Wall clock time and date at job start Tue Mar 31 2020 12:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47139 * 2 1 4 4 N 1.46501 * 109.47198 * 184.93517 * 3 2 1 5 5 C 1.46505 * 119.99911 * 266.88136 * 4 3 2 6 6 C 1.53004 * 109.46606 * 269.99260 * 5 4 3 7 7 C 1.53006 * 109.47029 * 60.00514 * 6 5 4 8 8 C 1.52996 * 109.46742 * 179.97438 * 6 5 4 9 9 O 1.42891 * 109.47374 * 300.00251 * 6 5 4 10 10 C 1.34777 * 119.99946 * 86.87654 * 4 3 2 11 11 O 1.21277 * 119.99772 * 184.67269 * 10 4 3 12 12 C 1.50698 * 119.99896 * 4.66554 * 10 4 3 13 13 H 1.09003 * 109.47125 * 29.59522 * 12 10 4 14 14 C 1.50700 * 109.47307 * 269.58978 * 12 10 4 15 15 H 1.07998 * 119.99726 * 116.69192 * 14 12 10 16 16 C 1.37872 * 119.99841 * 296.41523 * 14 12 10 17 17 N 1.31511 * 120.00336 * 5.57786 * 16 14 12 18 18 Si 1.86806 * 119.99741 * 185.57986 * 16 14 12 19 19 H 1.48498 * 109.47094 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47145 * 120.00143 * 18 16 14 21 21 H 1.48498 * 109.46982 * 239.99828 * 18 16 14 22 22 C 1.50701 * 109.46929 * 149.58970 * 12 10 4 23 23 C 1.38239 * 119.99802 * 322.36299 * 22 12 10 24 24 C 1.38246 * 119.99525 * 179.80725 * 23 22 12 25 25 C 1.38223 * 120.00152 * 0.39640 * 24 23 22 26 26 C 1.38242 * 120.00338 * 359.85803 * 25 24 23 27 27 C 1.38235 * 119.99751 * 359.95219 * 26 25 24 28 28 H 1.08996 * 109.47434 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46808 * 300.00312 * 1 2 3 30 30 H 1.09001 * 109.47091 * 59.99538 * 1 2 3 31 31 H 1.09004 * 109.46495 * 240.00080 * 2 1 3 32 32 H 1.08992 * 109.47033 * 120.00538 * 2 1 3 33 33 H 1.09002 * 109.46972 * 64.93890 * 3 2 1 34 34 H 1.09003 * 109.47599 * 304.93807 * 3 2 1 35 35 H 1.08994 * 109.46871 * 29.99576 * 5 4 3 36 36 H 1.08995 * 109.46904 * 150.00138 * 5 4 3 37 37 H 1.09000 * 109.47138 * 59.99378 * 7 6 5 38 38 H 1.08999 * 109.47272 * 179.97438 * 7 6 5 39 39 H 1.08999 * 109.46949 * 299.99626 * 7 6 5 40 40 H 1.08999 * 109.47226 * 60.00669 * 8 6 5 41 41 H 1.08999 * 109.47358 * 180.02562 * 8 6 5 42 42 H 1.09003 * 109.47317 * 299.99998 * 8 6 5 43 43 H 0.96705 * 114.00085 * 299.99859 * 9 6 5 44 44 H 0.97006 * 120.00143 * 180.02562 * 17 16 14 45 45 H 1.07999 * 120.00251 * 359.97438 * 23 22 12 46 46 H 1.07999 * 119.99422 * 180.23202 * 24 23 22 47 47 H 1.08000 * 120.00441 * 179.82978 * 25 24 23 48 48 H 1.07993 * 120.00286 * 179.97438 * 26 25 24 49 49 H 1.07999 * 120.00392 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5002 1.4442 -0.1188 5 6 4.3332 1.4777 1.0859 6 6 4.6185 2.9315 1.4683 7 6 3.2985 3.6557 1.7405 8 6 5.4878 2.9665 2.7268 9 8 5.3053 3.5800 0.3961 10 6 4.0773 1.4148 -1.3365 11 8 5.2832 1.3307 -1.4341 12 6 3.2240 1.4864 -2.5765 13 1 2.3201 2.0569 -2.3632 14 6 2.8481 0.0925 -3.0089 15 1 1.8115 -0.2103 -3.0132 16 6 3.8271 -0.7941 -3.4043 17 7 5.0955 -0.4625 -3.3007 18 14 3.3518 -2.4666 -4.0873 19 1 1.8723 -2.5940 -4.0996 20 1 3.8723 -2.6021 -5.4715 21 1 3.9329 -3.5334 -3.2333 22 6 3.9965 2.1632 -3.6794 23 6 4.8323 3.2248 -3.3869 24 6 5.5440 3.8431 -4.3981 25 6 5.4135 3.4052 -5.7026 26 6 4.5737 2.3470 -5.9958 27 6 3.8651 1.7262 -4.9842 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.7507 1.9301 0.9309 34 1 1.6063 1.9813 -0.8424 35 1 3.8092 0.9830 1.9037 36 1 5.2735 0.9618 0.8920 37 1 2.7746 3.1610 2.5584 38 1 3.5017 4.6912 2.0133 39 1 2.6788 3.6307 0.8442 40 1 6.4282 2.4505 2.5333 41 1 5.6908 4.0022 2.9995 42 1 4.9635 2.4720 3.5445 43 1 6.1526 3.1732 0.1686 44 1 5.7842 -1.0862 -3.5793 45 1 4.9314 3.5694 -2.3681 46 1 6.1998 4.6700 -4.1690 47 1 5.9674 3.8899 -6.4929 48 1 4.4715 2.0051 -7.0151 49 1 3.2093 0.8992 -5.2132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411883774.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:22 Heat of formation + Delta-G solvation = -61.764247 kcal Electronic energy + Delta-G solvation = -29531.303272 eV Core-core repulsion = 25844.393775 eV Total energy + Delta-G solvation = -3686.909497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.47836 -38.08970 -36.85379 -35.09132 -33.50013 -32.46471 -31.36688 -30.73405 -29.63340 -27.66290 -27.34173 -26.30980 -24.90790 -23.43697 -21.33859 -21.10669 -20.53841 -19.93691 -18.17527 -16.76359 -16.29805 -15.94075 -15.41377 -15.08449 -14.83798 -14.54068 -14.41890 -13.97693 -13.79036 -13.57952 -13.19134 -12.65001 -12.58261 -12.35659 -12.32616 -12.23840 -12.09415 -11.99189 -11.81462 -11.61812 -11.44693 -11.35725 -11.20373 -10.97037 -10.92989 -10.70395 -10.64134 -10.42317 -10.38029 -10.07369 -9.95648 -9.77035 -9.49536 -9.27155 -8.60147 -8.06944 -7.67562 -7.52189 -7.29217 -5.95433 -4.14730 2.60974 2.65501 3.24317 3.34978 3.35237 3.97484 4.25498 4.43401 4.64878 5.04461 5.06046 5.15857 5.25352 5.27465 5.44367 5.54073 5.61776 5.68035 5.80972 5.83626 5.86766 5.89992 5.98385 5.99422 6.05876 6.12727 6.13424 6.21154 6.23799 6.29414 6.38474 6.43927 6.48189 6.60329 6.68672 6.74603 6.85280 6.93412 7.07874 7.22512 7.25244 7.56221 7.61201 7.69090 7.78613 7.88626 8.14207 8.22421 8.32782 8.58158 8.87851 9.48489 9.85138 10.98794 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010494 B = 0.006733 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.431247 B = 4157.464464 C = 5684.213013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.155 4.155 3 C 0.122 3.878 4 N -0.622 5.622 5 C 0.096 3.904 6 C 0.111 3.889 7 C -0.137 4.137 8 C -0.175 4.175 9 O -0.551 6.551 10 C 0.540 3.460 11 O -0.510 6.510 12 C 0.064 3.936 13 H 0.049 0.951 14 C -0.537 4.537 15 H 0.066 0.934 16 C 0.075 3.925 17 N -0.814 5.814 18 Si 0.875 3.125 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.286 1.286 22 C -0.001 4.001 23 C -0.109 4.109 24 C -0.138 4.138 25 C -0.149 4.149 26 C -0.143 4.143 27 C -0.075 4.075 28 H 0.048 0.952 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.379 0.621 44 H 0.259 0.741 45 H 0.110 0.890 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.100 0.900 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.300 5.336 8.073 10.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.194 4.194 3 C -0.002 4.002 4 N -0.358 5.358 5 C -0.029 4.029 6 C 0.069 3.931 7 C -0.194 4.194 8 C -0.233 4.233 9 O -0.358 6.358 10 C 0.330 3.670 11 O -0.382 6.382 12 C 0.043 3.957 13 H 0.066 0.934 14 C -0.575 4.575 15 H 0.084 0.916 16 C -0.134 4.134 17 N -0.445 5.445 18 Si 0.702 3.298 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.212 1.212 22 C -0.002 4.002 23 C -0.128 4.128 24 C -0.156 4.156 25 C -0.167 4.167 26 C -0.162 4.162 27 C -0.093 4.093 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.227 0.773 44 H 0.070 0.930 45 H 0.128 0.872 46 H 0.118 0.882 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.906 5.612 7.974 10.504 hybrid contribution 0.486 -1.672 -0.198 1.752 sum -3.420 3.940 7.776 9.364 Atomic orbital electron populations 1.21657 0.96430 1.01079 1.01006 1.22159 0.94927 0.98307 1.03976 1.21488 0.81078 0.96463 1.01153 1.47955 1.05231 1.77191 1.05409 1.21846 0.97235 0.95297 0.88494 1.21606 0.92359 0.92893 0.86239 1.21788 0.95840 0.99913 1.01862 1.22446 1.00336 1.02233 0.98318 1.86475 1.38186 1.57602 1.53507 1.21273 0.89014 0.73277 0.83388 1.90552 1.15142 1.46908 1.85576 1.17912 0.92565 0.96854 0.88382 0.93363 1.20561 0.93465 0.95451 1.48012 0.91627 1.25073 0.95164 0.97853 0.95355 1.70251 0.98628 1.34498 1.41124 0.86804 0.78861 0.85000 0.79123 1.19539 1.20801 1.21222 1.19816 0.94234 0.91409 0.94728 1.21005 0.97051 0.96554 0.98150 1.20800 1.00825 1.00589 0.93366 1.20735 1.00985 0.99013 0.95990 1.20953 0.99245 0.97576 0.98384 1.21032 0.98410 0.97640 0.92196 0.93264 0.93800 0.92584 0.88171 0.93403 0.92278 0.90659 0.91680 0.90373 0.91951 0.92696 0.91161 0.92397 0.92104 0.92034 0.77292 0.93024 0.87216 0.88229 0.88333 0.88167 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.91 37.16 0.37 -1.52 16 2 C -0.16 -2.47 6.24 -26.73 -0.17 -2.64 16 3 C 0.12 1.93 4.05 -4.04 -0.02 1.92 16 4 N -0.62 -11.51 2.15 -173.69 -0.37 -11.88 16 5 C 0.10 1.54 4.71 -4.04 -0.02 1.53 16 6 C 0.11 1.59 1.17 -90.62 -0.11 1.48 16 7 C -0.14 -1.76 7.60 37.16 0.28 -1.48 16 8 C -0.18 -2.02 8.81 37.16 0.33 -1.70 16 9 O -0.55 -9.40 11.89 -37.51 -0.45 -9.85 16 10 C 0.54 12.21 4.83 -10.99 -0.05 12.15 16 11 O -0.51 -13.05 12.08 3.28 0.04 -13.01 16 12 C 0.06 1.48 2.19 -94.08 -0.21 1.28 16 13 H 0.05 1.05 5.95 -51.93 -0.31 0.74 16 14 C -0.54 -13.07 5.48 -34.44 -0.19 -13.26 16 15 H 0.07 1.56 7.49 -52.49 -0.39 1.17 16 16 C 0.08 1.93 4.05 -17.82 -0.07 1.86 16 17 N -0.81 -22.44 9.91 55.43 0.55 -21.90 16 18 Si 0.87 20.14 29.54 -169.99 -5.02 15.11 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 C 0.00 -0.02 4.19 -104.62 -0.44 -0.46 16 23 C -0.11 -2.49 8.45 -39.58 -0.33 -2.83 16 24 C -0.14 -2.86 10.05 -39.58 -0.40 -3.26 16 25 C -0.15 -2.98 10.05 -39.59 -0.40 -3.38 16 26 C -0.14 -3.01 10.05 -39.58 -0.40 -3.41 16 27 C -0.07 -1.74 8.20 -39.58 -0.32 -2.06 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 1.97 5.67 -51.93 -0.29 1.68 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.78 6.19 -51.93 -0.32 0.46 16 34 H 0.08 1.24 5.84 -51.93 -0.30 0.94 16 35 H 0.06 0.91 8.07 -51.93 -0.42 0.49 16 36 H 0.08 1.43 7.36 -51.93 -0.38 1.05 16 37 H 0.06 0.67 8.07 -51.93 -0.42 0.25 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.00 6.04 -51.93 -0.31 0.69 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.38 6.36 8.61 45.56 0.39 6.75 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.11 2.52 7.07 -52.49 -0.37 2.15 16 46 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 47 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 48 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 49 H 0.12 2.92 6.43 -52.49 -0.34 2.58 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -29.20 377.32 -8.96 -38.16 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -7.26 Total: 13.46 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -2.14 Total: -15.78 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.17 Total: -33.78 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.41 Total: -22.86 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.20 -8.96 -38.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411883774.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.603 kcal (2) G-P(sol) polarization free energy of solvation -29.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds