Wall clock time and date at job start Tue Mar 31 2020 12:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39904 * 109.46943 * 2 1 4 4 F 1.39901 * 109.47535 * 239.99975 * 2 1 3 5 5 C 1.52998 * 109.47181 * 119.99879 * 2 1 3 6 6 N 1.46906 * 109.46998 * 186.04191 * 5 2 1 7 7 C 1.46891 * 110.99959 * 312.13667 * 6 5 2 8 8 C 1.53246 * 109.34037 * 187.25377 * 7 6 5 9 9 N 1.47071 * 108.51956 * 306.17214 * 8 7 6 10 10 C 1.34776 * 120.88350 * 231.16075 * 9 8 7 11 11 O 1.21287 * 119.99513 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00450 * 180.02562 * 10 9 8 13 13 H 1.09000 * 109.46831 * 40.00236 * 12 10 9 14 14 N 1.46904 * 109.47016 * 159.99857 * 12 10 9 15 15 C 1.52996 * 109.47216 * 280.00222 * 12 10 9 16 16 C 1.52999 * 109.47218 * 175.00081 * 15 12 10 17 17 C 1.50699 * 109.47295 * 179.97438 * 16 15 12 18 18 H 1.07997 * 119.99978 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00109 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00285 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00022 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46973 * 60.00366 * 21 19 17 23 23 H 1.48497 * 109.47233 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47142 * 300.00242 * 21 19 17 25 25 C 1.47085 * 118.23835 * 51.18249 * 9 8 7 26 26 C 1.46896 * 110.99978 * 76.43951 * 6 5 2 27 27 H 1.08999 * 109.47381 * 300.00347 * 1 2 3 28 28 H 1.09004 * 109.46853 * 60.00398 * 1 2 3 29 29 H 1.09005 * 109.46828 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47347 * 66.04346 * 5 2 1 31 31 H 1.09005 * 109.47155 * 306.03939 * 5 2 1 32 32 H 1.09002 * 109.49629 * 67.29502 * 7 6 5 33 33 H 1.08997 * 109.49355 * 307.21339 * 7 6 5 34 34 H 1.08997 * 109.62965 * 186.45950 * 8 7 6 35 35 H 1.09004 * 109.62426 * 65.88006 * 8 7 6 36 36 H 1.00901 * 110.99995 * 296.04519 * 14 12 10 37 37 H 1.00893 * 110.99708 * 60.00354 * 14 12 10 38 38 H 1.09004 * 109.46839 * 294.99892 * 15 12 10 39 39 H 1.08999 * 109.47408 * 54.99725 * 15 12 10 40 40 H 1.09004 * 109.47061 * 299.99675 * 16 15 12 41 41 H 1.08999 * 109.47222 * 59.99529 * 16 15 12 42 42 H 0.96997 * 120.00541 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.62807 * 68.52574 * 25 9 8 44 44 H 1.09008 * 109.62666 * 189.10445 * 25 9 8 45 45 H 1.09003 * 109.49155 * 52.78322 * 26 6 5 46 46 H 1.08995 * 109.49378 * 292.70820 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2492 6 7 3.5018 -0.5962 1.3243 7 6 4.1249 -0.9217 0.0345 8 6 5.6479 -0.9565 0.2011 9 7 6.0818 0.3157 0.7979 10 6 7.0725 1.0393 0.2400 11 8 7.6187 0.6436 -0.7681 12 6 7.5017 2.3399 0.8686 13 1 7.5098 2.2339 1.9534 14 7 8.8499 2.6885 0.4006 15 6 6.5221 3.4460 0.4715 16 6 6.8848 4.7371 1.2079 17 6 5.9203 5.8268 0.8163 18 1 5.1276 5.6191 0.1129 19 6 6.0493 7.0886 1.3568 20 7 7.0143 7.3415 2.2137 21 14 4.8532 8.4391 0.8719 22 1 3.4725 8.0319 1.2368 23 1 5.2054 9.6923 1.5865 24 1 4.9312 8.6668 -0.5935 25 6 5.4061 0.7772 2.0201 26 6 3.8928 0.7438 1.7819 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.7677 -1.7753 1.1968 31 1 1.5911 -0.2736 2.1360 32 1 3.8567 -0.1631 -0.7008 33 1 3.7736 -1.8966 -0.3034 34 1 6.1199 -1.0838 -0.7731 35 1 5.9257 -1.7821 0.8564 36 1 9.5266 2.0053 0.7062 37 1 8.8687 2.7924 -0.6028 38 1 6.5791 3.6129 -0.6042 39 1 5.5087 3.1473 0.7395 40 1 6.8278 4.5702 2.2835 41 1 7.8983 5.0358 0.9398 42 1 7.1053 8.2293 2.5937 43 1 5.6607 0.1184 2.8503 44 1 5.7184 1.7963 2.2486 45 1 3.3730 0.9768 2.7113 46 1 3.6277 1.4792 1.0224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576076885.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:34 Heat of formation + Delta-G solvation = -151.461946 kcal Electronic energy + Delta-G solvation = -28985.555141 eV Core-core repulsion = 24772.819281 eV Total energy + Delta-G solvation = -4212.735860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.181 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.18717 -48.09799 -41.51558 -39.28584 -36.92618 -36.04137 -34.84647 -33.09225 -32.28606 -31.94793 -29.50696 -28.08546 -26.15672 -25.39326 -24.45756 -23.03793 -22.40439 -21.81622 -20.02143 -18.78389 -18.71975 -18.30880 -17.66956 -17.53522 -17.27735 -16.85215 -16.49821 -16.33486 -16.14633 -15.54448 -15.50133 -15.28561 -14.97571 -14.78947 -14.41845 -14.28628 -14.11024 -13.87177 -13.74097 -13.64147 -13.44929 -13.29252 -12.96455 -12.84393 -12.81167 -12.74707 -12.53820 -12.30293 -12.23069 -12.14007 -12.08230 -11.74897 -11.63586 -11.24889 -11.00647 -10.49013 -9.93511 -9.66202 -9.30950 -8.13896 -6.24065 1.39796 1.42511 1.43244 1.51133 1.88626 2.43939 2.58642 2.88460 3.18880 3.24094 3.37599 3.41758 3.52490 3.61887 3.84901 3.91156 4.02830 4.07802 4.20221 4.24539 4.34316 4.44018 4.44844 4.55399 4.65644 4.68170 4.70078 4.75474 4.81218 4.82731 4.89319 4.99014 5.03211 5.21010 5.39598 5.55520 5.75189 5.78646 5.82397 5.97013 6.04395 6.27376 6.30157 6.47744 6.92923 6.99463 7.43713 8.97048 Molecular weight = 319.18amu Principal moments of inertia in cm(-1) A = 0.011170 B = 0.004346 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.186801 B = 6440.875724 C = 8256.434077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.231 3.769 3 F -0.218 7.218 4 F -0.213 7.213 5 C 0.021 3.979 6 N -0.523 5.523 7 C 0.039 3.961 8 C 0.113 3.887 9 N -0.607 5.607 10 C 0.486 3.514 11 O -0.585 6.585 12 C 0.086 3.914 13 H 0.111 0.889 14 N -0.817 5.817 15 C -0.079 4.079 16 C 0.044 3.956 17 C -0.544 4.544 18 H 0.050 0.950 19 C 0.007 3.993 20 N -0.927 5.927 21 Si 0.955 3.045 22 H -0.266 1.266 23 H -0.281 1.281 24 H -0.274 1.274 25 C 0.105 3.895 26 C 0.022 3.978 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.026 0.974 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.347 0.653 37 H 0.344 0.656 38 H 0.035 0.965 39 H 0.061 0.939 40 H -0.001 1.001 41 H 0.006 0.994 42 H 0.263 0.737 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.113 0.887 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.706 -21.684 1.465 25.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.193 3.807 3 F -0.200 7.200 4 F -0.194 7.194 5 C -0.108 4.108 6 N -0.245 5.245 7 C -0.089 4.089 8 C -0.010 4.010 9 N -0.340 5.340 10 C 0.274 3.726 11 O -0.466 6.466 12 C -0.029 4.029 13 H 0.129 0.871 14 N -0.345 5.345 15 C -0.117 4.117 16 C 0.007 3.993 17 C -0.582 4.582 18 H 0.068 0.932 19 C -0.191 4.191 20 N -0.567 5.567 21 Si 0.780 3.220 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.199 1.199 25 C -0.018 4.018 26 C -0.106 4.106 27 H 0.124 0.876 28 H 0.089 0.911 29 H 0.132 0.868 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.044 0.956 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.160 0.840 37 H 0.157 0.843 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.017 0.983 41 H 0.024 0.976 42 H 0.072 0.928 43 H 0.118 0.882 44 H 0.109 0.891 45 H 0.132 0.868 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.206 -21.411 1.822 25.222 hybrid contribution -0.500 0.821 -1.741 1.989 sum -13.706 -20.591 0.081 24.735 Atomic orbital electron populations 1.22778 0.88999 1.06996 1.05846 1.22794 0.96461 0.75464 0.85979 1.92962 1.90532 1.39576 1.96890 1.92967 1.90500 1.80993 1.54977 1.23609 0.87664 1.04007 0.95475 1.62132 1.07477 1.27257 1.27682 1.22764 0.93885 1.02274 0.89990 1.21785 0.94017 0.85610 0.99586 1.48345 1.35209 1.22499 1.27938 1.22458 0.79216 0.86936 0.84024 1.90612 1.56891 1.72513 1.26563 1.21638 0.91071 0.89441 1.00761 0.87082 1.58999 1.04208 1.52460 1.18882 1.21383 0.96455 0.94592 0.99289 1.18790 0.95784 0.90728 0.94046 1.21631 1.14253 0.96541 1.25812 0.93179 1.25824 0.97258 1.00987 0.95028 1.70083 1.33249 1.22311 1.31031 0.85657 0.79553 0.78360 0.78396 1.19095 1.20602 1.19917 1.22117 0.91633 1.01700 0.86316 1.22872 0.95726 0.89644 1.02354 0.87613 0.91085 0.86818 0.84849 0.85297 0.95583 0.87373 0.90617 0.89037 0.83959 0.84257 0.94619 0.92041 0.98309 0.97557 0.92837 0.88242 0.89140 0.86841 0.94058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 9.38 71.98 0.68 -1.20 16 2 C 0.23 3.92 1.78 30.59 0.05 3.98 16 3 F -0.22 -5.62 13.65 44.97 0.61 -5.00 16 4 F -0.21 -4.56 13.66 44.97 0.61 -3.95 16 5 C 0.02 0.26 5.28 86.30 0.46 0.71 16 6 N -0.52 -9.32 4.83 -895.28 -4.32 -13.64 16 7 C 0.04 0.84 4.09 86.39 0.35 1.19 16 8 C 0.11 2.70 6.60 86.35 0.57 3.27 16 9 N -0.61 -16.82 3.01 -817.93 -2.46 -19.28 16 10 C 0.49 16.59 6.95 87.66 0.61 17.20 16 11 O -0.58 -23.14 15.70 -3.05 -0.05 -23.19 16 12 C 0.09 3.07 2.29 44.17 0.10 3.17 16 13 H 0.11 3.63 6.87 -2.39 -0.02 3.61 16 14 N -0.82 -29.22 8.44 -171.80 -1.45 -30.67 16 15 C -0.08 -3.36 4.45 30.59 0.14 -3.22 16 16 C 0.04 2.31 4.86 29.85 0.15 2.45 16 17 C -0.54 -31.40 9.11 25.60 0.23 -31.17 16 18 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 19 C 0.01 0.42 5.46 84.65 0.46 0.88 16 20 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 21 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 25 C 0.10 2.41 5.96 86.35 0.51 2.93 16 26 C 0.02 0.47 5.14 86.38 0.44 0.92 16 27 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.13 1.01 7.84 -2.38 -0.02 0.99 16 32 H 0.03 0.73 5.84 -2.39 -0.01 0.71 16 33 H 0.11 1.88 7.72 -2.39 -0.02 1.86 16 34 H 0.08 2.10 7.06 -2.39 -0.02 2.08 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.35 10.66 9.06 -89.69 -0.81 9.84 16 37 H 0.34 12.71 8.58 -89.70 -0.77 11.94 16 38 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.06 2.49 6.93 -2.39 -0.02 2.48 16 40 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 41 H 0.01 0.35 7.75 -2.39 -0.02 0.33 16 42 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 43 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.09 2.35 4.85 -2.38 -0.01 2.34 16 45 H 0.11 1.88 7.92 -2.39 -0.02 1.86 16 46 H 0.04 1.15 5.63 -2.39 -0.01 1.14 16 Total: -1.00 -74.12 362.02 -0.56 -74.68 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.57 Total: 29.32 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 4.75 Total: 1.12 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -7.95 Total: -119.80 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.05 Total: -23.19 kcal Atomic # 9 Polarization: -10.18 SS G_CDS: 1.23 Total: -8.95 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -74.12 -0.56 -74.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576076885.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.780 kcal (2) G-P(sol) polarization free energy of solvation -74.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds