 1.3390 4.7548 -4.2506 13 7 0.7587 4.1151 -5.2425 14 14 2.6325 6.0544 -4.6071 15 1 3.9166 5.6617 -3.9729 16 1 2.8215 6.1752 -6.0751 17 1 2.1875 7.3599 -4.0567 18 6 -1.3610 3.8870 -2.5226 19 6 -1.6191 4.9160 -1.6364 20 6 -2.9002 5.4218 -1.5188 21 6 -3.9249 4.8925 -2.2807 22 6 -3.6678 3.8600 -3.1631 23 6 -2.3860 3.3571 -3.2841 24 6 3.5648 1.4444 0.1257 25 1 3.9355 2.4656 0.0365 26 8 4.1293 0.6405 -0.9122 27 6 3.9650 0.8736 1.4877 28 6 5.4898 0.8760 1.6136 29 6 3.3607 1.7343 2.5989 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2718 2.1232 -1.9978 36 1 1.0028 4.3179 -6.1591 37 1 -0.8193 5.3267 -1.0381 38 1 -3.1010 6.2287 -0.8296 39 1 -4.9264 5.2859 -2.1869 40 1 -4.4687 3.4461 -3.7581 41 1 -2.1851 2.5502 -3.9732 42 1 3.8427 -0.2828 -0.8944 43 1 3.5943 -0.1475 1.5768 44 1 5.8602 1.8973 1.5246 45 1 5.7749 0.4690 2.5837 46 1 5.9206 0.2630 0.8219 47 1 3.7313 2.7555 2.5098 48 1 2.2743 1.7330 2.5093 49 1 3.6454 1.3275 3.5692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363348127.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:01 Heat of formation + Delta-G solvation = -106.481861 kcal Electronic energy + Delta-G solvation = -28307.806690 eV Core-core repulsion = 24618.958092 eV Total energy + Delta-G solvation = -3688.848599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.23292 -39.99122 -38.93386 -35.63986 -35.46229 -35.11756 -33.16900 -32.63397 -31.53277 -29.61293 -28.63235 -27.72277 -25.79545 -24.72795 -23.27187 -23.07955 -21.96251 -20.96729 -20.59900 -18.68449 -18.07133 -17.61462 -17.40599 -16.85865 -16.52623 -16.40457 -15.96580 -15.68989 -15.49651 -15.26220 -14.68202 -14.58838 -14.29020 -14.03247 -13.89989 -13.75763 -13.48074 -13.32568 -13.27555 -13.08316 -12.99458 -12.83562 -12.74837 -12.71133 -12.44223 -12.23962 -12.16157 -11.95057 -11.81833 -11.67646 -11.61543 -11.31841 -11.26071 -10.79956 -10.66537 -10.28346 -9.70178 -9.55112 -9.23983 -8.20885 -6.32209 0.76016 0.81631 1.42398 1.42841 1.50120 2.04422 2.43056 2.55941 3.08518 3.27393 3.46725 3.67783 3.82415 3.96721 4.12562 4.21537 4.22896 4.29939 4.33107 4.40404 4.45346 4.52879 4.62398 4.66370 4.72260 4.82221 4.86325 4.89437 4.97926 4.98619 5.02061 5.03509 5.10874 5.11990 5.21673 5.25402 5.37891 5.44917 5.45533 5.46273 5.50994 5.64397 5.78548 5.80769 5.86867 5.97057 6.25183 6.41207 6.72841 6.81625 6.87489 7.34947 7.65851 8.86894 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011016 B = 0.004871 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.115210 B = 5746.845483 C = 7274.466265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.110 3.890 4 H 0.077 0.923 5 N -0.713 5.713 6 C 0.530 3.470 7 O -0.581 6.581 8 C 0.052 3.948 9 H 0.060 0.940 10 C -0.515 4.515 11 H 0.051 0.949 12 C 0.033 3.967 13 N -0.905 5.905 14 Si 0.951 3.049 15 H -0.265 1.265 16 H -0.283 1.283 17 H -0.278 1.278 18 C -0.032 4.032 19 C -0.110 4.110 20 C -0.135 4.135 21 C -0.145 4.145 22 C -0.130 4.130 23 C -0.143 4.143 24 C 0.113 3.887 25 H 0.085 0.915 26 O -0.565 6.565 27 C -0.116 4.116 28 C -0.139 4.139 29 C -0.152 4.152 30 H 0.042 0.958 31 H 0.027 0.973 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.405 0.595 36 H 0.266 0.734 37 H 0.094 0.906 38 H 0.135 0.865 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.104 0.896 42 H 0.384 0.616 43 H 0.093 0.907 44 H 0.045 0.955 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.049 0.951 48 H 0.050 0.950 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.666 -7.732 10.780 13.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.169 4.169 3 C 0.006 3.994 4 H 0.095 0.905 5 N -0.363 5.363 6 C 0.319 3.681 7 O -0.462 6.462 8 C 0.031 3.969 9 H 0.078 0.922 10 C -0.553 4.553 11 H 0.069 0.931 12 C -0.168 4.168 13 N -0.542 5.542 14 Si 0.777 3.223 15 H -0.190 1.190 16 H -0.208 1.208 17 H -0.203 1.203 18 C -0.033 4.033 19 C -0.128 4.128 20 C -0.153 4.153 21 C -0.162 4.162 22 C -0.147 4.147 23 C -0.162 4.162 24 C 0.053 3.947 25 H 0.103 0.897 26 O -0.372 6.372 27 C -0.135 4.135 28 C -0.197 4.197 29 C -0.209 4.209 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.240 0.760 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.153 0.847 39 H 0.164 0.836 40 H 0.156 0.844 41 H 0.122 0.878 42 H 0.234 0.766 43 H 0.111 0.889 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.422 -7.224 11.081 13.663 hybrid contribution 0.559 0.466 -0.851 1.120 sum 3.981 -6.758 10.230 12.891 Atomic orbital electron populations 1.21677 0.96335 1.00365 1.01098 1.21973 0.95982 0.95593 1.03349 1.21836 0.95847 0.94225 0.87538 0.90454 1.45864 1.16448 1.57278 1.16719 1.21153 0.81102 0.75982 0.89899 1.90551 1.52531 1.61020 1.42070 1.17987 0.90894 0.96379 0.91683 0.92218 1.20709 1.26078 1.16152 0.92353 0.93109 1.25586 0.97512 0.97767 0.95982 1.70014 1.42069 1.42619 0.99523 0.85709 0.80013 0.79507 0.77083 1.18975 1.20824 1.20333 1.20100 0.95084 0.94652 0.93477 1.20819 0.96638 0.96897 0.98466 1.21312 0.92765 1.00663 1.00549 1.21253 0.99668 0.97768 0.97540 1.21289 0.96187 0.97774 0.99495 1.21114 0.93679 1.01054 1.00307 1.22143 0.89413 0.95325 0.87778 0.89716 1.86589 1.72015 1.25749 1.52862 1.21757 0.97384 1.00968 0.93392 1.21731 0.93833 1.01827 1.02270 1.21897 1.00549 0.99770 0.98705 0.93893 0.95384 0.92182 0.90816 0.88426 0.75994 0.92448 0.88817 0.84749 0.83586 0.84364 0.87832 0.76583 0.88861 0.93550 0.91293 0.92135 0.93148 0.93049 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 8.52 71.98 0.61 -3.60 16 2 C -0.13 -3.17 4.89 30.60 0.15 -3.02 16 3 C 0.11 3.19 1.91 44.99 0.09 3.28 16 4 H 0.08 2.52 5.61 -2.39 -0.01 2.51 16 5 N -0.71 -26.62 4.91 -442.53 -2.17 -28.79 16 6 C 0.53 23.80 5.61 87.66 0.49 24.30 16 7 O -0.58 -27.61 12.55 -3.04 -0.04 -27.64 16 8 C 0.05 2.58 2.38 -13.03 -0.03 2.55 16 9 H 0.06 3.23 7.13 -2.39 -0.02 3.22 16 10 C -0.52 -26.90 7.47 25.60 0.19 -26.71 16 11 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 12 C 0.03 1.75 5.45 84.65 0.46 2.21 16 13 N -0.91 -49.77 12.84 21.44 0.28 -49.50 16 14 Si 0.95 42.08 29.54 68.60 2.03 44.11 16 15 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 C -0.03 -1.57 4.30 -19.86 -0.09 -1.65 16 19 C -0.11 -5.09 8.30 22.27 0.18 -4.90 16 20 C -0.14 -5.22 10.05 22.27 0.22 -5.00 16 21 C -0.14 -5.07 10.05 22.27 0.22 -4.85 16 22 C -0.13 -4.89 10.05 22.27 0.22 -4.67 16 23 C -0.14 -6.48 9.67 22.27 0.22 -6.27 16 24 C 0.11 2.71 2.45 30.59 0.07 2.79 16 25 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 26 O -0.56 -13.34 12.30 -148.98 -1.83 -15.17 16 27 C -0.12 -2.06 2.45 -10.79 -0.03 -2.09 16 28 C -0.14 -2.30 9.05 71.98 0.65 -1.65 16 29 C -0.15 -2.81 8.85 71.98 0.64 -2.17 16 30 H 0.04 1.42 7.85 -2.38 -0.02 1.40 16 31 H 0.03 1.05 5.64 -2.39 -0.01 1.04 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.64 7.00 -2.39 -0.02 1.63 16 34 H 0.10 1.75 6.34 -2.39 -0.02 1.74 16 35 H 0.41 15.54 8.27 -92.71 -0.77 14.78 16 36 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 37 H 0.09 4.50 7.89 -2.91 -0.02 4.48 16 38 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 39 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 40 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 41 H 0.10 4.67 7.96 -2.91 -0.02 4.64 16 42 H 0.38 6.48 7.31 -74.06 -0.54 5.94 16 43 H 0.09 1.35 6.46 -2.39 -0.02 1.34 16 44 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.06 1.02 7.68 -2.39 -0.02 1.00 16 47 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.05 1.08 6.32 -2.38 -0.02 1.07 16 49 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -63.72 385.53 2.18 -61.53 By element: Atomic # 1 Polarization: 47.28 SS G_CDS: -0.36 Total: 46.92 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: 4.28 Total: -31.46 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -1.90 Total: -78.29 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -1.87 Total: -42.81 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -63.72 2.18 -61.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363348127.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.950 kcal (2) G-P(sol) polarization free energy of solvation -63.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds