Wall clock time and date at job start Tue Mar 31 2020 12:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.54571 * 2 1 4 4 C 1.53109 * 109.50494 * 239.89231 * 2 1 3 5 5 O 1.43009 * 109.25770 * 183.21775 * 4 2 1 6 6 C 1.43017 * 113.73812 * 58.67275 * 5 4 2 7 7 H 1.08993 * 109.50590 * 61.26671 * 6 5 4 8 8 C 1.53002 * 109.53992 * 181.37072 * 6 5 4 9 9 C 1.53097 * 109.25851 * 301.32318 * 6 5 4 10 10 N 1.47011 * 109.50730 * 120.11596 * 2 1 3 11 11 C 1.46906 * 110.99675 * 302.32010 * 10 2 1 12 12 C 1.50700 * 109.47030 * 302.41167 * 11 10 2 13 13 C 1.38290 * 119.96995 * 90.00495 * 12 11 10 14 14 C 1.38244 * 120.11180 * 179.97438 * 13 12 11 15 15 C 1.38167 * 120.05373 * 0.02562 * 14 13 12 16 16 C 1.38711 * 119.94263 * 0.23663 * 15 14 13 17 17 O 1.35904 * 120.05009 * 179.71812 * 16 15 14 18 18 C 1.42900 * 117.00133 * 0.02562 * 17 16 15 19 19 C 1.53007 * 109.46861 * 179.97438 * 18 17 16 20 20 C 1.50696 * 109.46956 * 180.02562 * 19 18 17 21 21 H 1.08006 * 119.99977 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00047 * 179.97438 * 20 19 18 23 23 N 1.31521 * 119.99986 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00244 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47219 * 90.00158 * 24 22 20 26 26 H 1.48503 * 109.47180 * 210.00308 * 24 22 20 27 27 H 1.48507 * 109.46871 * 330.00120 * 24 22 20 28 28 C 1.38115 * 119.97180 * 269.97607 * 12 11 10 29 29 H 1.08999 * 109.46767 * 299.88864 * 1 2 3 30 30 H 1.09001 * 109.46855 * 59.88306 * 1 2 3 31 31 H 1.08995 * 109.47219 * 179.88983 * 1 2 3 32 32 H 1.09000 * 109.50178 * 63.28469 * 4 2 1 33 33 H 1.08992 * 109.50608 * 303.15435 * 4 2 1 34 34 H 1.09001 * 109.47025 * 179.80397 * 8 6 5 35 35 H 1.08997 * 109.47327 * 299.80208 * 8 6 5 36 36 H 1.09005 * 109.47283 * 59.80621 * 8 6 5 37 37 H 1.08995 * 109.51167 * 296.92174 * 9 6 5 38 38 H 1.08993 * 109.54199 * 176.80550 * 9 6 5 39 39 H 1.09000 * 109.46614 * 182.41407 * 11 10 2 40 40 H 1.09001 * 109.46755 * 62.41811 * 11 10 2 41 41 H 1.08007 * 119.94201 * 0.02562 * 13 12 11 42 42 H 1.07999 * 119.97240 * 180.02562 * 14 13 12 43 43 H 1.08002 * 120.02367 * 179.97438 * 15 14 13 44 44 H 1.08990 * 109.47307 * 299.99695 * 18 17 16 45 45 H 1.09002 * 109.47120 * 60.00371 * 18 17 16 46 46 H 1.09001 * 109.46754 * 300.00272 * 19 18 17 47 47 H 1.08994 * 109.46834 * 60.00150 * 19 18 17 48 48 H 0.96995 * 120.00071 * 179.97438 * 23 22 20 49 49 H 1.08001 * 120.03381 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0412 -0.7240 -1.2485 5 8 3.4693 -0.7868 -1.2058 6 6 3.9818 -1.4580 -0.0516 7 1 3.6301 -2.4896 -0.0444 8 6 5.5113 -1.4399 -0.0860 9 6 3.4904 -0.7415 1.2090 10 7 2.0209 -0.6953 1.1987 11 6 1.5055 -0.0645 2.4212 12 6 1.9098 1.3870 2.4464 13 6 1.0857 2.3435 1.8822 14 6 1.4534 3.6760 1.9041 15 6 2.6461 4.0551 2.4895 16 6 3.4770 3.0969 3.0512 17 8 4.6534 3.4668 3.6226 18 6 4.9711 4.8599 3.6098 19 6 6.3222 5.0811 4.2930 20 6 6.6570 6.5503 4.2802 21 1 5.9746 7.2558 3.8294 22 6 7.8344 6.9941 4.8439 23 7 8.6656 6.1350 5.3924 24 14 8.2498 8.8152 4.8273 25 1 7.7109 9.4571 6.0532 26 1 9.7244 8.9863 4.7863 27 1 7.6443 9.4501 3.6291 28 6 3.1028 1.7609 3.0333 29 1 -0.3633 0.5121 0.8910 30 1 -0.3633 0.5157 -0.8890 31 1 -0.3633 -1.0276 -0.0020 32 1 1.7273 -0.1794 -2.1390 33 1 1.6331 -1.7342 -1.2761 34 1 5.9006 -1.9486 0.7958 35 1 5.8606 -1.9501 -0.9836 36 1 5.8624 -0.4079 -0.0947 37 1 3.8863 0.2738 1.2284 38 1 3.8313 -1.2820 2.0919 39 1 1.9181 -0.5718 3.2933 40 1 0.4182 -0.1393 2.4379 41 1 0.1527 2.0492 1.4245 42 1 0.8079 4.4212 1.4632 43 1 2.9331 5.0962 2.5060 44 1 5.0228 5.2114 2.5794 45 1 4.1992 5.4136 4.1443 46 1 6.2700 4.7297 5.3235 47 1 7.0943 4.5274 3.7590 48 1 9.4941 6.4471 5.7886 49 1 3.7457 1.0137 3.4746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092017572.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:40 Heat of formation + Delta-G solvation = -64.321517 kcal Electronic energy + Delta-G solvation = -27317.280586 eV Core-core repulsion = 23630.260197 eV Total energy + Delta-G solvation = -3687.020389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.65649 -39.47508 -37.63645 -35.85818 -33.67212 -33.40529 -31.71657 -30.81912 -30.11155 -29.27858 -27.28457 -25.85957 -25.11871 -24.14689 -22.67837 -21.92395 -21.61262 -20.53298 -19.75715 -17.59996 -16.87420 -16.32978 -16.32450 -15.89178 -15.73763 -15.41420 -15.37272 -15.04997 -14.97210 -14.52095 -14.24742 -13.68777 -13.34333 -13.07277 -12.96961 -12.65997 -12.60559 -12.40329 -12.33031 -12.20026 -12.13583 -11.84211 -11.50393 -11.41975 -11.33955 -11.21375 -11.03409 -10.89359 -10.79569 -10.63520 -10.50525 -9.89809 -9.72235 -9.68591 -9.33445 -8.81022 -8.56454 -8.47529 -7.90130 -6.12945 -4.17838 1.36125 1.60141 3.25519 3.31500 3.34293 3.51337 3.62172 3.76515 3.92443 4.38230 4.49916 4.61116 4.71260 4.82224 4.92403 4.96279 4.99286 5.11785 5.14774 5.16501 5.23496 5.30503 5.36721 5.39304 5.42710 5.48067 5.55747 5.59636 5.61671 5.67705 5.75793 5.77232 5.85124 5.98447 5.98970 6.01597 6.05091 6.10330 6.45110 6.50574 6.56167 6.67551 6.74186 6.79775 6.90865 7.03239 7.46794 7.60333 7.77706 8.01287 8.20650 8.87602 9.46679 10.98634 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017279 B = 0.002710 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.079226 B =10328.657600 C =11191.844752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.037 3.963 3 H 0.062 0.938 4 C 0.071 3.929 5 O -0.382 6.382 6 C 0.091 3.909 7 H 0.064 0.936 8 C -0.147 4.147 9 C 0.015 3.985 10 N -0.521 5.521 11 C 0.092 3.908 12 C -0.089 4.089 13 C -0.165 4.165 14 C -0.080 4.080 15 C -0.210 4.210 16 C 0.147 3.853 17 O -0.315 6.315 18 C 0.065 3.935 19 C 0.026 3.974 20 C -0.527 4.527 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.273 1.273 28 C -0.151 4.151 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.130 0.870 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.027 0.973 47 H 0.028 0.972 48 H 0.264 0.736 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.802 -15.722 -10.962 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.072 4.072 3 H 0.080 0.920 4 C -0.006 4.006 5 O -0.301 6.301 6 C 0.033 3.967 7 H 0.082 0.918 8 C -0.204 4.204 9 C -0.113 4.113 10 N -0.244 5.244 11 C -0.035 4.035 12 C -0.091 4.091 13 C -0.184 4.184 14 C -0.098 4.098 15 C -0.229 4.229 16 C 0.100 3.900 17 O -0.229 6.229 18 C -0.009 4.009 19 C -0.011 4.011 20 C -0.566 4.566 21 H 0.076 0.924 22 C -0.142 4.142 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.171 4.171 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.148 0.852 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.073 0.927 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.512 -16.279 -10.939 25.639 hybrid contribution 0.341 2.123 0.282 2.168 sum -16.171 -14.157 -10.657 23.989 Atomic orbital electron populations 1.21924 0.93757 1.02608 1.02338 1.22383 0.96173 0.97704 0.90907 0.91969 1.22669 0.81028 0.99971 0.96950 1.88001 1.20370 1.78568 1.43190 1.22149 0.94689 0.95340 0.84485 0.91835 1.21766 0.92642 1.03432 1.02605 1.22939 0.87841 1.01379 0.99131 1.62707 1.08733 1.51204 1.01721 1.21268 1.01023 0.88290 0.92968 1.20253 0.94333 0.96749 0.97769 1.20958 1.00569 0.92803 1.04081 1.20897 0.95599 0.95922 0.97382 1.21408 0.96844 0.99951 1.04734 1.19199 0.86077 0.93320 0.91444 1.86176 1.33621 1.29962 1.73092 1.23340 1.00719 0.76331 1.00474 1.19118 0.88451 0.97190 0.96342 1.20964 1.05084 0.91722 1.38785 0.92385 1.24989 0.96052 0.98130 0.94985 1.69975 1.10889 1.34109 1.37756 0.86485 0.77634 0.84715 0.78544 1.20471 1.21000 1.19746 1.20305 0.97904 0.93739 1.05122 0.91557 0.91975 0.91743 0.88725 0.92567 0.90791 0.91661 0.91536 0.92524 0.89619 0.89683 0.89296 0.86133 0.86198 0.85246 0.93164 0.93142 0.95416 0.95405 0.92672 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.40 37.16 0.31 -0.79 16 2 C 0.04 0.36 1.97 -67.59 -0.13 0.23 16 3 H 0.06 0.75 6.22 -51.93 -0.32 0.43 16 4 C 0.07 0.68 6.29 37.21 0.23 0.92 16 5 O -0.38 -4.63 10.47 -35.23 -0.37 -5.00 16 6 C 0.09 0.96 3.42 -26.68 -0.09 0.87 16 7 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 8 C -0.15 -1.41 9.57 37.16 0.36 -1.05 16 9 C 0.02 0.17 4.41 -3.71 -0.02 0.15 16 10 N -0.52 -5.28 4.75 -227.76 -1.08 -6.36 16 11 C 0.09 0.91 5.17 -4.97 -0.03 0.88 16 12 C -0.09 -1.10 4.02 -104.65 -0.42 -1.52 16 13 C -0.17 -1.95 7.81 -39.56 -0.31 -2.26 16 14 C -0.08 -1.04 10.04 -39.61 -0.40 -1.43 16 15 C -0.21 -3.30 9.04 -39.43 -0.36 -3.66 16 16 C 0.15 2.56 6.69 -39.22 -0.26 2.29 16 17 O -0.32 -6.52 10.14 -19.44 -0.20 -6.72 16 18 C 0.07 1.41 4.68 37.16 0.17 1.58 16 19 C 0.03 0.69 5.34 -27.88 -0.15 0.54 16 20 C -0.53 -14.73 9.11 -34.44 -0.31 -15.05 16 21 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 24 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 28 C -0.15 -2.25 7.97 -39.44 -0.31 -2.57 16 29 H 0.07 0.48 4.17 -51.93 -0.22 0.27 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.75 6.33 -51.93 -0.33 0.43 16 38 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 39 H 0.08 0.80 8.05 -51.93 -0.42 0.39 16 40 H 0.09 0.76 6.35 -51.93 -0.33 0.43 16 41 H 0.12 1.14 5.45 -52.48 -0.29 0.86 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.13 2.02 6.30 -52.49 -0.33 1.69 16 44 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 45 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 46 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 49 H 0.13 1.78 8.03 -52.49 -0.42 1.36 16 LS Contribution 378.77 15.07 5.71 5.71 Total: -1.00 -30.73 378.77 -10.10 -40.83 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -8.06 Total: 0.26 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -1.81 Total: -19.24 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: -0.34 Total: -32.08 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.57 Total: -11.72 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.73 -10.10 -40.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092017572.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.496 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds