Wall clock time and date at job start Tue Mar 31 2020 12:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39904 * 109.46943 * 2 1 4 4 F 1.39901 * 109.47535 * 239.99975 * 2 1 3 5 5 C 1.52998 * 109.47181 * 119.99879 * 2 1 3 6 6 N 1.46906 * 109.46998 * 186.04191 * 5 2 1 7 7 C 1.46891 * 110.99959 * 312.13667 * 6 5 2 8 8 C 1.53246 * 109.34037 * 187.25377 * 7 6 5 9 9 N 1.47071 * 108.51956 * 306.17214 * 8 7 6 10 10 C 1.34776 * 120.88350 * 231.16075 * 9 8 7 11 11 O 1.21287 * 119.99513 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00450 * 180.02562 * 10 9 8 13 13 H 1.09000 * 109.46831 * 40.00236 * 12 10 9 14 14 N 1.46904 * 109.47016 * 159.99857 * 12 10 9 15 15 C 1.52996 * 109.47216 * 280.00222 * 12 10 9 16 16 C 1.52999 * 109.47218 * 175.00081 * 15 12 10 17 17 C 1.50699 * 109.47295 * 179.97438 * 16 15 12 18 18 H 1.07997 * 119.99978 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00109 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00285 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00022 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46973 * 60.00366 * 21 19 17 23 23 H 1.48497 * 109.47233 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47142 * 300.00242 * 21 19 17 25 25 C 1.47085 * 118.23835 * 51.18249 * 9 8 7 26 26 C 1.46896 * 110.99978 * 76.43951 * 6 5 2 27 27 H 1.08999 * 109.47381 * 300.00347 * 1 2 3 28 28 H 1.09004 * 109.46853 * 60.00398 * 1 2 3 29 29 H 1.09005 * 109.46828 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47347 * 66.04346 * 5 2 1 31 31 H 1.09005 * 109.47155 * 306.03939 * 5 2 1 32 32 H 1.09002 * 109.49629 * 67.29502 * 7 6 5 33 33 H 1.08997 * 109.49355 * 307.21339 * 7 6 5 34 34 H 1.08997 * 109.62965 * 186.45950 * 8 7 6 35 35 H 1.09004 * 109.62426 * 65.88006 * 8 7 6 36 36 H 1.00901 * 110.99995 * 296.04519 * 14 12 10 37 37 H 1.00893 * 110.99708 * 60.00354 * 14 12 10 38 38 H 1.09004 * 109.46839 * 294.99892 * 15 12 10 39 39 H 1.08999 * 109.47408 * 54.99725 * 15 12 10 40 40 H 1.09004 * 109.47061 * 299.99675 * 16 15 12 41 41 H 1.08999 * 109.47222 * 59.99529 * 16 15 12 42 42 H 0.96997 * 120.00541 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.62807 * 68.52574 * 25 9 8 44 44 H 1.09008 * 109.62666 * 189.10445 * 25 9 8 45 45 H 1.09003 * 109.49155 * 52.78322 * 26 6 5 46 46 H 1.08995 * 109.49378 * 292.70820 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2492 6 7 3.5018 -0.5962 1.3243 7 6 4.1249 -0.9217 0.0345 8 6 5.6479 -0.9565 0.2011 9 7 6.0818 0.3157 0.7979 10 6 7.0725 1.0393 0.2400 11 8 7.6187 0.6436 -0.7681 12 6 7.5017 2.3399 0.8686 13 1 7.5098 2.2339 1.9534 14 7 8.8499 2.6885 0.4006 15 6 6.5221 3.4460 0.4715 16 6 6.8848 4.7371 1.2079 17 6 5.9203 5.8268 0.8163 18 1 5.1276 5.6191 0.1129 19 6 6.0493 7.0886 1.3568 20 7 7.0143 7.3415 2.2137 21 14 4.8532 8.4391 0.8719 22 1 3.4725 8.0319 1.2368 23 1 5.2054 9.6923 1.5865 24 1 4.9312 8.6668 -0.5935 25 6 5.4061 0.7772 2.0201 26 6 3.8928 0.7438 1.7819 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.7677 -1.7753 1.1968 31 1 1.5911 -0.2736 2.1360 32 1 3.8567 -0.1631 -0.7008 33 1 3.7736 -1.8966 -0.3034 34 1 6.1199 -1.0838 -0.7731 35 1 5.9257 -1.7821 0.8564 36 1 9.5266 2.0053 0.7062 37 1 8.8687 2.7924 -0.6028 38 1 6.5791 3.6129 -0.6042 39 1 5.5087 3.1473 0.7395 40 1 6.8278 4.5702 2.2835 41 1 7.8983 5.0358 0.9398 42 1 7.1053 8.2293 2.5937 43 1 5.6607 0.1184 2.8503 44 1 5.7184 1.7963 2.2486 45 1 3.3730 0.9768 2.7113 46 1 3.6277 1.4792 1.0224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576076885.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:35 Heat of formation + Delta-G solvation = -126.217526 kcal Electronic energy + Delta-G solvation = -28984.460460 eV Core-core repulsion = 24772.819281 eV Total energy + Delta-G solvation = -4211.641180 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.181 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.40240 -47.28036 -40.27943 -38.24145 -35.28085 -35.03563 -32.79970 -32.39301 -31.29722 -30.07352 -28.58208 -26.45430 -25.07160 -24.15246 -23.13093 -22.22667 -21.13816 -20.26568 -18.81192 -17.97015 -17.49018 -16.86936 -16.66703 -16.37341 -15.87710 -15.41588 -15.30345 -15.24352 -14.69299 -14.54278 -14.35509 -14.04682 -13.84995 -13.55429 -13.45770 -13.23962 -13.08462 -12.92270 -12.63820 -12.31609 -12.20112 -12.07171 -11.99079 -11.95172 -11.51257 -11.30016 -11.22146 -11.19940 -10.86414 -10.63709 -10.53999 -10.01981 -9.77541 -9.34435 -8.99943 -8.87793 -8.38114 -8.32190 -8.17089 -5.92392 -3.94387 2.78375 3.00932 3.36625 3.36658 3.41197 3.43967 3.52801 3.85428 4.01538 4.17971 4.50619 4.60967 4.67382 4.82350 4.90999 4.99272 5.06040 5.11967 5.18840 5.23665 5.31261 5.36263 5.39398 5.41790 5.43119 5.54068 5.65096 5.72743 5.77241 5.84753 5.98075 6.41927 6.48911 6.54562 6.66973 6.69155 7.09636 7.38537 7.55969 7.76956 7.82686 7.97266 8.14549 8.31097 8.50107 9.13228 9.68633 11.18458 Molecular weight = 319.18amu Principal moments of inertia in cm(-1) A = 0.011170 B = 0.004346 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.186801 B = 6440.875724 C = 8256.434077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.246 3.754 3 F -0.192 7.192 4 F -0.198 7.198 5 C 0.020 3.980 6 N -0.529 5.529 7 C 0.030 3.970 8 C 0.114 3.886 9 N -0.613 5.613 10 C 0.486 3.514 11 O -0.556 6.556 12 C 0.078 3.922 13 H 0.098 0.902 14 N -0.807 5.807 15 C -0.096 4.096 16 C 0.033 3.967 17 C -0.522 4.522 18 H 0.051 0.949 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.888 3.112 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.278 1.278 25 C 0.109 3.891 26 C 0.019 3.981 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.334 0.666 37 H 0.347 0.653 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.013 0.987 41 H 0.035 0.965 42 H 0.260 0.740 43 H 0.074 0.926 44 H 0.104 0.896 45 H 0.090 0.910 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.627 -20.326 0.412 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.208 3.792 3 F -0.173 7.173 4 F -0.180 7.180 5 C -0.109 4.109 6 N -0.251 5.251 7 C -0.098 4.098 8 C -0.009 4.009 9 N -0.347 5.347 10 C 0.274 3.726 11 O -0.434 6.434 12 C -0.038 4.038 13 H 0.116 0.884 14 N -0.334 5.334 15 C -0.134 4.134 16 C -0.004 4.004 17 C -0.560 4.560 18 H 0.069 0.931 19 C -0.142 4.142 20 N -0.532 5.532 21 Si 0.716 3.284 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.015 4.015 26 C -0.109 4.109 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.145 0.855 37 H 0.161 0.839 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.031 0.969 41 H 0.053 0.947 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.122 0.878 45 H 0.109 0.891 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.093 -20.023 0.748 22.903 hybrid contribution -1.127 0.439 -1.436 1.877 sum -12.220 -19.585 -0.688 23.095 Atomic orbital electron populations 1.22763 0.91585 1.05291 1.05603 1.22208 0.94514 0.76635 0.85822 1.93007 1.90003 1.37495 1.96780 1.92999 1.90113 1.80871 1.53978 1.23387 0.89574 1.02416 0.95566 1.62112 1.05662 1.28522 1.28827 1.22887 0.94779 1.02202 0.89959 1.21652 0.93163 0.86025 1.00057 1.48284 1.36393 1.22338 1.27700 1.22761 0.78546 0.86956 0.84372 1.90627 1.55555 1.71807 1.25381 1.21857 0.91844 0.90080 1.00018 0.88428 1.59017 1.03759 1.51613 1.19056 1.21692 0.95062 0.95485 1.01185 1.19004 0.97867 0.88968 0.94589 1.21230 1.13742 0.95327 1.25709 0.93108 1.24967 0.95510 0.98480 0.95210 1.69960 1.31608 1.21563 1.30052 0.86736 0.81537 0.81484 0.78679 1.20394 1.21315 1.20343 1.21952 0.91055 1.01870 0.86574 1.22917 0.96304 0.89496 1.02132 0.89108 0.90041 0.89261 0.87520 0.87510 0.92601 0.89347 0.88892 0.91201 0.85476 0.83865 0.92910 0.92832 0.96894 0.94660 0.93056 0.90768 0.87788 0.89146 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.19 9.38 37.16 0.35 -0.84 16 2 C 0.25 2.29 1.78 -26.73 -0.05 2.24 16 3 F -0.19 -2.48 13.65 2.25 0.03 -2.45 16 4 F -0.20 -2.20 13.66 2.25 0.03 -2.17 16 5 C 0.02 0.15 5.28 -3.82 -0.02 0.13 16 6 N -0.53 -5.37 4.83 -234.33 -1.13 -6.50 16 7 C 0.03 0.34 4.09 -3.70 -0.02 0.32 16 8 C 0.11 1.44 6.60 -3.60 -0.02 1.41 16 9 N -0.61 -8.72 3.01 -172.46 -0.52 -9.24 16 10 C 0.49 8.26 6.95 -10.99 -0.08 8.18 16 11 O -0.56 -10.83 15.70 5.55 0.09 -10.75 16 12 C 0.08 1.36 2.29 -68.87 -0.16 1.20 16 13 H 0.10 1.61 6.87 -51.93 -0.36 1.25 16 14 N -0.81 -14.15 8.44 -5.65 -0.05 -14.20 16 15 C -0.10 -1.99 4.45 -26.73 -0.12 -2.11 16 16 C 0.03 0.84 4.86 -27.88 -0.14 0.71 16 17 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 18 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 21 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.11 1.33 5.96 -3.60 -0.02 1.31 16 26 C 0.02 0.22 5.14 -3.71 -0.02 0.20 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.11 0.63 7.84 -51.93 -0.41 0.23 16 32 H 0.06 0.78 5.84 -51.93 -0.30 0.47 16 33 H 0.09 0.86 7.72 -51.93 -0.40 0.46 16 34 H 0.09 1.29 7.06 -51.93 -0.37 0.93 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.33 5.10 9.06 -39.29 -0.36 4.74 16 37 H 0.35 6.21 8.58 -39.30 -0.34 5.88 16 38 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 1.06 6.93 -51.93 -0.36 0.70 16 40 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.10 1.39 4.85 -51.92 -0.25 1.14 16 45 H 0.09 0.87 7.92 -51.93 -0.41 0.46 16 46 H 0.07 0.99 5.63 -51.93 -0.29 0.69 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -33.64 362.02 -8.25 -41.88 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -7.17 Total: 8.03 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -0.70 Total: -0.74 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.96 Total: -56.08 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.06 Total: -4.62 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.64 -8.25 -41.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576076885.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.335 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds