Wall clock time and date at job start Tue Mar 31 2020 12:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47210 * 2 1 4 4 N 1.46497 * 109.47165 * 120.00213 * 2 1 3 5 5 C 1.46496 * 120.00064 * 294.35894 * 4 2 1 6 6 C 1.50703 * 109.47225 * 269.99814 * 5 4 2 7 7 H 1.07996 * 119.99816 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99758 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00254 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99605 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47396 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47361 * 120.00506 * 10 8 6 13 13 H 1.48507 * 109.47062 * 239.99973 * 10 8 6 14 14 C 1.34783 * 119.99908 * 114.36337 * 4 2 1 15 15 O 1.21284 * 119.99679 * 184.89506 * 14 4 2 16 16 C 1.50698 * 119.99994 * 4.88416 * 14 4 2 17 17 H 1.08993 * 109.47410 * 322.55140 * 16 14 4 18 18 C 1.53005 * 109.46625 * 82.55435 * 16 14 4 19 19 C 1.53000 * 109.46958 * 202.54978 * 16 14 4 20 20 C 1.53006 * 109.46830 * 175.00524 * 19 16 14 21 21 O 1.42898 * 109.46988 * 180.02562 * 20 19 16 22 22 C 1.35901 * 116.99948 * 179.97438 * 21 20 19 23 23 C 1.38726 * 120.05588 * 359.72487 * 22 21 20 24 24 C 1.38146 * 119.94543 * 180.29837 * 23 22 21 25 25 C 1.38262 * 120.05551 * 359.95371 * 24 23 22 26 26 C 1.38271 * 120.11057 * 0.04513 * 25 24 23 27 27 C 1.38144 * 120.05649 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.47383 * 299.99748 * 1 2 3 29 29 H 1.09000 * 109.47265 * 59.99765 * 1 2 3 30 30 H 1.09001 * 109.47015 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.47329 * 240.00191 * 2 1 3 32 32 H 1.09004 * 109.47548 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47607 * 299.99932 * 3 2 1 34 34 H 1.09002 * 109.46948 * 60.00527 * 3 2 1 35 35 H 1.08995 * 109.47134 * 30.00299 * 5 4 2 36 36 H 1.09005 * 109.47129 * 150.00327 * 5 4 2 37 37 H 0.96995 * 120.00206 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.47145 * 65.43089 * 18 16 14 39 39 H 1.09004 * 109.47025 * 185.43305 * 18 16 14 40 40 H 1.09002 * 109.46901 * 305.42884 * 18 16 14 41 41 H 1.08992 * 109.47201 * 55.00783 * 19 16 14 42 42 H 1.09002 * 109.47027 * 295.00311 * 19 16 14 43 43 H 1.08996 * 109.47416 * 59.99872 * 20 19 16 44 44 H 1.09002 * 109.47141 * 299.99717 * 20 19 16 45 45 H 1.07998 * 120.02895 * 0.25231 * 23 22 21 46 46 H 1.08003 * 119.97195 * 179.97438 * 24 23 22 47 47 H 1.07997 * 119.94924 * 180.02562 * 25 24 23 48 48 H 1.08006 * 119.97192 * 179.97438 * 26 25 24 49 49 H 1.07999 * 120.02663 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7691 -0.1223 2.5231 6 6 2.9040 0.7958 2.8976 7 1 3.7282 0.9417 2.2152 8 6 2.8895 1.4503 4.1111 9 7 1.8856 1.2731 4.9419 10 14 4.2959 2.5889 4.5749 11 1 5.2944 2.6154 3.4761 12 1 3.7699 3.9593 4.7996 13 1 4.9418 2.0966 5.8182 14 6 2.6969 -1.8489 1.0756 15 8 3.0238 -2.4661 2.0672 16 6 3.0492 -2.3772 -0.2911 17 1 2.2303 -2.1745 -0.9812 18 6 4.3205 -1.6885 -0.7918 19 6 3.2853 -3.8866 -0.2091 20 6 3.5202 -4.4431 -1.6149 21 8 3.7402 -5.8530 -1.5384 22 6 3.9659 -6.5065 -2.7083 23 6 3.9699 -5.8062 -3.9059 24 6 4.1935 -6.4739 -5.0944 25 6 4.4141 -7.8388 -5.0911 26 6 4.4107 -8.5391 -3.8988 27 6 4.1872 -7.8761 -2.7076 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9562 0.8901 35 1 0.8361 0.4409 2.5078 36 1 1.6960 -0.9268 3.2551 37 1 1.8756 1.7332 5.7957 38 1 5.1602 -1.9693 -0.1561 39 1 4.5216 -1.9983 -1.8173 40 1 4.1852 -0.6074 -0.7586 41 1 2.4118 -4.3676 0.2308 42 1 4.1598 -4.0844 0.4108 43 1 4.3938 -3.9621 -2.0548 44 1 2.6458 -4.2453 -2.2348 45 1 3.7976 -4.7401 -3.9091 46 1 4.1962 -5.9292 -6.0270 47 1 4.5892 -8.3589 -6.0212 48 1 4.5830 -9.6053 -3.8988 49 1 4.1843 -8.4236 -1.7767 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073061018.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:24 Heat of formation + Delta-G solvation = -82.425866 kcal Electronic energy + Delta-G solvation = -26939.032648 eV Core-core repulsion = 23251.227195 eV Total energy + Delta-G solvation = -3687.805452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.28612 -40.86326 -38.46416 -37.62004 -36.05478 -34.84234 -32.41856 -31.96583 -31.20290 -29.92769 -29.10029 -27.88884 -26.34376 -25.12977 -23.64682 -23.17561 -22.56298 -21.72485 -19.58248 -18.95660 -18.59512 -18.38267 -17.17764 -17.01416 -16.81921 -16.58630 -16.18226 -16.06003 -15.32675 -15.14825 -14.92269 -14.77874 -14.40862 -14.28857 -14.08911 -13.96978 -13.89611 -13.44687 -13.32374 -13.25486 -13.03333 -12.84235 -12.76068 -12.55659 -12.49970 -12.41212 -12.25050 -12.23500 -12.15298 -12.01508 -11.69129 -11.59564 -11.53260 -11.42618 -10.62540 -10.44047 -9.91048 -9.40836 -9.13068 -8.19861 -6.31856 0.43546 0.53427 1.34577 1.37217 1.48202 1.82410 2.07159 2.36626 2.52549 2.89222 3.09991 3.52059 3.78387 3.90859 3.92688 3.96977 4.02860 4.19096 4.23147 4.28412 4.31373 4.33578 4.37770 4.47875 4.53982 4.58988 4.75325 4.80826 4.86343 4.87055 4.90048 4.92074 5.04281 5.06645 5.12572 5.13147 5.20715 5.25630 5.29755 5.41864 5.44861 5.52462 5.60335 5.64363 5.66019 5.90276 5.92139 6.10938 6.51162 6.74749 6.85233 7.31488 7.51325 8.87780 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.022216 B = 0.002478 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.022656 B =11296.908794 C =11686.716416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.122 3.878 3 C -0.150 4.150 4 N -0.596 5.596 5 C 0.263 3.737 6 C -0.521 4.521 7 H 0.056 0.944 8 C 0.003 3.997 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.265 1.265 12 H -0.271 1.271 13 H -0.286 1.286 14 C 0.499 3.501 15 O -0.602 6.602 16 C -0.094 4.094 17 H 0.127 0.873 18 C -0.142 4.142 19 C -0.094 4.094 20 C 0.067 3.933 21 O -0.339 6.339 22 C 0.107 3.893 23 C -0.218 4.218 24 C -0.085 4.085 25 C -0.166 4.166 26 C -0.085 4.085 27 C -0.178 4.178 28 H 0.035 0.965 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.119 0.881 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.040 0.960 35 H 0.023 0.977 36 H -0.011 1.011 37 H 0.264 0.736 38 H 0.044 0.956 39 H 0.105 0.895 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.144 0.856 46 H 0.149 0.851 47 H 0.147 0.853 48 H 0.149 0.851 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.245 -11.007 -25.955 28.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.020 3.980 3 C -0.207 4.207 4 N -0.326 5.326 5 C 0.142 3.858 6 C -0.560 4.560 7 H 0.074 0.926 8 C -0.195 4.195 9 N -0.572 5.572 10 Si 0.787 3.213 11 H -0.189 1.189 12 H -0.196 1.196 13 H -0.212 1.212 14 C 0.288 3.712 15 O -0.484 6.484 16 C -0.115 4.115 17 H 0.145 0.855 18 C -0.199 4.199 19 C -0.132 4.132 20 C -0.007 4.007 21 O -0.253 6.253 22 C 0.062 3.938 23 C -0.236 4.236 24 C -0.103 4.103 25 C -0.184 4.184 26 C -0.103 4.103 27 C -0.196 4.196 28 H 0.054 0.946 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.137 0.863 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.059 0.941 35 H 0.040 0.960 36 H 0.007 0.993 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.162 0.838 46 H 0.167 0.833 47 H 0.165 0.835 48 H 0.167 0.833 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.311 -11.299 -25.074 27.599 hybrid contribution 0.422 0.747 1.530 1.755 sum 2.734 -10.552 -23.544 25.945 Atomic orbital electron populations 1.22160 0.94530 1.02170 1.02814 1.21506 0.94968 0.94247 0.87327 1.22055 1.00845 0.95534 1.02311 1.48361 1.53608 1.22123 1.08504 1.18624 0.95785 0.91841 0.79553 1.21670 1.06471 1.25525 1.02320 0.92567 1.25832 0.98622 0.98820 0.96215 1.70065 1.32763 1.44409 1.09963 0.85450 0.79225 0.78595 0.78064 1.18861 1.19635 1.21232 1.21306 0.77290 0.80576 0.92039 1.90636 1.55838 1.59699 1.42218 1.21211 1.02062 0.94962 0.93263 0.85502 1.21853 0.94527 1.00840 1.02690 1.21187 1.02668 0.93221 0.96146 1.22901 1.02632 0.77823 0.97338 1.86042 1.86049 1.23416 1.29840 1.19372 0.96548 0.92673 0.85206 1.21554 1.08404 1.01528 0.92144 1.21341 0.96061 0.94895 0.97969 1.21445 1.03300 0.94726 0.98919 1.21284 0.96777 1.00983 0.91254 1.20719 1.06961 0.91782 1.00180 0.94552 0.88263 0.92569 0.86298 0.93512 0.89079 0.94069 0.95954 0.99328 0.92685 0.93704 0.87596 0.91684 0.92347 0.92395 0.89746 0.89644 0.83797 0.83292 0.83534 0.83334 0.85647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 9.26 71.98 0.67 -3.53 16 2 C 0.12 3.59 2.80 44.99 0.13 3.72 16 3 C -0.15 -4.52 8.34 71.98 0.60 -3.92 16 4 N -0.60 -24.88 2.38 -802.15 -1.91 -26.80 16 5 C 0.26 14.24 4.48 85.63 0.38 14.63 16 6 C -0.52 -29.62 7.85 25.60 0.20 -29.41 16 7 H 0.06 3.14 7.52 -2.91 -0.02 3.12 16 8 C 0.00 0.19 5.46 84.66 0.46 0.65 16 9 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 10 Si 0.96 45.27 29.54 68.60 2.03 47.29 16 11 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 14 C 0.50 20.74 6.80 87.66 0.60 21.34 16 15 O -0.60 -32.09 15.72 -3.04 -0.05 -32.14 16 16 C -0.09 -2.52 1.86 -11.54 -0.02 -2.54 16 17 H 0.13 2.46 6.34 -2.39 -0.02 2.44 16 18 C -0.14 -3.21 8.58 71.98 0.62 -2.59 16 19 C -0.09 -2.58 4.47 30.60 0.14 -2.45 16 20 C 0.07 1.35 4.50 71.98 0.32 1.67 16 21 O -0.34 -8.60 10.14 -92.44 -0.94 -9.54 16 22 C 0.11 2.36 6.69 22.50 0.15 2.51 16 23 C -0.22 -3.70 9.04 22.36 0.20 -3.49 16 24 C -0.08 -1.15 10.04 22.25 0.22 -0.93 16 25 C -0.17 -2.18 10.04 22.28 0.22 -1.95 16 26 C -0.09 -1.29 10.04 22.26 0.22 -1.07 16 27 C -0.18 -3.60 9.99 22.37 0.22 -3.38 16 28 H 0.04 1.18 6.90 -2.39 -0.02 1.16 16 29 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.12 2.52 5.04 -2.38 -0.01 2.51 16 32 H 0.05 1.49 7.96 -2.38 -0.02 1.47 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.04 1.56 6.94 -2.39 -0.02 1.55 16 35 H 0.02 1.24 6.71 -2.39 -0.02 1.23 16 36 H -0.01 -0.73 7.36 -2.38 -0.02 -0.75 16 37 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.11 1.47 6.84 -2.39 -0.02 1.45 16 40 H 0.06 1.52 7.66 -2.39 -0.02 1.51 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.06 1.89 8.04 -2.39 -0.02 1.87 16 43 H 0.08 1.35 6.22 -2.39 -0.01 1.34 16 44 H 0.09 1.30 7.65 -2.39 -0.02 1.28 16 45 H 0.14 1.84 6.30 -2.91 -0.02 1.83 16 46 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 47 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 48 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 49 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -79.07 391.36 5.67 -73.39 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.92 Total: 15.32 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 5.34 Total: -10.76 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -1.63 Total: -83.58 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -0.98 Total: -41.67 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -79.07 5.67 -73.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073061018.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.033 kcal (2) G-P(sol) polarization free energy of solvation -79.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds