Wall clock time and date at job start Tue Mar 31 2020 12:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47183 * 2 1 4 4 C 1.53002 * 109.47226 * 120.00351 * 2 1 3 5 5 C 1.52996 * 109.47508 * 65.59450 * 4 2 1 6 6 H 1.08999 * 109.47021 * 303.37829 * 5 4 2 7 7 C 1.52998 * 109.47172 * 183.37408 * 5 4 2 8 8 O 1.42906 * 109.46661 * 63.37930 * 5 4 2 9 9 C 1.42904 * 113.99363 * 210.00163 * 8 5 4 10 10 C 1.53005 * 109.46606 * 179.97438 * 9 8 5 11 11 C 1.50705 * 109.46970 * 184.91802 * 10 9 8 12 12 O 1.21285 * 119.99709 * 5.00776 * 11 10 9 13 13 N 1.34767 * 119.99953 * 185.00606 * 11 10 9 14 14 C 1.37146 * 120.00396 * 4.00492 * 13 11 10 15 15 H 1.07995 * 119.99698 * 307.39613 * 14 13 11 16 16 C 1.38884 * 119.99864 * 127.38684 * 14 13 11 17 17 N 1.31429 * 119.99796 * 173.58471 * 16 14 13 18 18 Si 1.86793 * 120.00356 * 353.59051 * 16 14 13 19 19 H 1.48506 * 109.47133 * 95.24740 * 18 16 14 20 20 H 1.48501 * 109.47054 * 215.24524 * 18 16 14 21 21 H 1.48503 * 109.47330 * 335.24630 * 18 16 14 22 22 C 1.39794 * 120.00284 * 184.00837 * 13 11 10 23 23 C 1.38956 * 120.08195 * 172.71303 * 22 13 11 24 24 C 1.38084 * 119.92299 * 179.97438 * 23 22 13 25 25 C 1.38311 * 120.07779 * 359.97438 * 24 23 22 26 26 C 1.38306 * 120.15492 * 0.04228 * 25 24 23 27 27 C 1.38090 * 120.07848 * 359.95577 * 26 25 24 28 28 H 1.09000 * 109.47463 * 300.00075 * 1 2 3 29 29 H 1.08996 * 109.47582 * 60.00316 * 1 2 3 30 30 H 1.09002 * 109.47066 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47002 * 239.99709 * 2 1 3 32 32 H 1.08993 * 109.47299 * 64.97243 * 3 2 1 33 33 H 1.09000 * 109.47091 * 184.97639 * 3 2 1 34 34 H 1.09006 * 109.47210 * 304.96780 * 3 2 1 35 35 H 1.09001 * 109.46856 * 305.59670 * 4 2 1 36 36 H 1.09001 * 109.47206 * 185.60091 * 4 2 1 37 37 H 1.08997 * 109.47180 * 60.00165 * 7 5 4 38 38 H 1.08997 * 109.47403 * 180.02562 * 7 5 4 39 39 H 1.08999 * 109.47492 * 300.00133 * 7 5 4 40 40 H 1.08991 * 109.47561 * 59.99757 * 9 8 5 41 41 H 1.09000 * 109.46979 * 299.99288 * 9 8 5 42 42 H 1.09001 * 109.47150 * 64.92190 * 10 9 8 43 43 H 1.08997 * 109.47131 * 304.91558 * 10 9 8 44 44 H 0.96994 * 120.00244 * 180.02562 * 17 16 14 45 45 H 1.08000 * 120.03686 * 359.70414 * 23 22 13 46 46 H 1.08001 * 119.96062 * 180.02562 * 24 23 22 47 47 H 1.07994 * 119.92325 * 179.97438 * 25 24 23 48 48 H 1.08001 * 119.96218 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.03527 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6481 -2.1987 1.1809 6 1 0.5671 -2.2830 1.0690 7 6 2.0841 -2.9020 2.4677 8 8 2.2921 -2.8110 0.0617 9 6 1.5564 -3.8938 -0.5112 10 6 2.3358 -4.4698 -1.6953 11 6 1.5075 -5.5304 -2.3737 12 8 0.3691 -5.7360 -2.0093 13 7 2.0318 -6.2503 -3.3852 14 6 3.3441 -6.0754 -3.7432 15 1 3.7177 -5.0853 -3.9585 16 6 4.1925 -7.1717 -3.8285 17 7 5.4134 -7.0232 -4.2920 18 14 3.5985 -8.8571 -3.2848 19 1 3.0957 -9.6086 -4.4629 20 1 4.7238 -9.6025 -2.6656 21 1 2.5038 -8.7002 -2.2937 22 6 1.2380 -7.1752 -4.0697 23 6 1.7279 -7.8074 -5.2060 24 6 0.9411 -8.7209 -5.8793 25 6 -0.3330 -9.0072 -5.4236 26 6 -0.8240 -8.3796 -4.2932 27 6 -0.0427 -7.4651 -3.6149 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.7512 1.9299 0.9311 33 1 3.1263 1.4437 -0.0891 34 1 1.6057 1.9814 -0.8422 35 1 1.5971 -0.2687 2.1364 36 1 3.1253 -0.6353 1.3008 37 1 1.5930 -2.4350 3.3214 38 1 1.8054 -3.9546 2.4189 39 1 3.1651 -2.8177 2.5796 40 1 0.5874 -3.5328 -0.8557 41 1 1.4090 -4.6703 0.2394 42 1 3.2670 -4.9094 -1.3380 43 1 2.5587 -3.6735 -2.4054 44 1 6.0058 -7.7888 -4.3520 45 1 2.7212 -7.5813 -5.5646 46 1 1.3215 -9.2129 -6.7623 47 1 -0.9463 -9.7218 -5.9524 48 1 -1.8195 -8.6052 -3.9404 49 1 -0.4270 -6.9750 -2.7325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087209322.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:08 Heat of formation + Delta-G solvation = -71.256471 kcal Electronic energy + Delta-G solvation = -27420.054919 eV Core-core repulsion = 23732.733808 eV Total energy + Delta-G solvation = -3687.321111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.86539 -39.84276 -39.15678 -37.01146 -36.79118 -34.20731 -33.50661 -31.89146 -31.68671 -30.25328 -28.02649 -27.57650 -27.23153 -25.15843 -23.39029 -22.73208 -22.48571 -21.15593 -20.79402 -19.76535 -18.42614 -17.75871 -17.45908 -17.05130 -16.97522 -16.38704 -15.96865 -15.80250 -15.40327 -15.30508 -15.01648 -14.94819 -14.65077 -14.22722 -14.18399 -14.13646 -13.89845 -13.69339 -13.44282 -13.19602 -13.09229 -13.03778 -12.73102 -12.68362 -12.53771 -12.47066 -12.25894 -12.12907 -12.02757 -11.88587 -11.53521 -11.44942 -11.33970 -11.17527 -10.85741 -10.43469 -10.15904 -9.67446 -8.88190 -8.55740 -6.51033 0.40269 0.53970 1.21546 1.27397 1.36411 1.75176 2.10665 2.19326 2.71558 2.95029 3.09824 3.76450 3.84920 3.97166 4.05912 4.09617 4.13421 4.18567 4.24751 4.31385 4.37342 4.45535 4.47046 4.51713 4.66972 4.72398 4.77202 4.79082 4.81878 4.86274 4.87712 4.91525 4.95060 5.01913 5.06698 5.09317 5.14667 5.23030 5.31328 5.39883 5.47745 5.48583 5.56508 5.57807 5.65580 5.72098 5.96698 6.01287 6.33469 6.37990 6.79787 7.17241 7.48077 8.48037 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015853 B = 0.003354 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.798593 B = 8347.311914 C = 9015.044896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.142 4.142 4 C -0.105 4.105 5 C 0.075 3.925 6 H 0.065 0.935 7 C -0.173 4.173 8 O -0.393 6.393 9 C 0.093 3.907 10 C -0.110 4.110 11 C 0.495 3.505 12 O -0.571 6.571 13 N -0.420 5.420 14 C -0.361 4.361 15 H 0.090 0.910 16 C 0.060 3.940 17 N -0.887 5.887 18 Si 0.913 3.087 19 H -0.238 1.238 20 H -0.285 1.285 21 H -0.282 1.282 22 C 0.125 3.875 23 C -0.176 4.176 24 C -0.108 4.108 25 C -0.157 4.157 26 C -0.106 4.106 27 C -0.205 4.205 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.284 0.716 45 H 0.118 0.882 46 H 0.142 0.858 47 H 0.154 0.846 48 H 0.148 0.852 49 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.645 7.492 8.028 13.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.200 4.200 4 C -0.142 4.142 5 C 0.018 3.982 6 H 0.083 0.917 7 C -0.231 4.231 8 O -0.313 6.313 9 C 0.016 3.984 10 C -0.149 4.149 11 C 0.288 3.712 12 O -0.456 6.456 13 N -0.130 5.130 14 C -0.488 4.488 15 H 0.108 0.892 16 C -0.148 4.148 17 N -0.522 5.522 18 Si 0.739 3.261 19 H -0.162 1.162 20 H -0.212 1.212 21 H -0.207 1.207 22 C 0.029 3.971 23 C -0.197 4.197 24 C -0.126 4.126 25 C -0.175 4.175 26 C -0.124 4.124 27 C -0.225 4.225 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.094 0.906 45 H 0.136 0.864 46 H 0.160 0.840 47 H 0.171 0.829 48 H 0.166 0.834 49 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.748 7.448 8.112 14.065 hybrid contribution 0.357 -0.937 -0.068 1.005 sum -8.392 6.511 8.044 13.324 Atomic orbital electron populations 1.21886 0.94992 1.01290 1.02275 1.21085 0.96075 0.96614 0.98232 1.21796 1.00798 0.95105 1.02259 1.21752 1.01789 0.91855 0.98798 1.22399 0.96731 0.93537 0.85566 0.91680 1.22286 1.02514 1.00594 0.97671 1.87862 1.47606 1.48276 1.47593 1.21972 0.93737 0.89011 0.93650 1.21129 0.99423 0.96750 0.97601 1.21148 0.86968 0.83918 0.79136 1.90185 1.20221 1.70085 1.65089 1.41501 1.10263 1.33960 1.27248 1.18850 0.82523 0.96551 1.50852 0.89191 1.25795 0.94489 1.01028 0.93439 1.69703 1.07144 1.33442 1.41925 0.86333 0.77632 0.81710 0.80427 1.16224 1.21213 1.20725 1.18792 0.91872 0.93173 0.93254 1.21092 1.01754 1.00516 0.96331 1.21240 0.94638 0.96885 0.99860 1.21411 0.95959 1.02178 0.97999 1.21445 1.00206 0.95375 0.95369 1.22858 0.93602 1.01575 1.04462 0.91282 0.92792 0.93699 0.92899 0.91517 0.93011 0.92648 0.88589 0.91620 0.89497 0.93382 0.92191 0.92810 0.93354 0.88617 0.88413 0.90553 0.86412 0.84013 0.82866 0.83431 0.81457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.96 71.98 0.65 -2.10 16 2 C -0.10 -2.08 2.86 -10.80 -0.03 -2.12 16 3 C -0.14 -2.41 9.19 71.98 0.66 -1.75 16 4 C -0.10 -2.04 4.39 30.59 0.13 -1.90 16 5 C 0.07 1.76 2.58 30.59 0.08 1.84 16 6 H 0.07 1.48 6.08 -2.39 -0.01 1.47 16 7 C -0.17 -3.59 9.53 71.98 0.69 -2.91 16 8 O -0.39 -12.20 9.36 -148.98 -1.39 -13.60 16 9 C 0.09 3.15 5.14 71.98 0.37 3.52 16 10 C -0.11 -4.32 4.90 29.85 0.15 -4.17 16 11 C 0.49 22.70 7.57 87.66 0.66 23.37 16 12 O -0.57 -26.46 12.29 -3.05 -0.04 -26.50 16 13 N -0.42 -20.79 2.25 -458.90 -1.03 -21.82 16 14 C -0.36 -18.98 7.94 84.02 0.67 -18.31 16 15 H 0.09 4.99 7.93 -2.91 -0.02 4.97 16 16 C 0.06 3.15 4.30 84.91 0.37 3.52 16 17 N -0.89 -48.49 13.96 21.65 0.30 -48.19 16 18 Si 0.91 43.63 24.15 68.60 1.66 45.29 16 19 H -0.24 -10.71 6.08 99.48 0.61 -10.11 16 20 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.28 -14.38 6.91 99.48 0.69 -13.69 16 22 C 0.12 5.91 4.45 38.22 0.17 6.08 16 23 C -0.18 -7.90 5.77 22.41 0.13 -7.77 16 24 C -0.11 -3.93 9.80 22.25 0.22 -3.71 16 25 C -0.16 -5.01 10.04 22.30 0.22 -4.79 16 26 C -0.11 -3.67 10.04 22.25 0.22 -3.45 16 27 C -0.21 -8.90 9.04 22.41 0.20 -8.69 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 0.92 6.51 -2.39 -0.02 0.91 16 31 H 0.05 1.38 7.63 -2.39 -0.02 1.36 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.05 1.09 7.87 -2.39 -0.02 1.07 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.05 1.80 7.83 -2.39 -0.02 1.78 16 41 H 0.05 1.62 7.87 -2.39 -0.02 1.60 16 42 H 0.10 3.94 7.89 -2.39 -0.02 3.92 16 43 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 44 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 45 H 0.12 5.73 5.65 -2.91 -0.02 5.71 16 46 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 47 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 48 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 49 H 0.17 7.61 4.55 -61.05 -0.28 7.33 16 Total: -1.00 -60.75 382.33 5.57 -55.18 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: 0.52 Total: 32.98 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: 5.56 Total: -23.34 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -0.73 Total: -70.01 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -1.43 Total: -40.09 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.66 Total: 45.29 kcal Total: -60.75 5.57 -55.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087209322.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.078 kcal (2) G-P(sol) polarization free energy of solvation -60.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds