Wall clock time and date at job start Tue Mar 31 2020 12:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47139 * 2 1 4 4 N 1.46501 * 109.47198 * 184.93517 * 3 2 1 5 5 C 1.46505 * 119.99911 * 266.88136 * 4 3 2 6 6 C 1.53004 * 109.46606 * 269.99260 * 5 4 3 7 7 C 1.53006 * 109.47029 * 60.00514 * 6 5 4 8 8 C 1.52996 * 109.46742 * 179.97438 * 6 5 4 9 9 O 1.42891 * 109.47374 * 300.00251 * 6 5 4 10 10 C 1.34777 * 119.99946 * 86.87654 * 4 3 2 11 11 O 1.21277 * 119.99772 * 184.67269 * 10 4 3 12 12 C 1.50698 * 119.99896 * 4.66554 * 10 4 3 13 13 H 1.09003 * 109.47125 * 29.59522 * 12 10 4 14 14 C 1.50700 * 109.47307 * 269.58978 * 12 10 4 15 15 H 1.07998 * 119.99726 * 116.69192 * 14 12 10 16 16 C 1.37872 * 119.99841 * 296.41523 * 14 12 10 17 17 N 1.31511 * 120.00336 * 5.57786 * 16 14 12 18 18 Si 1.86806 * 119.99741 * 185.57986 * 16 14 12 19 19 H 1.48498 * 109.47094 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47145 * 120.00143 * 18 16 14 21 21 H 1.48498 * 109.46982 * 239.99828 * 18 16 14 22 22 C 1.50701 * 109.46929 * 149.58970 * 12 10 4 23 23 C 1.38239 * 119.99802 * 322.36299 * 22 12 10 24 24 C 1.38246 * 119.99525 * 179.80725 * 23 22 12 25 25 C 1.38223 * 120.00152 * 0.39640 * 24 23 22 26 26 C 1.38242 * 120.00338 * 359.85803 * 25 24 23 27 27 C 1.38235 * 119.99751 * 359.95219 * 26 25 24 28 28 H 1.08996 * 109.47434 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46808 * 300.00312 * 1 2 3 30 30 H 1.09001 * 109.47091 * 59.99538 * 1 2 3 31 31 H 1.09004 * 109.46495 * 240.00080 * 2 1 3 32 32 H 1.08992 * 109.47033 * 120.00538 * 2 1 3 33 33 H 1.09002 * 109.46972 * 64.93890 * 3 2 1 34 34 H 1.09003 * 109.47599 * 304.93807 * 3 2 1 35 35 H 1.08994 * 109.46871 * 29.99576 * 5 4 3 36 36 H 1.08995 * 109.46904 * 150.00138 * 5 4 3 37 37 H 1.09000 * 109.47138 * 59.99378 * 7 6 5 38 38 H 1.08999 * 109.47272 * 179.97438 * 7 6 5 39 39 H 1.08999 * 109.46949 * 299.99626 * 7 6 5 40 40 H 1.08999 * 109.47226 * 60.00669 * 8 6 5 41 41 H 1.08999 * 109.47358 * 180.02562 * 8 6 5 42 42 H 1.09003 * 109.47317 * 299.99998 * 8 6 5 43 43 H 0.96705 * 114.00085 * 299.99859 * 9 6 5 44 44 H 0.97006 * 120.00143 * 180.02562 * 17 16 14 45 45 H 1.07999 * 120.00251 * 359.97438 * 23 22 12 46 46 H 1.07999 * 119.99422 * 180.23202 * 24 23 22 47 47 H 1.08000 * 120.00441 * 179.82978 * 25 24 23 48 48 H 1.07993 * 120.00286 * 179.97438 * 26 25 24 49 49 H 1.07999 * 120.00392 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5002 1.4442 -0.1188 5 6 4.3332 1.4777 1.0859 6 6 4.6185 2.9315 1.4683 7 6 3.2985 3.6557 1.7405 8 6 5.4878 2.9665 2.7268 9 8 5.3053 3.5800 0.3961 10 6 4.0773 1.4148 -1.3365 11 8 5.2832 1.3307 -1.4341 12 6 3.2240 1.4864 -2.5765 13 1 2.3201 2.0569 -2.3632 14 6 2.8481 0.0925 -3.0089 15 1 1.8115 -0.2103 -3.0132 16 6 3.8271 -0.7941 -3.4043 17 7 5.0955 -0.4625 -3.3007 18 14 3.3518 -2.4666 -4.0873 19 1 1.8723 -2.5940 -4.0996 20 1 3.8723 -2.6021 -5.4715 21 1 3.9329 -3.5334 -3.2333 22 6 3.9965 2.1632 -3.6794 23 6 4.8323 3.2248 -3.3869 24 6 5.5440 3.8431 -4.3981 25 6 5.4135 3.4052 -5.7026 26 6 4.5737 2.3470 -5.9958 27 6 3.8651 1.7262 -4.9842 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.7507 1.9301 0.9309 34 1 1.6063 1.9813 -0.8424 35 1 3.8092 0.9830 1.9037 36 1 5.2735 0.9618 0.8920 37 1 2.7746 3.1610 2.5584 38 1 3.5017 4.6912 2.0133 39 1 2.6788 3.6307 0.8442 40 1 6.4282 2.4505 2.5333 41 1 5.6908 4.0022 2.9995 42 1 4.9635 2.4720 3.5445 43 1 6.1526 3.1732 0.1686 44 1 5.7842 -1.0862 -3.5793 45 1 4.9314 3.5694 -2.3681 46 1 6.1998 4.6700 -4.1690 47 1 5.9674 3.8899 -6.4929 48 1 4.4715 2.0051 -7.0151 49 1 3.2093 0.8992 -5.2132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411883774.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:21 Heat of formation + Delta-G solvation = -77.908307 kcal Electronic energy + Delta-G solvation = -29532.003331 eV Core-core repulsion = 25844.393775 eV Total energy + Delta-G solvation = -3687.609556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.03213 -39.62171 -38.31689 -36.57662 -35.32552 -33.75517 -32.72754 -32.45231 -31.33643 -29.29354 -28.41026 -27.61892 -26.40761 -25.14275 -22.97643 -22.52010 -22.03498 -21.23961 -19.79932 -18.49430 -17.67462 -17.54936 -17.09055 -16.60362 -16.44093 -15.97357 -15.69482 -15.42940 -15.31252 -15.18278 -14.64628 -14.22520 -14.10170 -13.94346 -13.80614 -13.43506 -13.41052 -13.26016 -13.05730 -13.03988 -12.84639 -12.77243 -12.61333 -12.52977 -12.41557 -12.22254 -12.15910 -11.99466 -11.70168 -11.58682 -11.46029 -11.25102 -11.08017 -10.97994 -10.54535 -9.84041 -9.37886 -9.05252 -8.98399 -7.91685 -6.12614 0.91006 0.96016 1.37274 1.43399 1.50288 2.40564 2.54599 2.67131 3.28922 3.36187 3.46581 3.93664 4.04385 4.14557 4.20246 4.32109 4.36566 4.38033 4.44951 4.53245 4.61158 4.67987 4.71335 4.73916 4.77245 4.83984 4.93017 4.97406 5.02890 5.04750 5.07357 5.14675 5.16575 5.18576 5.26814 5.32471 5.43522 5.49072 5.52044 5.57277 5.70426 5.77424 5.91959 5.98527 6.05974 6.16708 6.46693 6.55952 6.77855 6.86514 7.12079 7.51046 8.15815 9.00529 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010494 B = 0.006733 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.431247 B = 4157.464464 C = 5684.213013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.151 4.151 3 C 0.120 3.880 4 N -0.621 5.621 5 C 0.095 3.905 6 C 0.108 3.892 7 C -0.135 4.135 8 C -0.167 4.167 9 O -0.571 6.571 10 C 0.541 3.459 11 O -0.547 6.547 12 C 0.057 3.943 13 H 0.054 0.946 14 C -0.524 4.524 15 H 0.065 0.935 16 C 0.039 3.961 17 N -0.845 5.845 18 Si 0.924 3.076 19 H -0.260 1.260 20 H -0.286 1.286 21 H -0.295 1.295 22 C -0.021 4.021 23 C -0.124 4.124 24 C -0.141 4.141 25 C -0.146 4.146 26 C -0.147 4.147 27 C -0.097 4.097 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.375 0.625 44 H 0.248 0.752 45 H 0.098 0.902 46 H 0.126 0.874 47 H 0.136 0.864 48 H 0.125 0.875 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.423 6.166 9.171 12.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.189 4.189 3 C -0.003 4.003 4 N -0.355 5.355 5 C -0.029 4.029 6 C 0.066 3.934 7 C -0.192 4.192 8 C -0.225 4.225 9 O -0.377 6.377 10 C 0.331 3.669 11 O -0.423 6.423 12 C 0.036 3.964 13 H 0.071 0.929 14 C -0.562 4.562 15 H 0.083 0.917 16 C -0.168 4.168 17 N -0.478 5.478 18 Si 0.751 3.249 19 H -0.183 1.183 20 H -0.212 1.212 21 H -0.222 1.222 22 C -0.022 4.022 23 C -0.143 4.143 24 C -0.159 4.159 25 C -0.164 4.164 26 C -0.165 4.165 27 C -0.115 4.115 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.222 0.778 44 H 0.057 0.943 45 H 0.117 0.883 46 H 0.144 0.856 47 H 0.154 0.846 48 H 0.143 0.857 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.089 6.445 9.101 12.258 hybrid contribution 0.780 -1.875 -0.500 2.091 sum -4.309 4.570 8.600 10.650 Atomic orbital electron populations 1.21605 0.94002 1.01774 1.02141 1.22055 0.97044 0.97678 1.02162 1.21664 0.79299 0.96759 1.02535 1.47889 1.06641 1.75880 1.05070 1.22011 0.95887 0.96904 0.88066 1.21804 0.93540 0.91437 0.86608 1.21814 0.94720 1.00521 1.02098 1.22357 0.99789 1.02955 0.97376 1.86463 1.38196 1.58118 1.54927 1.21033 0.88366 0.73048 0.84449 1.90523 1.16525 1.48817 1.86396 1.17972 0.93052 0.96281 0.89109 0.92851 1.20699 0.93143 0.95894 1.46489 0.91659 1.25560 0.95055 1.00264 0.95872 1.70435 0.99262 1.34941 1.43143 0.86028 0.79005 0.81852 0.78010 1.18333 1.21181 1.22168 1.19942 0.95093 0.92119 0.95077 1.21006 0.97904 0.97057 0.98285 1.21147 1.00407 1.00933 0.93372 1.21127 1.00315 0.98326 0.96599 1.21277 0.98596 0.97520 0.99090 1.21035 0.99497 0.98086 0.92848 0.92835 0.91078 0.93017 0.92333 0.92789 0.88736 0.91623 0.88867 0.93280 0.88989 0.92103 0.92847 0.92900 0.91404 0.89719 0.77759 0.94266 0.88339 0.85637 0.84616 0.85664 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.91 71.98 0.71 -2.60 16 2 C -0.15 -4.65 6.24 30.60 0.19 -4.46 16 3 C 0.12 3.67 4.05 86.38 0.35 4.02 16 4 N -0.62 -23.00 2.15 -821.81 -1.77 -24.77 16 5 C 0.10 3.00 4.71 86.38 0.41 3.41 16 6 C 0.11 2.94 1.17 -10.79 -0.01 2.93 16 7 C -0.13 -3.11 7.60 71.98 0.55 -2.57 16 8 C -0.17 -3.51 8.81 71.98 0.63 -2.87 16 9 O -0.57 -19.75 11.89 -146.80 -1.75 -21.49 16 10 C 0.54 25.19 4.83 87.66 0.42 25.62 16 11 O -0.55 -29.25 12.08 -0.84 -0.01 -29.26 16 12 C 0.06 2.72 2.19 -13.03 -0.03 2.69 16 13 H 0.05 2.40 5.95 -2.39 -0.01 2.39 16 14 C -0.52 -26.18 5.48 25.60 0.14 -26.04 16 15 H 0.07 3.18 7.49 -2.91 -0.02 3.16 16 16 C 0.04 2.02 4.05 84.65 0.34 2.37 16 17 N -0.84 -48.28 9.91 21.44 0.21 -48.07 16 18 Si 0.92 42.33 29.54 68.60 2.03 44.36 16 19 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 20 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 C -0.02 -1.04 4.19 -19.86 -0.08 -1.12 16 23 C -0.12 -5.77 8.45 22.27 0.19 -5.58 16 24 C -0.14 -5.72 10.05 22.27 0.22 -5.50 16 25 C -0.15 -5.56 10.05 22.27 0.22 -5.34 16 26 C -0.15 -6.04 10.05 22.27 0.22 -5.82 16 27 C -0.10 -4.56 8.20 22.27 0.18 -4.38 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 2.32 5.67 -2.39 -0.01 2.31 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 2.22 6.19 -2.39 -0.01 2.21 16 34 H 0.07 2.14 5.84 -2.39 -0.01 2.13 16 35 H 0.09 2.38 8.07 -2.39 -0.02 2.36 16 36 H 0.05 1.85 7.36 -2.39 -0.02 1.83 16 37 H 0.09 1.57 8.07 -2.39 -0.02 1.55 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.05 1.42 6.04 -2.39 -0.01 1.40 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.37 13.23 8.61 -74.05 -0.64 12.59 16 44 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 45 H 0.10 4.71 7.07 -2.91 -0.02 4.69 16 46 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 47 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 48 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 49 H 0.11 5.31 6.43 -2.91 -0.02 5.29 16 Total: -1.00 -65.58 377.32 3.68 -61.90 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: 0.30 Total: 42.57 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 4.67 Total: -25.25 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -1.56 Total: -72.84 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -1.76 Total: -50.75 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -65.58 3.68 -61.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411883774.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.004 kcal (2) G-P(sol) polarization free energy of solvation -65.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds