Wall clock time and date at job start Tue Mar 31 2020 12:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47026 * 2 1 4 4 C 1.52998 * 109.47559 * 120.00346 * 2 1 3 5 5 C 1.53000 * 109.46947 * 64.99804 * 4 2 1 6 6 H 1.08999 * 109.47479 * 305.00342 * 5 4 2 7 7 C 1.53004 * 109.47151 * 65.00365 * 5 4 2 8 8 C 1.53006 * 109.47307 * 184.99918 * 5 4 2 9 9 C 1.50697 * 109.47457 * 174.99959 * 8 5 4 10 10 O 1.21280 * 119.99935 * 0.02562 * 9 8 5 11 11 N 1.34775 * 120.00040 * 180.02562 * 9 8 5 12 12 C 1.46498 * 119.99904 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47300 * 179.97438 * 12 11 9 14 14 C 1.38300 * 119.93634 * 269.73138 * 13 12 11 15 15 C 1.38103 * 120.07235 * 179.72038 * 14 13 12 16 16 C 1.38881 * 119.92859 * 0.56979 * 15 14 13 17 17 O 1.35743 * 120.07033 * 179.67702 * 16 15 14 18 18 C 1.34829 * 117.00323 * 174.48588 * 17 16 15 19 19 H 1.08000 * 119.99772 * 5.06302 * 18 17 16 20 20 C 1.38655 * 120.00285 * 185.06067 * 18 17 16 21 21 N 1.31559 * 119.99902 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00043 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.46873 * 89.99837 * 22 20 18 24 24 H 1.48495 * 109.47237 * 210.00095 * 22 20 18 25 25 H 1.48505 * 109.47176 * 330.00205 * 22 20 18 26 26 C 1.38884 * 119.86119 * 359.70391 * 16 15 14 27 27 C 1.38100 * 119.93123 * 0.02562 * 26 16 15 28 28 H 1.09009 * 109.46929 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47290 * 299.99477 * 1 2 3 30 30 H 1.08994 * 109.47765 * 59.99664 * 1 2 3 31 31 H 1.08998 * 109.46961 * 240.00563 * 2 1 3 32 32 H 1.08997 * 109.47233 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47648 * 300.00735 * 3 2 1 34 34 H 1.08998 * 109.46791 * 60.00459 * 3 2 1 35 35 H 1.08995 * 109.47322 * 305.00372 * 4 2 1 36 36 H 1.09001 * 109.47594 * 184.99821 * 4 2 1 37 37 H 1.08999 * 109.46948 * 59.99652 * 7 5 4 38 38 H 1.08997 * 109.47092 * 179.97438 * 7 5 4 39 39 H 1.09001 * 109.46902 * 299.99993 * 7 5 4 40 40 H 1.09007 * 109.46497 * 55.00312 * 8 5 4 41 41 H 1.08996 * 109.47410 * 295.00799 * 8 5 4 42 42 H 0.96993 * 120.00031 * 0.02562 * 11 9 8 43 43 H 1.08999 * 109.47244 * 60.00112 * 12 11 9 44 44 H 1.09004 * 109.47345 * 300.00174 * 12 11 9 45 45 H 1.08004 * 119.96372 * 359.97187 * 14 13 12 46 46 H 1.07998 * 120.03412 * 180.26808 * 15 14 13 47 47 H 0.97002 * 119.99895 * 179.97438 * 21 20 18 48 48 H 1.07996 * 120.03050 * 179.97438 * 26 16 15 49 49 H 1.08003 * 119.96708 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1878 6 1 0.5563 -2.2708 1.0526 7 6 2.3449 -2.8707 0.0124 8 6 2.0355 -2.8890 2.4916 9 6 1.5286 -4.3082 2.4819 10 8 0.9087 -4.7241 1.5261 11 7 1.7642 -5.1151 3.5354 12 6 1.2719 -6.4948 3.5257 13 6 1.6660 -7.1778 4.8099 14 6 2.8680 -7.8572 4.8896 15 6 3.2346 -8.4792 6.0668 16 6 2.3893 -8.4321 7.1678 17 8 2.7438 -9.0481 8.3243 18 6 1.9338 -8.8681 9.3870 19 1 1.0074 -8.3246 9.2739 20 6 2.2900 -9.3807 10.6251 21 7 1.4994 -9.2055 11.6618 22 14 3.8926 -10.3202 10.8209 23 1 4.9806 -9.3742 11.1767 24 1 3.7448 -11.3322 11.8975 25 1 4.2265 -11.0010 9.5441 26 6 1.1803 -7.7539 7.0829 27 6 0.8220 -7.1292 5.9045 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6765 1.9564 -0.8898 34 1 1.6766 1.9562 0.8900 35 1 1.6055 -0.2619 2.1369 36 1 3.1264 -0.6444 1.2950 37 1 3.4238 -2.7955 0.1476 38 1 2.0569 -3.9211 -0.0310 39 1 2.0598 -2.3767 -0.9165 40 1 1.6010 -2.3538 3.3360 41 1 3.1216 -2.8917 2.5832 42 1 2.2596 -4.7823 4.3000 43 1 1.7070 -7.0300 2.6817 44 1 0.1858 -6.4925 3.4335 45 1 3.5226 -7.8978 4.0315 46 1 4.1753 -9.0059 6.1297 47 1 1.7484 -9.5644 12.5279 48 1 0.5207 -7.7159 7.9372 49 1 -0.1179 -6.6012 5.8380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067926091.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:30 Heat of formation + Delta-G solvation = -74.598773 kcal Electronic energy + Delta-G solvation = -25642.003455 eV Core-core repulsion = 21954.537411 eV Total energy + Delta-G solvation = -3687.466044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.02269 -39.26921 -37.79703 -36.99134 -34.50799 -33.71124 -32.49510 -30.50212 -30.30569 -28.14386 -27.45873 -26.86577 -25.89761 -24.43266 -22.21276 -21.72157 -20.62897 -20.15108 -19.63876 -18.01173 -17.50942 -17.08483 -16.08667 -15.80259 -15.51764 -15.02239 -14.70951 -14.57129 -14.19199 -14.08859 -14.00025 -13.90280 -13.53791 -13.25789 -13.12452 -12.89806 -12.74609 -12.56313 -12.36198 -12.27957 -12.03830 -11.90642 -11.66497 -11.55986 -11.46034 -11.19283 -10.98162 -10.87245 -10.85171 -10.78517 -10.62265 -10.56216 -10.24191 -9.71841 -9.50316 -8.97630 -8.96454 -8.40258 -7.49678 -6.51598 -4.18644 1.93942 2.00377 2.66769 3.15135 3.19143 3.32981 3.37062 4.15148 4.35105 4.43405 4.53392 4.57766 4.72854 4.74765 4.85844 4.97363 5.00416 5.12564 5.24708 5.28563 5.32110 5.33682 5.34388 5.40313 5.50998 5.52832 5.54204 5.62204 5.66154 5.70798 5.77754 5.81242 5.85788 5.94495 5.96559 6.01031 6.09371 6.22649 6.25282 6.31340 6.43202 6.52910 6.65683 6.88102 7.10471 7.16761 7.47674 7.58374 7.69007 7.92491 8.26820 8.82912 9.43496 10.55504 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.026772 B = 0.001864 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.618866 B =15020.036147 C =15289.052918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.111 4.111 5 C -0.077 4.077 6 H 0.081 0.919 7 C -0.154 4.154 8 C -0.139 4.139 9 C 0.509 3.491 10 O -0.545 6.545 11 N -0.725 5.725 12 C 0.177 3.823 13 C -0.206 4.206 14 C -0.057 4.057 15 C -0.195 4.195 16 C 0.166 3.834 17 O -0.213 6.213 18 C -0.392 4.392 19 H 0.108 0.892 20 C 0.065 3.935 21 N -0.875 5.875 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.224 4.224 27 C -0.053 4.053 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.402 0.598 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.114 0.886 46 H 0.118 0.882 47 H 0.281 0.719 48 H 0.135 0.865 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.057 16.050 -19.514 25.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.149 4.149 5 C -0.095 4.095 6 H 0.099 0.901 7 C -0.211 4.211 8 C -0.179 4.179 9 C 0.295 3.705 10 O -0.423 6.423 11 N -0.376 5.376 12 C 0.055 3.945 13 C -0.207 4.207 14 C -0.076 4.076 15 C -0.214 4.214 16 C 0.113 3.887 17 O -0.117 6.117 18 C -0.467 4.467 19 H 0.125 0.875 20 C -0.139 4.139 21 N -0.512 5.512 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.183 1.183 26 C -0.243 4.243 27 C -0.072 4.072 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.236 0.764 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.132 0.868 46 H 0.136 0.864 47 H 0.091 0.909 48 H 0.152 0.848 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.752 15.537 -19.878 25.291 hybrid contribution 0.742 -0.231 0.867 1.164 sum 2.494 15.306 -19.011 24.534 Atomic orbital electron populations 1.21907 0.95315 1.02105 1.01453 1.21155 0.95958 0.95866 0.98755 1.21847 1.00832 0.96202 1.01609 1.21720 1.00791 0.94542 0.97800 1.20940 1.01596 0.93513 0.93495 0.90092 1.21993 0.99281 1.02451 0.97340 1.21784 1.02763 0.93000 1.00387 1.20721 0.79626 0.87780 0.82327 1.90651 1.40984 1.76541 1.34098 1.46379 1.57617 1.13177 1.20449 1.19974 0.98783 0.80523 0.95219 1.19294 0.97956 1.07819 0.95643 1.20535 0.95122 0.95698 0.96204 1.20215 1.00891 1.07876 0.92453 1.19183 0.92407 0.90250 0.86852 1.83572 1.49473 1.61877 1.16775 1.20785 1.03274 1.37584 0.85083 0.87503 1.24491 0.99003 0.96815 0.93640 1.69644 1.37106 1.43922 1.00525 0.86170 0.82206 0.79789 0.78692 1.19808 1.20670 1.18330 1.21284 0.98754 1.04838 0.99433 1.20704 0.97834 0.96661 0.91966 0.92139 0.92813 0.93037 0.90893 0.92825 0.92895 0.92795 0.91953 0.91946 0.93531 0.90713 0.92860 0.89046 0.89063 0.76422 0.91583 0.91557 0.86801 0.86366 0.90898 0.84786 0.87122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.95 37.16 0.33 -0.71 16 2 C -0.10 -0.67 2.78 -90.62 -0.25 -0.92 16 3 C -0.15 -0.88 9.19 37.16 0.34 -0.54 16 4 C -0.11 -0.77 4.15 -26.73 -0.11 -0.88 16 5 C -0.08 -0.66 1.90 -90.61 -0.17 -0.83 16 6 H 0.08 0.81 6.16 -51.93 -0.32 0.49 16 7 C -0.15 -1.42 8.70 37.16 0.32 -1.10 16 8 C -0.14 -1.17 5.17 -27.88 -0.14 -1.32 16 9 C 0.51 6.01 7.55 -10.99 -0.08 5.93 16 10 O -0.54 -8.23 13.96 5.56 0.08 -8.15 16 11 N -0.72 -8.35 5.55 -61.48 -0.34 -8.69 16 12 C 0.18 2.34 5.80 -5.20 -0.03 2.31 16 13 C -0.21 -3.11 5.25 -104.58 -0.55 -3.66 16 14 C -0.06 -0.88 9.69 -39.61 -0.38 -1.27 16 15 C -0.20 -3.60 9.99 -39.39 -0.39 -4.00 16 16 C 0.17 3.63 6.65 -39.10 -0.26 3.37 16 17 O -0.21 -5.39 8.59 0.07 0.00 -5.39 16 18 C -0.39 -10.66 9.95 30.89 0.31 -10.35 16 19 H 0.11 2.96 5.44 -52.49 -0.29 2.68 16 20 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 21 N -0.87 -24.56 13.96 55.48 0.77 -23.79 16 22 Si 0.91 21.01 28.62 -169.99 -4.86 16.14 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 H -0.26 -6.04 7.11 56.52 0.40 -5.63 16 26 C -0.22 -4.53 9.17 -39.39 -0.36 -4.89 16 27 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 28 H 0.06 0.47 6.46 -51.92 -0.34 0.13 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.52 6.34 -51.93 -0.33 0.19 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.88 5.95 -51.93 -0.31 0.57 16 39 H 0.05 0.45 6.46 -51.93 -0.34 0.12 16 40 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.40 4.06 8.46 -40.82 -0.35 3.71 16 43 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 44 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 45 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 46 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 47 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 49 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 LS Contribution 393.07 15.07 5.92 5.92 Total: -1.00 -29.25 393.07 -8.37 -37.62 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -8.03 Total: 4.81 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -1.92 Total: -18.47 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.43 Total: -32.48 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.08 Total: -13.54 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.86 Total: 16.14 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.25 -8.37 -37.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067926091.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.979 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds