Wall clock time and date at job start Tue Mar 31 2020 13:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35910 * 117.00077 * 2 1 4 4 C 1.38755 * 120.05301 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.94011 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05511 * 359.74262 * 5 4 3 7 7 C 1.38244 * 120.11254 * 0.50994 * 6 5 4 8 8 C 1.50701 * 119.97083 * 179.76489 * 7 6 5 9 9 H 1.09002 * 109.47060 * 179.72740 * 8 7 6 10 10 C 1.53002 * 109.47419 * 299.72821 * 8 7 6 11 11 C 1.52997 * 109.47212 * 59.72685 * 8 7 6 12 12 C 1.50698 * 109.47721 * 174.99887 * 11 8 7 13 13 O 1.21287 * 119.99375 * 359.97438 * 12 11 8 14 14 N 1.34768 * 120.00550 * 180.02562 * 12 11 8 15 15 C 1.46504 * 119.99870 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47127 * 90.00134 * 15 14 12 17 17 H 1.07998 * 120.00301 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00106 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99697 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00343 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46915 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47033 * 119.99920 * 20 18 16 23 23 H 1.48500 * 109.46778 * 240.00132 * 20 18 16 24 24 C 1.46498 * 120.00161 * 359.97438 * 14 12 11 25 25 C 1.53006 * 109.46907 * 119.99994 * 24 14 12 26 26 C 1.52995 * 109.47777 * 240.00606 * 24 14 12 27 27 C 1.38164 * 120.05507 * 359.49132 * 7 6 5 28 28 H 1.09007 * 109.46798 * 59.99727 * 1 2 3 29 29 H 1.08997 * 109.46816 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47112 * 299.99914 * 1 2 3 31 31 H 1.08003 * 120.02764 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.96727 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.93975 * 180.27889 * 6 5 4 34 34 H 1.08996 * 109.47407 * 180.02562 * 10 8 7 35 35 H 1.09000 * 109.46986 * 300.00096 * 10 8 7 36 36 H 1.09002 * 109.47075 * 59.99368 * 10 8 7 37 37 H 1.09000 * 109.47325 * 294.99852 * 11 8 7 38 38 H 1.09008 * 109.47017 * 54.99761 * 11 8 7 39 39 H 1.09006 * 109.47049 * 209.99628 * 15 14 12 40 40 H 1.08989 * 109.47381 * 329.99549 * 15 14 12 41 41 H 0.97001 * 119.99671 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.47110 * 0.02562 * 24 14 12 43 43 H 1.09003 * 109.46697 * 60.00407 * 25 24 14 44 44 H 1.09002 * 109.46875 * 180.02562 * 25 24 14 45 45 H 1.08995 * 109.47371 * 300.00232 * 25 24 14 46 46 H 1.09000 * 109.47332 * 59.99426 * 26 24 14 47 47 H 1.08996 * 109.47395 * 180.02562 * 26 24 14 48 48 H 1.09003 * 109.46840 * 300.00213 * 26 24 14 49 49 H 1.08002 * 120.02839 * 180.27290 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6757 0.0064 7 6 4.0560 2.5171 0.0007 8 6 5.5608 2.5982 0.0012 9 1 5.9789 1.5915 0.0010 10 6 6.0318 3.3462 -1.2477 11 6 6.0309 3.3454 1.2508 12 6 7.5363 3.3201 1.3149 13 8 8.1707 2.7591 0.4467 14 7 8.1775 3.9199 2.3373 15 6 9.6410 3.8956 2.3992 16 6 10.1942 5.0977 1.6781 17 1 9.5229 5.8084 1.2193 18 6 11.5575 5.2902 1.6042 19 7 12.3751 4.4244 2.1625 20 14 12.2434 6.7799 0.7098 21 1 11.1234 7.5933 0.1719 22 1 13.0423 7.6004 1.6552 23 1 13.1097 6.3298 -0.4092 24 6 7.4111 4.5971 3.3862 25 6 7.7123 3.9470 4.7382 26 6 7.8044 6.0749 3.4320 27 6 3.4311 1.2848 0.0001 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2128 2.3204 0.0005 32 1 1.3340 4.5113 0.0019 33 1 3.7922 4.6381 0.0114 34 1 7.1202 3.4045 -1.2475 35 1 5.6969 2.8138 -2.1379 36 1 5.6136 4.3528 -1.2475 37 1 5.6865 4.3787 1.2073 38 1 5.6212 2.8629 2.1383 39 1 9.9610 3.9178 3.4410 40 1 10.0097 2.9861 1.9252 41 1 13.3342 4.5601 2.1108 42 1 6.3460 4.5108 3.1712 43 1 8.7774 4.0330 4.9534 44 1 7.1417 4.4506 5.5186 45 1 7.4320 2.8942 4.7056 46 1 7.5899 6.5380 2.4689 47 1 7.2345 6.5786 4.2127 48 1 8.8695 6.1609 3.6472 49 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084591178.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:34 Heat of formation + Delta-G solvation = -62.989940 kcal Electronic energy + Delta-G solvation = -27287.249434 eV Core-core repulsion = 23600.286787 eV Total energy + Delta-G solvation = -3686.962647 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.39201 -39.35959 -37.92298 -36.06484 -34.43913 -32.78215 -30.96097 -30.79120 -29.54977 -28.31342 -27.52264 -26.75559 -26.36120 -23.54809 -22.70022 -22.48273 -21.22572 -20.12195 -17.93054 -17.71287 -16.61349 -16.42289 -16.37394 -16.04961 -15.94758 -15.16591 -14.80927 -14.50459 -14.18140 -13.87797 -13.62054 -13.46159 -13.22653 -13.16595 -12.82292 -12.59347 -12.40853 -12.29396 -12.13883 -11.75289 -11.65345 -11.53810 -11.36290 -11.26912 -11.20468 -10.94789 -10.88502 -10.76537 -10.65401 -10.59087 -10.47350 -10.30659 -9.95158 -9.48980 -8.91706 -8.72148 -8.39259 -8.29954 -7.58280 -6.00351 -4.03240 1.22454 1.35466 3.05989 3.31013 3.38847 3.41651 3.51084 3.64894 3.98842 4.47258 4.61252 4.66926 4.84567 4.85197 4.93187 5.04392 5.16502 5.21145 5.26889 5.28794 5.33708 5.36579 5.40038 5.54403 5.61083 5.70465 5.73054 5.86228 5.91182 6.01091 6.03917 6.16889 6.17735 6.21932 6.29211 6.35484 6.35826 6.39599 6.60030 6.63162 6.68554 6.80066 6.98778 7.17072 7.23935 7.52395 7.63653 7.97102 8.29755 8.51961 8.96440 9.17977 9.60887 11.07788 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020526 B = 0.002846 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.780792 B = 9835.158561 C =10163.449653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.125 3.875 4 C -0.217 4.217 5 C -0.080 4.080 6 C -0.150 4.150 7 C -0.028 4.028 8 C -0.036 4.036 9 H 0.087 0.913 10 C -0.148 4.148 11 C -0.133 4.133 12 C 0.506 3.494 13 O -0.539 6.539 14 N -0.594 5.594 15 C 0.245 3.755 16 C -0.515 4.515 17 H 0.058 0.942 18 C 0.059 3.941 19 N -0.896 5.896 20 Si 0.894 3.106 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.133 3.867 25 C -0.162 4.162 26 C -0.157 4.157 27 C -0.148 4.148 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.033 0.967 40 H 0.041 0.959 41 H 0.261 0.739 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.047 0.953 48 H 0.080 0.920 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.738 -2.889 -0.036 23.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.080 3.920 4 C -0.236 4.236 5 C -0.098 4.098 6 C -0.168 4.168 7 C -0.029 4.029 8 C -0.055 4.055 9 H 0.105 0.895 10 C -0.205 4.205 11 C -0.173 4.173 12 C 0.293 3.707 13 O -0.418 6.418 14 N -0.326 5.326 15 C 0.126 3.874 16 C -0.554 4.554 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.535 5.535 20 Si 0.722 3.278 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 C 0.028 3.972 25 C -0.220 4.220 26 C -0.215 4.215 27 C -0.167 4.167 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.099 0.901 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.105 -3.414 -0.450 23.360 hybrid contribution 0.093 1.065 -0.365 1.130 sum -23.012 -2.349 -0.816 23.146 Atomic orbital electron populations 1.23023 0.78633 1.03765 1.01234 1.86077 1.21183 1.27148 1.88861 1.19004 0.92271 0.84031 0.96678 1.21163 0.99714 0.92498 1.10234 1.20900 0.94589 0.96828 0.97492 1.20972 0.93492 0.98400 1.03974 1.19815 0.95780 0.92011 0.95254 1.19915 0.88831 1.01455 0.95276 0.89453 1.21955 1.04160 0.98794 0.95561 1.21772 0.94550 1.02068 0.98896 1.20270 0.89116 0.79323 0.82036 1.90632 1.68478 1.44839 1.37809 1.48337 1.09377 1.52427 1.22416 1.19225 0.72549 0.98208 0.97411 1.21470 0.91449 1.08047 1.34451 0.92374 1.24933 0.96959 0.96657 0.95717 1.69945 1.03135 1.35637 1.44806 0.86511 0.79011 0.82742 0.79565 1.19842 1.21097 1.21002 1.20987 0.95055 0.93040 0.88094 1.22160 1.03164 1.00262 0.96423 1.22137 1.03876 0.94563 1.00900 1.20375 0.91167 0.98412 1.06727 0.92782 0.88382 0.92741 0.85857 0.85948 0.85753 0.89398 0.93170 0.93290 0.89447 0.89670 0.94922 0.94097 0.92910 0.90720 0.91332 0.92359 0.92951 0.92777 0.93359 0.90097 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.50 10.50 -19.46 -0.20 -3.71 16 3 C 0.13 1.46 6.69 -39.22 -0.26 1.20 16 4 C -0.22 -2.18 9.04 -39.43 -0.36 -2.54 16 5 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 6 C -0.15 -1.69 8.76 -39.56 -0.35 -2.03 16 7 C -0.03 -0.36 4.78 -104.65 -0.50 -0.86 16 8 C -0.04 -0.51 2.21 -91.77 -0.20 -0.72 16 9 H 0.09 1.35 7.69 -51.93 -0.40 0.95 16 10 C -0.15 -2.21 8.75 37.16 0.33 -1.89 16 11 C -0.13 -1.96 3.22 -27.89 -0.09 -2.05 16 12 C 0.51 10.21 7.39 -10.99 -0.08 10.13 16 13 O -0.54 -13.02 13.55 5.55 0.08 -12.94 16 14 N -0.59 -12.27 2.39 -167.47 -0.40 -12.67 16 15 C 0.25 6.27 4.60 -5.19 -0.02 6.25 16 16 C -0.52 -14.18 7.83 -34.44 -0.27 -14.45 16 17 H 0.06 1.61 7.63 -52.49 -0.40 1.21 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 20 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 C 0.13 2.15 3.17 -67.93 -0.22 1.94 16 25 C -0.16 -2.39 9.17 37.16 0.34 -2.05 16 26 C -0.16 -2.57 8.47 37.15 0.31 -2.26 16 27 C -0.15 -1.86 9.61 -39.44 -0.38 -2.24 16 28 H 0.05 0.30 7.66 -51.93 -0.40 -0.09 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 31 H 0.12 0.94 6.30 -52.48 -0.33 0.61 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.12 1.28 7.16 -52.48 -0.38 0.91 16 34 H 0.09 1.62 5.95 -51.93 -0.31 1.31 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.66 7.40 -51.93 -0.38 0.28 16 37 H 0.09 1.16 7.20 -51.93 -0.37 0.79 16 38 H 0.08 1.13 7.79 -51.92 -0.40 0.72 16 39 H 0.03 0.85 6.43 -51.93 -0.33 0.52 16 40 H 0.04 1.20 7.42 -51.94 -0.39 0.81 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.07 1.01 5.77 -51.93 -0.30 0.71 16 43 H 0.07 1.15 6.66 -51.93 -0.35 0.81 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 49 H 0.13 1.59 7.94 -52.49 -0.42 1.17 16 LS Contribution 388.35 15.07 5.85 5.85 Total: -1.00 -32.46 388.35 -8.22 -40.68 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -8.01 Total: 1.77 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -1.25 Total: -10.02 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.34 Total: -38.39 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.13 Total: -16.65 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.46 -8.22 -40.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084591178.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.307 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds