Wall clock time and date at job start Tue Mar 31 2020 12:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47210 * 2 1 4 4 N 1.46497 * 109.47165 * 120.00213 * 2 1 3 5 5 C 1.46496 * 120.00064 * 294.35894 * 4 2 1 6 6 C 1.50703 * 109.47225 * 269.99814 * 5 4 2 7 7 H 1.07996 * 119.99816 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99758 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00254 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99605 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47396 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47361 * 120.00506 * 10 8 6 13 13 H 1.48507 * 109.47062 * 239.99973 * 10 8 6 14 14 C 1.34783 * 119.99908 * 114.36337 * 4 2 1 15 15 O 1.21284 * 119.99679 * 184.89506 * 14 4 2 16 16 C 1.50698 * 119.99994 * 4.88416 * 14 4 2 17 17 H 1.08993 * 109.47410 * 322.55140 * 16 14 4 18 18 C 1.53005 * 109.46625 * 82.55435 * 16 14 4 19 19 C 1.53000 * 109.46958 * 202.54978 * 16 14 4 20 20 C 1.53006 * 109.46830 * 175.00524 * 19 16 14 21 21 O 1.42898 * 109.46988 * 180.02562 * 20 19 16 22 22 C 1.35901 * 116.99948 * 179.97438 * 21 20 19 23 23 C 1.38726 * 120.05588 * 359.72487 * 22 21 20 24 24 C 1.38146 * 119.94543 * 180.29837 * 23 22 21 25 25 C 1.38262 * 120.05551 * 359.95371 * 24 23 22 26 26 C 1.38271 * 120.11057 * 0.04513 * 25 24 23 27 27 C 1.38144 * 120.05649 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.47383 * 299.99748 * 1 2 3 29 29 H 1.09000 * 109.47265 * 59.99765 * 1 2 3 30 30 H 1.09001 * 109.47015 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.47329 * 240.00191 * 2 1 3 32 32 H 1.09004 * 109.47548 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47607 * 299.99932 * 3 2 1 34 34 H 1.09002 * 109.46948 * 60.00527 * 3 2 1 35 35 H 1.08995 * 109.47134 * 30.00299 * 5 4 2 36 36 H 1.09005 * 109.47129 * 150.00327 * 5 4 2 37 37 H 0.96995 * 120.00206 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.47145 * 65.43089 * 18 16 14 39 39 H 1.09004 * 109.47025 * 185.43305 * 18 16 14 40 40 H 1.09002 * 109.46901 * 305.42884 * 18 16 14 41 41 H 1.08992 * 109.47201 * 55.00783 * 19 16 14 42 42 H 1.09002 * 109.47027 * 295.00311 * 19 16 14 43 43 H 1.08996 * 109.47416 * 59.99872 * 20 19 16 44 44 H 1.09002 * 109.47141 * 299.99717 * 20 19 16 45 45 H 1.07998 * 120.02895 * 0.25231 * 23 22 21 46 46 H 1.08003 * 119.97195 * 179.97438 * 24 23 22 47 47 H 1.07997 * 119.94924 * 180.02562 * 25 24 23 48 48 H 1.08006 * 119.97192 * 179.97438 * 26 25 24 49 49 H 1.07999 * 120.02663 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7691 -0.1223 2.5231 6 6 2.9040 0.7958 2.8976 7 1 3.7282 0.9417 2.2152 8 6 2.8895 1.4503 4.1111 9 7 1.8856 1.2731 4.9419 10 14 4.2959 2.5889 4.5749 11 1 5.2944 2.6154 3.4761 12 1 3.7699 3.9593 4.7996 13 1 4.9418 2.0966 5.8182 14 6 2.6969 -1.8489 1.0756 15 8 3.0238 -2.4661 2.0672 16 6 3.0492 -2.3772 -0.2911 17 1 2.2303 -2.1745 -0.9812 18 6 4.3205 -1.6885 -0.7918 19 6 3.2853 -3.8866 -0.2091 20 6 3.5202 -4.4431 -1.6149 21 8 3.7402 -5.8530 -1.5384 22 6 3.9659 -6.5065 -2.7083 23 6 3.9699 -5.8062 -3.9059 24 6 4.1935 -6.4739 -5.0944 25 6 4.4141 -7.8388 -5.0911 26 6 4.4107 -8.5391 -3.8988 27 6 4.1872 -7.8761 -2.7076 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9562 0.8901 35 1 0.8361 0.4409 2.5078 36 1 1.6960 -0.9268 3.2551 37 1 1.8756 1.7332 5.7957 38 1 5.1602 -1.9693 -0.1561 39 1 4.5216 -1.9983 -1.8173 40 1 4.1852 -0.6074 -0.7586 41 1 2.4118 -4.3676 0.2308 42 1 4.1598 -4.0844 0.4108 43 1 4.3938 -3.9621 -2.0548 44 1 2.6458 -4.2453 -2.2348 45 1 3.7976 -4.7401 -3.9091 46 1 4.1962 -5.9292 -6.0270 47 1 4.5892 -8.3589 -6.0212 48 1 4.5830 -9.6053 -3.8988 49 1 4.1843 -8.4236 -1.7767 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073061018.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:25 Heat of formation + Delta-G solvation = -63.625102 kcal Electronic energy + Delta-G solvation = -26938.217386 eV Core-core repulsion = 23251.227195 eV Total energy + Delta-G solvation = -3686.990190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.32335 -39.52235 -37.67452 -36.07835 -34.77792 -32.78701 -31.29439 -30.84729 -30.37398 -28.81105 -27.41836 -26.62161 -25.18193 -23.51196 -22.71922 -22.17583 -21.38963 -20.51599 -18.59897 -17.68116 -17.04038 -16.44652 -16.32367 -16.14379 -15.78633 -15.16022 -14.70358 -14.61831 -14.35880 -13.86798 -13.73786 -13.59018 -13.49712 -13.12791 -12.92573 -12.85595 -12.36794 -12.17575 -12.01934 -11.86053 -11.78766 -11.65857 -11.48810 -11.32837 -11.15805 -11.08022 -10.90798 -10.87400 -10.82153 -10.63055 -10.51728 -10.29511 -10.00896 -9.52983 -9.25735 -8.80492 -8.42557 -8.40724 -7.63851 -6.03424 -4.06830 1.08750 1.21985 2.97825 3.28776 3.36011 3.38292 3.44117 3.55603 3.93439 4.44205 4.55758 4.63721 4.75350 4.81987 4.87008 4.96375 5.07579 5.13927 5.17412 5.24117 5.26667 5.30313 5.31672 5.40901 5.52884 5.56962 5.62770 5.75431 5.82861 5.88040 5.98859 5.99633 6.07544 6.13778 6.16178 6.25016 6.27874 6.30406 6.33198 6.38264 6.55595 6.59723 6.96190 7.11825 7.27040 7.49158 7.58186 7.93729 8.25696 8.45825 8.91947 9.11168 9.57428 11.04735 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.022216 B = 0.002478 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.022656 B =11296.908794 C =11686.716416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 C -0.155 4.155 4 N -0.591 5.591 5 C 0.245 3.755 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.059 3.941 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.512 3.488 15 O -0.541 6.541 16 C -0.110 4.110 17 H 0.089 0.911 18 C -0.144 4.144 19 C -0.099 4.099 20 C 0.060 3.940 21 O -0.312 6.312 22 C 0.135 3.865 23 C -0.211 4.211 24 C -0.081 4.081 25 C -0.165 4.165 26 C -0.082 4.082 27 C -0.156 4.156 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.128 0.872 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.127 0.873 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.517 -11.534 -21.371 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.025 3.975 3 C -0.213 4.213 4 N -0.323 5.323 5 C 0.126 3.874 6 C -0.556 4.556 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.534 5.534 10 Si 0.722 3.278 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.210 1.210 14 C 0.298 3.702 15 O -0.418 6.418 16 C -0.132 4.132 17 H 0.107 0.893 18 C -0.202 4.202 19 C -0.137 4.137 20 C -0.014 4.014 21 O -0.225 6.225 22 C 0.089 3.911 23 C -0.230 4.230 24 C -0.099 4.099 25 C -0.183 4.183 26 C -0.100 4.100 27 C -0.174 4.174 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.146 0.854 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.145 0.855 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.595 -11.841 -20.432 23.669 hybrid contribution 0.683 0.996 0.146 1.217 sum 2.278 -10.845 -20.286 23.116 Atomic orbital electron populations 1.22181 0.95836 1.01715 1.02381 1.21061 0.93866 0.94327 0.88198 1.22115 1.01531 0.95452 1.02160 1.48307 1.53548 1.21634 1.08818 1.19232 0.96533 0.94061 0.77544 1.21460 1.06330 1.25629 1.02229 0.92376 1.24931 0.96039 0.97084 0.96175 1.69937 1.30787 1.43187 1.09482 0.86503 0.82393 0.80326 0.78558 1.19852 1.21050 1.20973 1.20105 0.78691 0.81349 0.90018 1.90671 1.53681 1.58018 1.39465 1.21244 0.99892 0.95054 0.96990 0.89287 1.21808 0.96518 1.01214 1.00624 1.21315 1.04727 0.93307 0.94354 1.22962 1.00765 0.78213 0.99504 1.86098 1.85337 1.22643 1.28462 1.19099 0.94793 0.92156 0.85017 1.21316 1.08599 1.00646 0.92441 1.20956 0.97059 0.94496 0.97380 1.21048 1.04624 0.94501 0.98154 1.20971 0.97540 0.99776 0.91697 1.20502 1.05944 0.91623 0.99365 0.91465 0.92285 0.92987 0.90533 0.92522 0.93364 0.90168 0.94931 0.94003 0.92854 0.91634 0.92164 0.91490 0.90431 0.89620 0.91635 0.92062 0.85392 0.85899 0.86077 0.85489 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.26 37.16 0.34 -1.97 16 2 C 0.13 2.04 2.80 -67.94 -0.19 1.85 16 3 C -0.15 -2.48 8.34 37.16 0.31 -2.17 16 4 N -0.59 -12.10 2.38 -167.47 -0.40 -12.50 16 5 C 0.25 6.26 4.48 -5.19 -0.02 6.23 16 6 C -0.52 -14.16 7.85 -34.44 -0.27 -14.43 16 7 H 0.06 1.59 7.52 -52.49 -0.39 1.19 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 10 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 14 C 0.51 10.37 6.80 -10.98 -0.07 10.30 16 15 O -0.54 -13.48 15.72 5.55 0.09 -13.40 16 16 C -0.11 -1.57 1.86 -91.77 -0.17 -1.74 16 17 H 0.09 1.05 6.34 -51.93 -0.33 0.73 16 18 C -0.14 -1.83 8.58 37.16 0.32 -1.51 16 19 C -0.10 -1.37 4.47 -26.73 -0.12 -1.49 16 20 C 0.06 0.67 4.50 37.16 0.17 0.84 16 21 O -0.31 -4.02 10.14 -19.43 -0.20 -4.21 16 22 C 0.14 1.56 6.69 -39.22 -0.26 1.30 16 23 C -0.21 -2.08 9.04 -39.44 -0.36 -2.44 16 24 C -0.08 -0.69 10.04 -39.61 -0.40 -1.08 16 25 C -0.16 -1.34 10.04 -39.56 -0.40 -1.73 16 26 C -0.08 -0.69 10.04 -39.60 -0.40 -1.09 16 27 C -0.16 -1.61 9.99 -39.43 -0.39 -2.01 16 28 H 0.07 1.09 6.90 -51.93 -0.36 0.73 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.99 5.04 -51.92 -0.26 0.73 16 32 H 0.06 0.95 7.96 -51.93 -0.41 0.54 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.53 6.94 -51.93 -0.36 1.17 16 35 H 0.03 0.84 6.71 -51.93 -0.35 0.49 16 36 H 0.04 1.23 7.36 -51.93 -0.38 0.85 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.57 6.84 -51.93 -0.36 0.22 16 40 H 0.07 0.89 7.66 -51.93 -0.40 0.49 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.09 1.33 8.04 -51.93 -0.42 0.91 16 43 H 0.07 0.64 6.22 -51.93 -0.32 0.32 16 44 H 0.06 0.58 7.65 -51.93 -0.40 0.19 16 45 H 0.13 1.07 6.30 -52.49 -0.33 0.74 16 46 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 47 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 48 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 49 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 391.36 15.07 5.90 5.90 Total: -1.00 -32.84 391.36 -8.92 -41.76 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.01 Total: 0.98 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -2.01 Total: -9.57 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.34 Total: -38.09 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.11 Total: -17.61 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.84 -8.92 -41.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073061018.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.869 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds