Wall clock time and date at job start Tue Mar 31 2020 12:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46811 * 2 1 4 4 C 1.52998 * 109.47110 * 120.00016 * 2 1 3 5 5 C 1.53005 * 109.47030 * 173.74718 * 4 2 1 6 6 H 1.09003 * 109.47167 * 56.62940 * 5 4 2 7 7 C 1.52995 * 109.47081 * 176.62776 * 5 4 2 8 8 O 1.42896 * 109.46815 * 296.62979 * 5 4 2 9 9 C 1.42908 * 114.00027 * 150.00117 * 8 5 4 10 10 C 1.52993 * 109.47303 * 179.97438 * 9 8 5 11 11 C 1.50703 * 109.47063 * 179.97438 * 10 9 8 12 12 O 1.21274 * 119.99985 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99757 * 179.97438 * 11 10 9 14 14 C 1.39242 * 119.99755 * 175.25030 * 13 11 10 15 15 C 1.39475 * 119.83304 * 215.31669 * 14 13 11 16 16 C 1.36378 * 120.16480 * 179.76168 * 15 14 13 17 17 C 1.40864 * 119.83105 * 0.51881 * 16 15 14 18 18 C 1.41156 * 120.16385 * 179.72181 * 17 16 15 19 19 H 1.08000 * 119.99316 * 214.46999 * 18 17 16 20 20 C 1.39902 * 120.00282 * 34.47417 * 18 17 16 21 21 N 1.30871 * 119.99674 * 356.45196 * 20 18 17 22 22 Si 1.86793 * 119.99954 * 176.45859 * 20 18 17 23 23 H 1.48507 * 109.47511 * 89.99675 * 22 20 18 24 24 H 1.48500 * 109.47259 * 209.99627 * 22 20 18 25 25 H 1.48505 * 109.47358 * 329.99502 * 22 20 18 26 26 C 1.40869 * 119.67050 * 359.73651 * 17 16 15 27 27 C 1.36377 * 119.82894 * 0.02562 * 26 17 16 28 28 H 1.09006 * 109.47243 * 304.95020 * 1 2 3 29 29 H 1.08996 * 109.47392 * 64.95863 * 1 2 3 30 30 H 1.09007 * 109.47040 * 184.95768 * 1 2 3 31 31 H 1.08994 * 109.47223 * 240.00272 * 2 1 3 32 32 H 1.09002 * 109.46787 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47452 * 300.00666 * 3 2 1 34 34 H 1.09003 * 109.47198 * 60.00235 * 3 2 1 35 35 H 1.09003 * 109.47166 * 53.75187 * 4 2 1 36 36 H 1.08995 * 109.47352 * 293.74998 * 4 2 1 37 37 H 1.09001 * 109.47133 * 179.97438 * 7 5 4 38 38 H 1.08998 * 109.47558 * 300.00218 * 7 5 4 39 39 H 1.09003 * 109.46986 * 60.00053 * 7 5 4 40 40 H 1.08999 * 109.47064 * 59.99699 * 9 8 5 41 41 H 1.09000 * 109.46766 * 300.00073 * 9 8 5 42 42 H 1.09003 * 109.47627 * 59.99841 * 10 9 8 43 43 H 1.09000 * 109.47416 * 299.99855 * 10 9 8 44 44 H 0.96996 * 120.00348 * 355.25417 * 13 11 10 45 45 H 1.07998 * 119.91415 * 0.02562 * 15 14 13 46 46 H 1.08000 * 120.08247 * 180.25739 * 16 15 14 47 47 H 0.97005 * 119.99916 * 180.02562 * 21 20 18 48 48 H 1.07997 * 120.08568 * 179.97438 * 26 17 16 49 49 H 1.08002 * 119.91500 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5620 -0.8587 1.1731 6 1 4.0105 0.1277 1.0552 7 6 4.0807 -1.5042 2.4596 8 8 3.9109 -1.6774 0.0551 9 6 5.1770 -1.3588 -0.5260 10 6 5.4457 -2.2933 -1.7071 11 6 6.7806 -1.9569 -2.3203 12 8 7.4512 -1.0585 -1.8577 13 7 7.2297 -2.6552 -3.3821 14 6 8.4151 -2.2818 -4.0100 15 6 8.5410 -2.4188 -5.3922 16 6 9.6972 -2.0507 -6.0148 17 6 10.7697 -1.5412 -5.2569 18 6 11.9717 -1.1636 -5.8933 19 1 12.9169 -1.3072 -5.3909 20 6 11.9387 -0.6032 -7.1748 21 7 10.8006 -0.4930 -7.8116 22 14 13.5188 -0.0125 -7.9769 23 1 14.1279 -1.1250 -8.7493 24 1 13.2172 1.1180 -8.8914 25 1 14.4677 0.4393 -6.9277 26 6 10.6368 -1.4108 -3.8605 27 6 9.4727 -1.7786 -3.2526 28 1 -0.3634 0.5887 0.8424 29 1 -0.3634 0.4350 -0.9310 30 1 -0.3633 -1.0239 0.0888 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.5882 -1.7116 1.3069 36 1 1.7709 -0.1469 2.1357 37 1 5.1649 -1.6026 2.4052 38 1 3.8145 -0.8798 3.3124 39 1 3.6322 -2.4907 2.5776 40 1 5.9611 -1.4831 0.2209 41 1 5.1673 -0.3260 -0.8742 42 1 4.6617 -2.1695 -2.4542 43 1 5.4555 -3.3260 -1.3586 44 1 6.7271 -3.4177 -3.7088 45 1 7.7194 -2.8135 -5.9715 46 1 9.7918 -2.1535 -7.0858 47 1 10.7777 -0.1048 -8.7002 48 1 11.4549 -1.0214 -3.2729 49 1 9.3695 -1.6795 -2.1821 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087004636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:48 Heat of formation + Delta-G solvation = -91.829742 kcal Electronic energy + Delta-G solvation = -25964.516912 eV Core-core repulsion = 22276.303677 eV Total energy + Delta-G solvation = -3688.213235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.80454 -38.87758 -37.30642 -36.08797 -34.45419 -32.99258 -32.51468 -30.71921 -29.57920 -28.73689 -27.43954 -26.93563 -25.27917 -23.48074 -21.77684 -21.47916 -20.68519 -20.19217 -19.52666 -17.44823 -17.20599 -16.63460 -16.14893 -15.94481 -15.50212 -15.17585 -14.87641 -14.57242 -14.07577 -13.87357 -13.69744 -13.40143 -13.13218 -13.01916 -12.65653 -12.62606 -12.48912 -12.41243 -12.15405 -12.06406 -11.80767 -11.66828 -11.48716 -11.36209 -11.28974 -11.14855 -10.97960 -10.86998 -10.80153 -10.72806 -10.49382 -10.03420 -9.60757 -9.49687 -9.43515 -9.13234 -8.88083 -7.55214 -6.87645 -6.62377 -4.34621 2.54046 3.01264 3.08039 3.09831 3.13679 3.19987 3.38464 3.97207 4.04331 4.42496 4.63727 4.69413 4.69518 4.86462 4.97918 4.99116 5.04705 5.12517 5.24229 5.34715 5.37981 5.43326 5.50479 5.55793 5.57595 5.65659 5.66861 5.72272 5.74764 5.79573 5.83307 5.94949 6.01887 6.10134 6.19093 6.19917 6.44255 6.75241 6.91577 7.06517 7.13579 7.20428 7.29267 7.63305 7.73987 7.86153 8.05796 8.25544 8.31025 8.61707 8.73531 8.92318 8.99623 10.28773 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.023969 B = 0.002019 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.909006 B =13864.092426 C =14192.434711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.110 4.110 5 C 0.085 3.915 6 H 0.064 0.936 7 C -0.176 4.176 8 O -0.383 6.383 9 C 0.079 3.921 10 C -0.137 4.137 11 C 0.502 3.498 12 O -0.534 6.534 13 N -0.651 5.651 14 C 0.002 3.998 15 C -0.120 4.120 16 C -0.142 4.142 17 C 0.100 3.900 18 C -0.460 4.460 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.812 5.812 22 Si 0.916 3.084 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.206 4.206 27 C -0.085 4.085 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.397 0.603 45 H 0.091 0.909 46 H 0.132 0.868 47 H 0.278 0.722 48 H 0.096 0.904 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.212 -1.895 13.084 21.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.208 4.208 4 C -0.147 4.147 5 C 0.027 3.973 6 H 0.081 0.919 7 C -0.234 4.234 8 O -0.303 6.303 9 C 0.002 3.998 10 C -0.177 4.177 11 C 0.289 3.711 12 O -0.412 6.412 13 N -0.293 5.293 14 C -0.090 4.090 15 C -0.141 4.141 16 C -0.162 4.162 17 C 0.097 3.903 18 C -0.491 4.491 19 H 0.094 0.906 20 C -0.146 4.146 21 N -0.439 5.439 22 Si 0.741 3.259 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.226 4.226 27 C -0.105 4.105 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.230 0.770 45 H 0.109 0.891 46 H 0.149 0.851 47 H 0.089 0.911 48 H 0.114 0.886 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.964 -1.294 13.124 21.487 hybrid contribution 0.520 0.191 -0.549 0.780 sum -16.444 -1.103 12.575 20.730 Atomic orbital electron populations 1.21837 0.95383 1.01575 1.01549 1.21100 0.95414 0.96162 0.99043 1.21915 1.01194 0.96060 1.01609 1.21759 0.93618 1.01163 0.98178 1.22135 0.95443 0.93808 0.85929 0.91852 1.22301 1.01810 1.01789 0.97473 1.87824 1.36791 1.59149 1.46547 1.22133 0.85202 0.98104 0.94318 1.21447 0.95892 1.01857 0.98496 1.20337 0.87285 0.82299 0.81200 1.90691 1.58144 1.31115 1.61216 1.42979 1.24047 1.31263 1.31045 1.17274 0.86339 1.14102 0.91279 1.20322 0.98430 1.03749 0.91553 1.21184 0.93366 1.00916 1.00698 1.17732 0.93498 0.88249 0.90810 1.19499 0.94069 1.36081 0.99450 0.90608 1.25886 0.97588 0.94463 0.96681 1.69764 1.26139 1.35354 1.12628 0.86192 0.81708 0.78785 0.79254 1.19522 1.20310 1.18732 1.20806 0.97272 1.09029 0.95507 1.20399 0.92110 0.99620 0.98394 0.92969 0.92780 0.92742 0.90254 0.92615 0.92686 0.92901 0.91148 0.90892 0.92286 0.91806 0.91872 0.92567 0.92458 0.88383 0.88487 0.76970 0.89054 0.85055 0.91140 0.88604 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.19 37.16 0.34 -0.69 16 2 C -0.10 -0.82 2.86 -90.62 -0.26 -1.08 16 3 C -0.15 -1.23 8.97 37.16 0.33 -0.90 16 4 C -0.11 -0.87 4.39 -26.73 -0.12 -0.99 16 5 C 0.08 0.79 2.59 -26.73 -0.07 0.73 16 6 H 0.06 0.61 6.10 -51.93 -0.32 0.29 16 7 C -0.18 -1.48 9.53 37.16 0.35 -1.13 16 8 O -0.38 -4.37 9.35 -35.23 -0.33 -4.70 16 9 C 0.08 0.99 5.04 37.15 0.19 1.18 16 10 C -0.14 -1.65 6.07 -27.89 -0.17 -1.82 16 11 C 0.50 8.52 7.66 -10.98 -0.08 8.43 16 12 O -0.53 -11.26 13.41 5.56 0.07 -11.18 16 13 N -0.65 -11.25 5.30 -9.74 -0.05 -11.30 16 14 C 0.00 0.05 6.30 -83.57 -0.53 -0.48 16 15 C -0.12 -2.74 9.90 -39.79 -0.39 -3.14 16 16 C -0.14 -3.65 8.61 -39.26 -0.34 -3.99 16 17 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 18 C -0.46 -12.32 9.03 -37.85 -0.34 -12.66 16 19 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 20 C 0.07 1.75 5.41 -17.34 -0.09 1.65 16 21 N -0.81 -21.17 10.60 55.55 0.59 -20.58 16 22 Si 0.92 19.06 29.56 -169.99 -5.02 14.03 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 26 C -0.21 -5.25 9.74 -39.26 -0.38 -5.64 16 27 C -0.09 -2.05 8.61 -39.79 -0.34 -2.39 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.08 0.78 7.61 -51.93 -0.40 0.39 16 32 H 0.05 0.50 6.54 -51.93 -0.34 0.16 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.73 7.83 -51.93 -0.41 0.33 16 41 H 0.06 0.77 8.04 -51.93 -0.42 0.35 16 42 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.40 5.30 8.82 -40.82 -0.36 4.94 16 45 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 46 H 0.13 3.49 6.14 -52.49 -0.32 3.16 16 47 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 48 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 49 H 0.11 2.53 6.23 -52.49 -0.33 2.20 16 LS Contribution 396.00 15.07 5.97 5.97 Total: -1.00 -30.04 396.00 -9.61 -39.65 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -8.34 Total: 8.94 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -2.50 Total: -20.82 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.54 Total: -31.89 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.25 Total: -15.88 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.04 -9.61 -39.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087004636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.182 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds