Wall clock time and date at job start Tue Mar 31 2020 12:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.54571 * 2 1 4 4 C 1.53109 * 109.50494 * 239.89231 * 2 1 3 5 5 O 1.43009 * 109.25770 * 183.21775 * 4 2 1 6 6 C 1.43017 * 113.73812 * 58.67275 * 5 4 2 7 7 H 1.08993 * 109.50590 * 61.26671 * 6 5 4 8 8 C 1.53002 * 109.53992 * 181.37072 * 6 5 4 9 9 C 1.53097 * 109.25851 * 301.32318 * 6 5 4 10 10 N 1.47011 * 109.50730 * 120.11596 * 2 1 3 11 11 C 1.46906 * 110.99675 * 302.32010 * 10 2 1 12 12 C 1.50700 * 109.47030 * 302.41167 * 11 10 2 13 13 C 1.38290 * 119.96995 * 90.00495 * 12 11 10 14 14 C 1.38244 * 120.11180 * 179.97438 * 13 12 11 15 15 C 1.38167 * 120.05373 * 0.02562 * 14 13 12 16 16 C 1.38711 * 119.94263 * 0.23663 * 15 14 13 17 17 O 1.35904 * 120.05009 * 179.71812 * 16 15 14 18 18 C 1.42900 * 117.00133 * 0.02562 * 17 16 15 19 19 C 1.53007 * 109.46861 * 179.97438 * 18 17 16 20 20 C 1.50696 * 109.46956 * 180.02562 * 19 18 17 21 21 H 1.08006 * 119.99977 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00047 * 179.97438 * 20 19 18 23 23 N 1.31521 * 119.99986 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00244 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47219 * 90.00158 * 24 22 20 26 26 H 1.48503 * 109.47180 * 210.00308 * 24 22 20 27 27 H 1.48507 * 109.46871 * 330.00120 * 24 22 20 28 28 C 1.38115 * 119.97180 * 269.97607 * 12 11 10 29 29 H 1.08999 * 109.46767 * 299.88864 * 1 2 3 30 30 H 1.09001 * 109.46855 * 59.88306 * 1 2 3 31 31 H 1.08995 * 109.47219 * 179.88983 * 1 2 3 32 32 H 1.09000 * 109.50178 * 63.28469 * 4 2 1 33 33 H 1.08992 * 109.50608 * 303.15435 * 4 2 1 34 34 H 1.09001 * 109.47025 * 179.80397 * 8 6 5 35 35 H 1.08997 * 109.47327 * 299.80208 * 8 6 5 36 36 H 1.09005 * 109.47283 * 59.80621 * 8 6 5 37 37 H 1.08995 * 109.51167 * 296.92174 * 9 6 5 38 38 H 1.08993 * 109.54199 * 176.80550 * 9 6 5 39 39 H 1.09000 * 109.46614 * 182.41407 * 11 10 2 40 40 H 1.09001 * 109.46755 * 62.41811 * 11 10 2 41 41 H 1.08007 * 119.94201 * 0.02562 * 13 12 11 42 42 H 1.07999 * 119.97240 * 180.02562 * 14 13 12 43 43 H 1.08002 * 120.02367 * 179.97438 * 15 14 13 44 44 H 1.08990 * 109.47307 * 299.99695 * 18 17 16 45 45 H 1.09002 * 109.47120 * 60.00371 * 18 17 16 46 46 H 1.09001 * 109.46754 * 300.00272 * 19 18 17 47 47 H 1.08994 * 109.46834 * 60.00150 * 19 18 17 48 48 H 0.96995 * 120.00071 * 179.97438 * 23 22 20 49 49 H 1.08001 * 120.03381 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0412 -0.7240 -1.2485 5 8 3.4693 -0.7868 -1.2058 6 6 3.9818 -1.4580 -0.0516 7 1 3.6301 -2.4896 -0.0444 8 6 5.5113 -1.4399 -0.0860 9 6 3.4904 -0.7415 1.2090 10 7 2.0209 -0.6953 1.1987 11 6 1.5055 -0.0645 2.4212 12 6 1.9098 1.3870 2.4464 13 6 1.0857 2.3435 1.8822 14 6 1.4534 3.6760 1.9041 15 6 2.6461 4.0551 2.4895 16 6 3.4770 3.0969 3.0512 17 8 4.6534 3.4668 3.6226 18 6 4.9711 4.8599 3.6098 19 6 6.3222 5.0811 4.2930 20 6 6.6570 6.5503 4.2802 21 1 5.9746 7.2558 3.8294 22 6 7.8344 6.9941 4.8439 23 7 8.6656 6.1350 5.3924 24 14 8.2498 8.8152 4.8273 25 1 7.7109 9.4571 6.0532 26 1 9.7244 8.9863 4.7863 27 1 7.6443 9.4501 3.6291 28 6 3.1028 1.7609 3.0333 29 1 -0.3633 0.5121 0.8910 30 1 -0.3633 0.5157 -0.8890 31 1 -0.3633 -1.0276 -0.0020 32 1 1.7273 -0.1794 -2.1390 33 1 1.6331 -1.7342 -1.2761 34 1 5.9006 -1.9486 0.7958 35 1 5.8606 -1.9501 -0.9836 36 1 5.8624 -0.4079 -0.0947 37 1 3.8863 0.2738 1.2284 38 1 3.8313 -1.2820 2.0919 39 1 1.9181 -0.5718 3.2933 40 1 0.4182 -0.1393 2.4379 41 1 0.1527 2.0492 1.4245 42 1 0.8079 4.4212 1.4632 43 1 2.9331 5.0962 2.5060 44 1 5.0228 5.2114 2.5794 45 1 4.1992 5.4136 4.1443 46 1 6.2700 4.7297 5.3235 47 1 7.0943 4.5274 3.7590 48 1 9.4941 6.4471 5.7886 49 1 3.7457 1.0137 3.4746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092017572.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:39 Heat of formation + Delta-G solvation = -83.203762 kcal Electronic energy + Delta-G solvation = -27318.099382 eV Core-core repulsion = 23630.260197 eV Total energy + Delta-G solvation = -3687.839184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.62941 -40.62947 -38.83319 -36.84319 -35.49166 -34.44691 -32.72396 -32.54554 -30.94945 -30.71017 -28.17775 -27.08993 -26.51674 -25.11506 -23.84131 -23.31170 -22.69150 -21.80439 -20.73638 -19.09010 -18.16137 -17.71155 -17.18033 -17.04071 -16.97480 -16.90194 -16.56388 -16.30235 -15.97734 -15.77124 -15.22956 -14.68685 -14.43922 -14.39869 -14.29875 -14.06654 -13.81738 -13.52380 -13.17886 -13.13609 -13.05658 -13.00785 -12.76781 -12.64270 -12.58951 -12.54851 -12.28389 -12.07459 -11.95952 -11.84470 -11.64518 -11.59867 -11.44818 -11.39551 -10.65465 -10.52907 -9.88237 -9.44754 -9.15238 -8.29943 -6.44160 0.26390 0.45750 1.38615 1.41020 1.52183 2.22636 2.46898 2.62763 2.81262 2.93364 3.04399 3.72541 3.74105 3.83735 3.93257 3.97313 4.12063 4.16767 4.16921 4.20072 4.21622 4.30234 4.34103 4.36734 4.49175 4.55678 4.67033 4.67182 4.70765 4.73642 4.74394 4.81552 4.89999 4.95158 5.01523 5.04249 5.10614 5.23137 5.26457 5.32905 5.39890 5.41460 5.46406 5.51475 5.64014 5.84495 5.91649 5.98122 6.03484 6.24540 6.50329 6.70280 7.26221 8.83272 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017279 B = 0.002710 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.079226 B =10328.657600 C =11191.844752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.037 3.963 3 H 0.037 0.963 4 C 0.066 3.934 5 O -0.407 6.407 6 C 0.091 3.909 7 H 0.076 0.924 8 C -0.146 4.146 9 C 0.017 3.983 10 N -0.514 5.514 11 C 0.093 3.907 12 C -0.082 4.082 13 C -0.151 4.151 14 C -0.079 4.079 15 C -0.224 4.224 16 C 0.106 3.894 17 O -0.342 6.342 18 C 0.086 3.914 19 C 0.030 3.970 20 C -0.548 4.548 21 H 0.070 0.930 22 C 0.002 3.998 23 N -0.931 5.931 24 Si 0.977 3.023 25 H -0.269 1.269 26 H -0.280 1.280 27 H -0.260 1.260 28 C -0.159 4.159 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.026 0.974 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.154 0.846 42 H 0.150 0.850 43 H 0.125 0.875 44 H 0.056 0.944 45 H 0.059 0.941 46 H -0.002 1.002 47 H -0.003 1.003 48 H 0.268 0.732 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.643 -15.772 -12.199 27.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 H 0.055 0.945 4 C -0.011 4.011 5 O -0.327 6.327 6 C 0.033 3.967 7 H 0.094 0.906 8 C -0.203 4.203 9 C -0.111 4.111 10 N -0.237 5.237 11 C -0.034 4.034 12 C -0.084 4.084 13 C -0.170 4.170 14 C -0.097 4.097 15 C -0.243 4.243 16 C 0.061 3.939 17 O -0.257 6.257 18 C 0.012 3.988 19 C -0.007 4.007 20 C -0.586 4.586 21 H 0.088 0.912 22 C -0.196 4.196 23 N -0.570 5.570 24 Si 0.800 3.200 25 H -0.194 1.194 26 H -0.205 1.205 27 H -0.184 1.184 28 C -0.178 4.178 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.131 0.869 41 H 0.172 0.828 42 H 0.168 0.832 43 H 0.143 0.857 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.017 0.983 47 H 0.016 0.984 48 H 0.076 0.924 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.385 -16.345 -12.189 28.134 hybrid contribution 1.136 1.989 0.604 2.369 sum -18.249 -14.357 -11.585 25.949 Atomic orbital electron populations 1.21908 0.91422 1.03514 1.03240 1.22428 0.97930 0.96138 0.90701 0.94488 1.22862 0.79867 1.00870 0.97487 1.87973 1.21983 1.78937 1.43788 1.22218 0.94922 0.95657 0.83876 0.90596 1.21781 0.92517 1.02328 1.03693 1.22905 0.88562 0.99816 0.99839 1.62775 1.07942 1.50913 1.02047 1.21408 1.02426 0.86438 0.93162 1.20572 0.93064 0.98464 0.96313 1.21386 1.01209 0.92122 1.02253 1.21262 0.94719 0.97314 0.96424 1.21509 0.97892 0.99414 1.05448 1.19543 0.85770 0.94854 0.93771 1.86082 1.36011 1.28846 1.74725 1.22844 0.98221 0.77614 1.00149 1.18947 0.90479 0.96585 0.94700 1.21385 1.05710 0.92501 1.38985 0.91198 1.26050 0.95771 1.03598 0.94218 1.70119 1.11487 1.36752 1.38602 0.85278 0.77461 0.78064 0.79227 1.19422 1.20544 1.18350 1.20456 0.99019 0.92704 1.05650 0.91126 0.90548 0.90867 0.87471 0.91387 0.89339 0.90956 0.93652 0.95521 0.88837 0.89229 0.86861 0.82838 0.83191 0.85731 0.92555 0.92248 0.98313 0.98444 0.92364 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.40 71.98 0.60 -0.96 16 2 C 0.04 0.63 1.97 44.93 0.09 0.72 16 3 H 0.04 0.84 6.22 -2.39 -0.01 0.82 16 4 C 0.07 1.14 6.29 72.02 0.45 1.59 16 5 O -0.41 -9.58 10.47 -148.98 -1.56 -11.14 16 6 C 0.09 1.86 3.42 30.63 0.10 1.96 16 7 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 8 C -0.15 -2.82 9.57 71.98 0.69 -2.13 16 9 C 0.02 0.37 4.41 86.31 0.38 0.75 16 10 N -0.51 -9.41 4.75 -874.50 -4.15 -13.56 16 11 C 0.09 1.62 5.17 85.56 0.44 2.06 16 12 C -0.08 -1.91 4.02 -19.88 -0.08 -1.99 16 13 C -0.15 -3.16 7.81 22.28 0.17 -2.98 16 14 C -0.08 -1.89 10.04 22.25 0.22 -1.67 16 15 C -0.22 -7.03 9.04 22.37 0.20 -6.83 16 16 C 0.11 3.84 6.69 22.51 0.15 3.99 16 17 O -0.34 -15.07 10.14 -92.47 -0.94 -16.01 16 18 C 0.09 3.90 4.68 71.98 0.34 4.23 16 19 C 0.03 1.68 5.34 29.85 0.16 1.84 16 20 C -0.55 -31.41 9.11 25.60 0.23 -31.17 16 21 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 22 C 0.00 0.13 5.46 84.65 0.46 0.60 16 23 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 24 Si 0.98 43.80 29.54 68.60 2.03 45.83 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 27 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 28 C -0.16 -4.84 7.97 22.36 0.18 -4.67 16 29 H 0.07 0.70 4.17 -2.39 -0.01 0.69 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.03 0.74 6.33 -2.39 -0.02 0.72 16 38 H 0.09 1.80 8.12 -2.39 -0.02 1.78 16 39 H 0.09 1.52 8.05 -2.39 -0.02 1.50 16 40 H 0.11 1.48 6.35 -2.39 -0.02 1.46 16 41 H 0.15 2.21 5.45 -2.91 -0.02 2.19 16 42 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 43 H 0.12 3.93 6.30 -2.91 -0.02 3.91 16 44 H 0.06 2.43 7.66 -2.39 -0.02 2.41 16 45 H 0.06 2.53 7.66 -2.39 -0.02 2.51 16 46 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 47 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 48 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 49 H 0.12 3.65 8.03 -2.91 -0.02 3.63 16 Total: -1.00 -69.48 378.77 1.39 -68.09 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.92 Total: 18.27 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 4.80 Total: -34.66 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: -3.87 Total: -70.38 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -2.50 Total: -27.15 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -69.48 1.39 -68.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092017572.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.114 kcal (2) G-P(sol) polarization free energy of solvation -69.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds