Wall clock time and date at job start Tue Mar 31 2020 12:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47026 * 2 1 4 4 C 1.52998 * 109.47559 * 120.00346 * 2 1 3 5 5 C 1.53000 * 109.46947 * 64.99804 * 4 2 1 6 6 H 1.08999 * 109.47479 * 305.00342 * 5 4 2 7 7 C 1.53004 * 109.47151 * 65.00365 * 5 4 2 8 8 C 1.53006 * 109.47307 * 184.99918 * 5 4 2 9 9 C 1.50697 * 109.47457 * 174.99959 * 8 5 4 10 10 O 1.21280 * 119.99935 * 0.02562 * 9 8 5 11 11 N 1.34775 * 120.00040 * 180.02562 * 9 8 5 12 12 C 1.46498 * 119.99904 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47300 * 179.97438 * 12 11 9 14 14 C 1.38300 * 119.93634 * 269.73138 * 13 12 11 15 15 C 1.38103 * 120.07235 * 179.72038 * 14 13 12 16 16 C 1.38881 * 119.92859 * 0.56979 * 15 14 13 17 17 O 1.35743 * 120.07033 * 179.67702 * 16 15 14 18 18 C 1.34829 * 117.00323 * 174.48588 * 17 16 15 19 19 H 1.08000 * 119.99772 * 5.06302 * 18 17 16 20 20 C 1.38655 * 120.00285 * 185.06067 * 18 17 16 21 21 N 1.31559 * 119.99902 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00043 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.46873 * 89.99837 * 22 20 18 24 24 H 1.48495 * 109.47237 * 210.00095 * 22 20 18 25 25 H 1.48505 * 109.47176 * 330.00205 * 22 20 18 26 26 C 1.38884 * 119.86119 * 359.70391 * 16 15 14 27 27 C 1.38100 * 119.93123 * 0.02562 * 26 16 15 28 28 H 1.09009 * 109.46929 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47290 * 299.99477 * 1 2 3 30 30 H 1.08994 * 109.47765 * 59.99664 * 1 2 3 31 31 H 1.08998 * 109.46961 * 240.00563 * 2 1 3 32 32 H 1.08997 * 109.47233 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47648 * 300.00735 * 3 2 1 34 34 H 1.08998 * 109.46791 * 60.00459 * 3 2 1 35 35 H 1.08995 * 109.47322 * 305.00372 * 4 2 1 36 36 H 1.09001 * 109.47594 * 184.99821 * 4 2 1 37 37 H 1.08999 * 109.46948 * 59.99652 * 7 5 4 38 38 H 1.08997 * 109.47092 * 179.97438 * 7 5 4 39 39 H 1.09001 * 109.46902 * 299.99993 * 7 5 4 40 40 H 1.09007 * 109.46497 * 55.00312 * 8 5 4 41 41 H 1.08996 * 109.47410 * 295.00799 * 8 5 4 42 42 H 0.96993 * 120.00031 * 0.02562 * 11 9 8 43 43 H 1.08999 * 109.47244 * 60.00112 * 12 11 9 44 44 H 1.09004 * 109.47345 * 300.00174 * 12 11 9 45 45 H 1.08004 * 119.96372 * 359.97187 * 14 13 12 46 46 H 1.07998 * 120.03412 * 180.26808 * 15 14 13 47 47 H 0.97002 * 119.99895 * 179.97438 * 21 20 18 48 48 H 1.07996 * 120.03050 * 179.97438 * 26 16 15 49 49 H 1.08003 * 119.96708 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1878 6 1 0.5563 -2.2708 1.0526 7 6 2.3449 -2.8707 0.0124 8 6 2.0355 -2.8890 2.4916 9 6 1.5286 -4.3082 2.4819 10 8 0.9087 -4.7241 1.5261 11 7 1.7642 -5.1151 3.5354 12 6 1.2719 -6.4948 3.5257 13 6 1.6660 -7.1778 4.8099 14 6 2.8680 -7.8572 4.8896 15 6 3.2346 -8.4792 6.0668 16 6 2.3893 -8.4321 7.1678 17 8 2.7438 -9.0481 8.3243 18 6 1.9338 -8.8681 9.3870 19 1 1.0074 -8.3246 9.2739 20 6 2.2900 -9.3807 10.6251 21 7 1.4994 -9.2055 11.6618 22 14 3.8926 -10.3202 10.8209 23 1 4.9806 -9.3742 11.1767 24 1 3.7448 -11.3322 11.8975 25 1 4.2265 -11.0010 9.5441 26 6 1.1803 -7.7539 7.0829 27 6 0.8220 -7.1292 5.9045 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6765 1.9564 -0.8898 34 1 1.6766 1.9562 0.8900 35 1 1.6055 -0.2619 2.1369 36 1 3.1264 -0.6444 1.2950 37 1 3.4238 -2.7955 0.1476 38 1 2.0569 -3.9211 -0.0310 39 1 2.0598 -2.3767 -0.9165 40 1 1.6010 -2.3538 3.3360 41 1 3.1216 -2.8917 2.5832 42 1 2.2596 -4.7823 4.3000 43 1 1.7070 -7.0300 2.6817 44 1 0.1858 -6.4925 3.4335 45 1 3.5226 -7.8978 4.0315 46 1 4.1753 -9.0059 6.1297 47 1 1.7484 -9.5644 12.5279 48 1 0.5207 -7.7159 7.9372 49 1 -0.1179 -6.6012 5.8380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067926091.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:29 Heat of formation + Delta-G solvation = -90.360198 kcal Electronic energy + Delta-G solvation = -25642.686922 eV Core-core repulsion = 21954.537411 eV Total energy + Delta-G solvation = -3688.149511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.13516 -40.69285 -38.78339 -38.21067 -35.64454 -34.44761 -34.38168 -31.91835 -31.67359 -29.07017 -27.97780 -27.60748 -27.41357 -25.83132 -23.72948 -22.54849 -21.99856 -21.01536 -20.24034 -19.84827 -19.15189 -18.09279 -17.07130 -16.79642 -16.61048 -16.20801 -16.03611 -15.74617 -15.62920 -15.35249 -15.14969 -14.77275 -14.65048 -14.43579 -14.29491 -14.09065 -14.07092 -13.68795 -13.45157 -13.11992 -13.06442 -12.86810 -12.60976 -12.54622 -12.47651 -12.34321 -12.27737 -12.12717 -11.94347 -11.80421 -11.48649 -11.31327 -11.22377 -11.15039 -10.94155 -10.64294 -9.99853 -9.84586 -9.09735 -8.51317 -6.24440 0.48594 0.53170 1.32254 1.35431 1.52004 1.75232 2.27144 2.34676 2.80084 3.04862 3.14068 3.79614 3.81479 3.88877 3.98373 4.00469 4.12820 4.16276 4.24911 4.38790 4.42743 4.53096 4.56476 4.70878 4.73499 4.76515 4.77872 4.81651 4.84133 4.90387 4.94715 5.01127 5.08197 5.10609 5.20728 5.20889 5.21511 5.32779 5.37112 5.37706 5.47545 5.52283 5.55186 5.63016 5.68392 5.69785 5.77762 5.87363 6.18102 6.66140 6.82744 7.35287 7.55520 8.59859 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.026772 B = 0.001864 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.618866 B =15020.036147 C =15289.052918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.105 4.105 5 C -0.074 4.074 6 H 0.062 0.938 7 C -0.150 4.150 8 C -0.134 4.134 9 C 0.508 3.492 10 O -0.579 6.579 11 N -0.720 5.720 12 C 0.182 3.818 13 C -0.173 4.173 14 C -0.046 4.046 15 C -0.191 4.191 16 C 0.128 3.872 17 O -0.242 6.242 18 C -0.400 4.400 19 H 0.083 0.917 20 C 0.011 3.989 21 N -0.921 5.921 22 Si 0.971 3.029 23 H -0.265 1.265 24 H -0.269 1.269 25 H -0.262 1.262 26 C -0.238 4.238 27 C -0.051 4.051 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.411 0.589 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.153 0.847 46 H 0.131 0.869 47 H 0.285 0.715 48 H 0.109 0.891 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.842 17.483 -21.853 28.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.203 4.203 4 C -0.142 4.142 5 C -0.093 4.093 6 H 0.081 0.919 7 C -0.207 4.207 8 C -0.173 4.173 9 C 0.296 3.704 10 O -0.460 6.460 11 N -0.372 5.372 12 C 0.059 3.941 13 C -0.174 4.174 14 C -0.064 4.064 15 C -0.211 4.211 16 C 0.079 3.921 17 O -0.149 6.149 18 C -0.476 4.476 19 H 0.100 0.900 20 C -0.188 4.188 21 N -0.561 5.561 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.194 1.194 25 H -0.187 1.187 26 C -0.257 4.257 27 C -0.070 4.070 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.247 0.753 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.171 0.829 46 H 0.149 0.851 47 H 0.095 0.905 48 H 0.127 0.873 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.540 17.000 -22.251 28.225 hybrid contribution 0.082 -0.504 1.199 1.304 sum 3.622 16.496 -21.052 26.989 Atomic orbital electron populations 1.21897 0.95704 1.01381 1.01736 1.21159 0.95633 0.96435 0.98593 1.21824 1.01111 0.95523 1.01828 1.21668 1.01362 0.93141 0.98049 1.20900 1.00425 0.94651 0.93356 0.91926 1.21935 0.99971 1.00784 0.97999 1.21828 1.04029 0.90588 1.00899 1.21294 0.78791 0.88840 0.81468 1.90653 1.42552 1.77371 1.35396 1.46238 1.57604 1.12403 1.20939 1.19859 0.98896 0.81482 0.93844 1.19562 0.96823 1.05450 0.95554 1.20945 0.95448 0.93831 0.96188 1.20523 1.00847 1.07589 0.92092 1.19740 0.93869 0.91615 0.86907 1.83520 1.49676 1.64405 1.17304 1.20706 1.03006 1.37583 0.86345 0.89992 1.25290 1.02329 0.97938 0.93263 1.69729 1.39102 1.46146 1.01144 0.85215 0.78268 0.78704 0.78529 1.18955 1.19386 1.18664 1.21272 0.98378 1.05927 1.00170 1.20915 0.99027 0.96006 0.91040 0.93332 0.92602 0.92720 0.91335 0.92352 0.92707 0.92600 0.91343 0.90993 0.92440 0.93366 0.92588 0.87187 0.86943 0.75295 0.90836 0.91748 0.82895 0.85066 0.90541 0.87286 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.95 71.98 0.64 -1.26 16 2 C -0.10 -1.16 2.78 -10.80 -0.03 -1.19 16 3 C -0.15 -1.42 9.19 71.98 0.66 -0.76 16 4 C -0.10 -1.17 4.15 30.59 0.13 -1.04 16 5 C -0.07 -1.12 1.90 -10.79 -0.02 -1.14 16 6 H 0.06 1.19 6.16 -2.39 -0.01 1.18 16 7 C -0.15 -2.53 8.70 71.98 0.63 -1.90 16 8 C -0.13 -1.83 5.17 29.85 0.15 -1.67 16 9 C 0.51 10.63 7.55 87.66 0.66 11.29 16 10 O -0.58 -16.57 13.96 -3.03 -0.04 -16.61 16 11 N -0.72 -14.09 5.55 -466.80 -2.59 -16.68 16 12 C 0.18 4.18 5.80 85.63 0.50 4.67 16 13 C -0.17 -4.66 5.25 -19.83 -0.10 -4.76 16 14 C -0.05 -1.25 9.69 22.25 0.22 -1.04 16 15 C -0.19 -6.70 9.99 22.39 0.22 -6.48 16 16 C 0.13 5.66 6.65 22.58 0.15 5.81 16 17 O -0.24 -12.66 8.59 -22.66 -0.19 -12.85 16 18 C -0.40 -22.92 9.95 67.92 0.68 -22.25 16 19 H 0.08 4.92 5.44 -2.91 -0.02 4.90 16 20 C 0.01 0.60 5.49 84.83 0.47 1.06 16 21 N -0.92 -53.95 13.96 21.61 0.30 -53.65 16 22 Si 0.97 44.27 28.62 68.60 1.96 46.23 16 23 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 25 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 26 C -0.24 -9.85 9.17 22.39 0.21 -9.64 16 27 C -0.05 -1.64 9.69 22.25 0.22 -1.42 16 28 H 0.05 0.73 6.46 -2.38 -0.02 0.71 16 29 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.86 6.34 -2.39 -0.02 0.84 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.05 1.09 5.95 -2.39 -0.01 1.07 16 39 H 0.06 0.88 6.46 -2.39 -0.02 0.87 16 40 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.41 6.69 8.46 -92.71 -0.78 5.91 16 43 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 44 H 0.06 1.57 8.08 -2.38 -0.02 1.55 16 45 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 46 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 47 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 48 H 0.11 5.03 5.64 -2.91 -0.02 5.02 16 49 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -66.84 393.07 4.96 -61.88 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.16 Total: 23.41 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 5.37 Total: -31.71 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -2.29 Total: -70.33 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.24 Total: -29.46 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.96 Total: 46.23 kcal Total: -66.84 4.96 -61.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067926091.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.484 kcal (2) G-P(sol) polarization free energy of solvation -66.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds