Wall clock time and date at job start Tue Mar 31 2020 12:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47183 * 2 1 4 4 C 1.53002 * 109.47226 * 120.00351 * 2 1 3 5 5 C 1.52996 * 109.47508 * 65.59450 * 4 2 1 6 6 H 1.08999 * 109.47021 * 303.37829 * 5 4 2 7 7 C 1.52998 * 109.47172 * 183.37408 * 5 4 2 8 8 O 1.42906 * 109.46661 * 63.37930 * 5 4 2 9 9 C 1.42904 * 113.99363 * 210.00163 * 8 5 4 10 10 C 1.53005 * 109.46606 * 179.97438 * 9 8 5 11 11 C 1.50705 * 109.46970 * 184.91802 * 10 9 8 12 12 O 1.21285 * 119.99709 * 5.00776 * 11 10 9 13 13 N 1.34767 * 119.99953 * 185.00606 * 11 10 9 14 14 C 1.37146 * 120.00396 * 4.00492 * 13 11 10 15 15 H 1.07995 * 119.99698 * 307.39613 * 14 13 11 16 16 C 1.38884 * 119.99864 * 127.38684 * 14 13 11 17 17 N 1.31429 * 119.99796 * 173.58471 * 16 14 13 18 18 Si 1.86793 * 120.00356 * 353.59051 * 16 14 13 19 19 H 1.48506 * 109.47133 * 95.24740 * 18 16 14 20 20 H 1.48501 * 109.47054 * 215.24524 * 18 16 14 21 21 H 1.48503 * 109.47330 * 335.24630 * 18 16 14 22 22 C 1.39794 * 120.00284 * 184.00837 * 13 11 10 23 23 C 1.38956 * 120.08195 * 172.71303 * 22 13 11 24 24 C 1.38084 * 119.92299 * 179.97438 * 23 22 13 25 25 C 1.38311 * 120.07779 * 359.97438 * 24 23 22 26 26 C 1.38306 * 120.15492 * 0.04228 * 25 24 23 27 27 C 1.38090 * 120.07848 * 359.95577 * 26 25 24 28 28 H 1.09000 * 109.47463 * 300.00075 * 1 2 3 29 29 H 1.08996 * 109.47582 * 60.00316 * 1 2 3 30 30 H 1.09002 * 109.47066 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47002 * 239.99709 * 2 1 3 32 32 H 1.08993 * 109.47299 * 64.97243 * 3 2 1 33 33 H 1.09000 * 109.47091 * 184.97639 * 3 2 1 34 34 H 1.09006 * 109.47210 * 304.96780 * 3 2 1 35 35 H 1.09001 * 109.46856 * 305.59670 * 4 2 1 36 36 H 1.09001 * 109.47206 * 185.60091 * 4 2 1 37 37 H 1.08997 * 109.47180 * 60.00165 * 7 5 4 38 38 H 1.08997 * 109.47403 * 180.02562 * 7 5 4 39 39 H 1.08999 * 109.47492 * 300.00133 * 7 5 4 40 40 H 1.08991 * 109.47561 * 59.99757 * 9 8 5 41 41 H 1.09000 * 109.46979 * 299.99288 * 9 8 5 42 42 H 1.09001 * 109.47150 * 64.92190 * 10 9 8 43 43 H 1.08997 * 109.47131 * 304.91558 * 10 9 8 44 44 H 0.96994 * 120.00244 * 180.02562 * 17 16 14 45 45 H 1.08000 * 120.03686 * 359.70414 * 23 22 13 46 46 H 1.08001 * 119.96062 * 180.02562 * 24 23 22 47 47 H 1.07994 * 119.92325 * 179.97438 * 25 24 23 48 48 H 1.08001 * 119.96218 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.03527 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6481 -2.1987 1.1809 6 1 0.5671 -2.2830 1.0690 7 6 2.0841 -2.9020 2.4677 8 8 2.2921 -2.8110 0.0617 9 6 1.5564 -3.8938 -0.5112 10 6 2.3358 -4.4698 -1.6953 11 6 1.5075 -5.5304 -2.3737 12 8 0.3691 -5.7360 -2.0093 13 7 2.0318 -6.2503 -3.3852 14 6 3.3441 -6.0754 -3.7432 15 1 3.7177 -5.0853 -3.9585 16 6 4.1925 -7.1717 -3.8285 17 7 5.4134 -7.0232 -4.2920 18 14 3.5985 -8.8571 -3.2848 19 1 3.0957 -9.6086 -4.4629 20 1 4.7238 -9.6025 -2.6656 21 1 2.5038 -8.7002 -2.2937 22 6 1.2380 -7.1752 -4.0697 23 6 1.7279 -7.8074 -5.2060 24 6 0.9411 -8.7209 -5.8793 25 6 -0.3330 -9.0072 -5.4236 26 6 -0.8240 -8.3796 -4.2932 27 6 -0.0427 -7.4651 -3.6149 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.7512 1.9299 0.9311 33 1 3.1263 1.4437 -0.0891 34 1 1.6057 1.9814 -0.8422 35 1 1.5971 -0.2687 2.1364 36 1 3.1253 -0.6353 1.3008 37 1 1.5930 -2.4350 3.3214 38 1 1.8054 -3.9546 2.4189 39 1 3.1651 -2.8177 2.5796 40 1 0.5874 -3.5328 -0.8557 41 1 1.4090 -4.6703 0.2394 42 1 3.2670 -4.9094 -1.3380 43 1 2.5587 -3.6735 -2.4054 44 1 6.0058 -7.7888 -4.3520 45 1 2.7212 -7.5813 -5.5646 46 1 1.3215 -9.2129 -6.7623 47 1 -0.9463 -9.7218 -5.9524 48 1 -1.8195 -8.6052 -3.9404 49 1 -0.4270 -6.9750 -2.7325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087209322.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:09 Heat of formation + Delta-G solvation = -58.018732 kcal Electronic energy + Delta-G solvation = -27419.480887 eV Core-core repulsion = 23732.733808 eV Total energy + Delta-G solvation = -3686.747080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.13859 -38.70147 -37.59716 -35.85843 -35.17377 -32.35101 -32.20924 -30.58094 -30.09752 -28.69345 -27.27089 -26.71757 -25.33996 -23.66663 -21.80003 -21.51676 -21.13849 -19.98337 -19.28569 -18.01506 -16.98649 -16.15682 -15.87886 -15.60157 -15.45758 -15.22291 -14.61515 -14.37904 -14.05949 -13.84648 -13.67780 -13.37258 -13.11355 -12.94049 -12.79075 -12.67283 -12.47355 -12.39075 -12.32340 -12.13111 -12.02328 -11.82200 -11.46044 -11.38219 -11.06232 -11.00110 -10.91100 -10.70342 -10.63006 -10.55574 -10.30202 -10.24754 -10.13107 -9.50676 -9.26798 -8.97611 -8.43636 -8.05643 -7.10904 -6.58721 -4.50927 2.01922 2.15867 3.12576 3.22324 3.31430 3.49520 3.61651 4.06345 4.36193 4.56740 4.64376 4.84644 4.86542 4.90663 5.17726 5.22402 5.29581 5.44432 5.51995 5.54648 5.56068 5.58791 5.61299 5.66464 5.70481 5.74399 5.76923 5.84656 5.88509 5.91142 5.97483 6.02551 6.15643 6.20584 6.26925 6.29168 6.35301 6.38573 6.41243 6.47825 6.59690 6.80765 7.15335 7.23735 7.28430 7.34876 7.49159 7.71388 7.95726 8.16437 8.73135 9.04127 9.32187 10.44560 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015853 B = 0.003354 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.798593 B = 8347.311914 C = 9015.044896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.109 4.109 5 C 0.084 3.916 6 H 0.061 0.939 7 C -0.176 4.176 8 O -0.380 6.380 9 C 0.078 3.922 10 C -0.117 4.117 11 C 0.502 3.498 12 O -0.564 6.564 13 N -0.405 5.405 14 C -0.369 4.369 15 H 0.111 0.889 16 C 0.084 3.916 17 N -0.856 5.856 18 Si 0.868 3.132 19 H -0.252 1.252 20 H -0.288 1.288 21 H -0.261 1.261 22 C 0.155 3.845 23 C -0.154 4.154 24 C -0.107 4.107 25 C -0.171 4.171 26 C -0.111 4.111 27 C -0.186 4.186 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.280 0.720 45 H 0.140 0.860 46 H 0.113 0.887 47 H 0.108 0.892 48 H 0.112 0.888 49 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.686 8.118 7.623 12.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.203 4.203 4 C -0.147 4.147 5 C 0.026 3.974 6 H 0.079 0.921 7 C -0.233 4.233 8 O -0.299 6.299 9 C 0.001 3.999 10 C -0.156 4.156 11 C 0.294 3.706 12 O -0.449 6.449 13 N -0.114 5.114 14 C -0.495 4.495 15 H 0.129 0.871 16 C -0.126 4.126 17 N -0.488 5.488 18 Si 0.694 3.306 19 H -0.177 1.177 20 H -0.214 1.214 21 H -0.185 1.185 22 C 0.059 3.941 23 C -0.174 4.174 24 C -0.126 4.126 25 C -0.190 4.190 26 C -0.130 4.130 27 C -0.205 4.205 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.123 0.877 43 H 0.115 0.885 44 H 0.090 0.910 45 H 0.157 0.843 46 H 0.131 0.869 47 H 0.126 0.874 48 H 0.130 0.870 49 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -6.782 8.074 7.716 13.066 hybrid contribution -0.128 -1.164 0.092 1.175 sum -6.910 6.910 7.807 12.508 Atomic orbital electron populations 1.21904 0.95639 1.01742 1.01369 1.21100 0.95503 0.95877 0.99304 1.21828 1.01029 0.96121 1.01317 1.21744 1.01940 0.93095 0.97915 1.22103 0.96527 0.92537 0.86219 0.92100 1.22299 1.02507 1.01107 0.97425 1.87878 1.47121 1.48667 1.46256 1.22242 0.94325 0.88618 0.94668 1.21186 1.00017 0.97607 0.96802 1.20696 0.86726 0.83794 0.79338 1.90196 1.19974 1.69795 1.64905 1.41412 1.10600 1.33037 1.26356 1.19043 0.81611 0.97361 1.51468 0.87141 1.25444 0.94562 0.99129 0.93423 1.69659 1.06317 1.32541 1.40330 0.87012 0.78844 0.83730 0.81009 1.17672 1.21441 1.18459 1.18504 0.90932 0.92446 0.92234 1.21102 1.01910 0.98744 0.95679 1.20823 0.94244 0.98040 0.99461 1.20919 0.96474 1.02764 0.98850 1.21016 0.99176 0.97051 0.95735 1.22823 0.93644 1.00120 1.03954 0.93062 0.92806 0.92600 0.90034 0.93097 0.92694 0.92847 0.91117 0.91098 0.92069 0.92356 0.91818 0.92765 0.93257 0.87656 0.88478 0.91004 0.84263 0.86889 0.87396 0.87005 0.80379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.96 37.15 0.33 -1.14 16 2 C -0.10 -1.05 2.86 -90.62 -0.26 -1.31 16 3 C -0.15 -1.32 9.19 37.16 0.34 -0.98 16 4 C -0.11 -1.14 4.39 -26.73 -0.12 -1.25 16 5 C 0.08 1.01 2.58 -26.73 -0.07 0.94 16 6 H 0.06 0.72 6.08 -51.93 -0.32 0.40 16 7 C -0.18 -1.92 9.53 37.16 0.35 -1.57 16 8 O -0.38 -5.78 9.36 -35.23 -0.33 -6.11 16 9 C 0.08 1.29 5.14 37.16 0.19 1.48 16 10 C -0.12 -2.20 4.90 -27.88 -0.14 -2.33 16 11 C 0.50 11.13 7.57 -10.99 -0.08 11.04 16 12 O -0.56 -12.80 12.29 5.55 0.07 -12.73 16 13 N -0.41 -9.73 2.25 -58.98 -0.13 -9.86 16 14 C -0.37 -9.30 7.94 -14.94 -0.12 -9.42 16 15 H 0.11 2.89 7.93 -52.49 -0.42 2.48 16 16 C 0.08 2.18 4.30 -17.48 -0.08 2.10 16 17 N -0.86 -22.80 13.96 55.49 0.77 -22.03 16 18 Si 0.87 20.85 24.15 -169.99 -4.10 16.74 16 19 H -0.25 -5.86 6.08 56.52 0.34 -5.52 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.26 -6.60 6.91 56.52 0.39 -6.21 16 22 C 0.16 3.66 4.45 -83.69 -0.37 3.29 16 23 C -0.15 -3.48 5.77 -39.37 -0.23 -3.71 16 24 C -0.11 -2.10 9.80 -39.61 -0.39 -2.49 16 25 C -0.17 -3.10 10.04 -39.53 -0.40 -3.50 16 26 C -0.11 -2.11 10.04 -39.61 -0.40 -2.51 16 27 C -0.19 -4.10 9.04 -39.37 -0.36 -4.45 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.59 6.51 -51.93 -0.34 0.25 16 31 H 0.08 1.03 7.63 -51.93 -0.40 0.64 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.67 7.87 -51.93 -0.41 0.27 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.89 7.83 -51.93 -0.41 0.48 16 41 H 0.05 0.81 7.87 -51.93 -0.41 0.40 16 42 H 0.11 2.05 7.89 -51.93 -0.41 1.64 16 43 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 44 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.14 3.33 5.65 -52.49 -0.30 3.03 16 46 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 47 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 48 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 49 H 0.18 4.04 4.55 -56.16 -0.26 3.79 16 LS Contribution 382.33 15.07 5.76 5.76 Total: -1.00 -27.55 382.33 -8.09 -35.64 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -8.35 Total: 8.40 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -1.78 Total: -15.81 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.64 Total: -31.89 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.26 Total: -18.85 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.10 Total: 16.74 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -27.55 -8.09 -35.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087209322.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.375 kcal (2) G-P(sol) polarization free energy of solvation -27.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds