Wall clock time and date at job start Tue Mar 31 2020 12:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35991 * 117.00073 * 2 1 4 4 C 1.38561 * 120.07581 * 0.02562 * 3 2 1 5 5 C 1.38239 * 120.00501 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.14128 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.92352 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.47081 * 90.00044 * 7 6 5 9 9 C 1.48553 * 111.00004 * 69.87542 * 8 7 6 10 10 C 1.54381 * 104.59389 * 200.95997 * 9 8 7 11 11 C 1.54260 * 105.06213 * 23.85245 * 10 9 8 12 12 H 1.09005 * 110.32091 * 241.00543 * 11 10 9 13 13 C 1.52997 * 110.32807 * 118.89636 * 11 10 9 14 14 C 1.48558 * 111.00099 * 314.45116 * 8 7 6 15 15 C 1.38231 * 120.14549 * 0.27671 * 6 5 4 16 16 C 1.38564 * 120.00250 * 359.49393 * 15 6 5 17 17 O 1.36001 * 120.07531 * 180.25182 * 16 15 6 18 18 C 1.42899 * 116.99896 * 0.23206 * 17 16 15 19 19 C 1.52998 * 109.47266 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47440 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99643 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00061 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00010 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99850 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47137 * 60.00044 * 24 22 20 26 26 H 1.48495 * 109.47088 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47206 * 300.00145 * 24 22 20 28 28 H 1.09000 * 109.47218 * 59.99810 * 1 2 3 29 29 H 1.09004 * 109.47096 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46785 * 300.00065 * 1 2 3 31 31 H 1.08003 * 119.99677 * 0.04301 * 4 3 2 32 32 H 1.07994 * 119.93001 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.47406 * 329.99763 * 7 6 5 34 34 H 1.09000 * 109.47143 * 210.00042 * 7 6 5 35 35 H 1.08996 * 110.41658 * 82.17727 * 9 8 7 36 36 H 1.09004 * 110.51228 * 319.78094 * 9 8 7 37 37 H 1.09002 * 110.32600 * 264.95521 * 10 9 8 38 38 H 1.09002 * 110.41100 * 142.78805 * 10 9 8 39 39 H 1.09002 * 109.47153 * 61.45300 * 13 11 10 40 40 H 1.09001 * 109.46832 * 301.45491 * 13 11 10 41 41 H 1.09004 * 109.47261 * 181.45472 * 13 11 10 42 42 H 1.08997 * 110.40899 * 40.26303 * 14 8 7 43 43 H 1.09006 * 110.41652 * 277.82320 * 14 8 7 44 44 H 1.08006 * 120.00051 * 179.74697 * 15 6 5 45 45 H 1.09004 * 109.47257 * 300.00100 * 18 17 16 46 46 H 1.09002 * 109.47074 * 59.99926 * 18 17 16 47 47 H 1.09004 * 109.47263 * 300.00340 * 19 18 17 48 48 H 1.09002 * 109.46935 * 60.00084 * 19 18 17 49 49 H 0.97001 * 119.99504 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9225 3.6057 0.0000 6 6 3.3031 3.6797 -0.0005 7 6 3.9838 5.0242 -0.0005 8 7 4.2056 5.4608 1.3845 9 6 5.2445 4.6294 2.0449 10 6 4.9899 4.8164 3.5560 11 6 3.5062 5.2241 3.6651 12 1 3.4173 6.2121 4.1171 13 6 2.7306 4.1928 4.4871 14 6 2.9891 5.2492 2.2106 15 6 4.0603 2.5233 -0.0063 16 6 3.4360 1.2863 -0.0010 17 8 4.1795 0.1475 -0.0015 18 6 5.6003 0.3005 -0.0025 19 6 6.2618 -1.0791 -0.0023 20 6 7.7602 -0.9178 -0.0040 21 1 8.1969 0.0700 -0.0047 22 6 8.5734 -2.0312 -0.0036 23 7 8.0415 -3.2340 -0.0022 24 14 10.4307 -1.8312 -0.0050 25 1 10.8487 -1.0812 1.2066 26 1 11.0727 -3.1702 -0.0049 27 1 10.8471 -1.0832 -1.2183 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2147 2.3196 0.0017 32 1 1.3343 4.5114 0.0000 33 1 3.3537 5.7505 -0.5140 34 1 4.9417 4.9464 -0.5148 35 1 6.2405 4.9845 1.7803 36 1 5.1290 3.5817 1.7668 37 1 5.6294 5.6049 3.9529 38 1 5.1660 3.8825 4.0897 39 1 3.1406 4.1499 5.4962 40 1 2.8185 3.2132 4.0172 41 1 1.6803 4.4806 4.5336 42 1 2.5187 4.2990 1.9581 43 1 2.2869 6.0711 2.0709 44 1 5.1386 2.5839 -0.0108 45 1 5.9060 0.8503 -0.8927 46 1 5.9072 0.8503 0.8873 47 1 5.9561 -1.6285 0.8882 48 1 5.9550 -1.6293 -0.8918 49 1 8.6137 -4.0173 -0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092471602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:01 Heat of formation + Delta-G solvation = -73.997791 kcal Electronic energy + Delta-G solvation = -27650.984149 eV Core-core repulsion = 23963.544166 eV Total energy + Delta-G solvation = -3687.439984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.80597 -40.25794 -39.51295 -37.84288 -35.51849 -34.57347 -32.54524 -31.43442 -31.17313 -29.99408 -28.32494 -27.42000 -27.04892 -25.33939 -23.97681 -22.98874 -22.25751 -21.52140 -20.80758 -19.48036 -18.66919 -17.81944 -17.56082 -17.26541 -16.89648 -16.56548 -16.55062 -16.37917 -15.69031 -15.63216 -15.30193 -15.08371 -14.38319 -14.31480 -14.25735 -13.96210 -13.89762 -13.63191 -13.23856 -13.12681 -13.08401 -12.94745 -12.64750 -12.61244 -12.46228 -12.33768 -12.19179 -12.02735 -11.86036 -11.69275 -11.63493 -11.62568 -11.58340 -11.45232 -11.30922 -10.63328 -9.71781 -9.45540 -8.74385 -8.27828 -6.42368 0.24226 0.38610 1.39370 1.43752 1.51762 2.24174 2.38482 2.48490 2.63744 3.06240 3.17707 3.67367 3.69369 3.81599 3.83430 4.01301 4.04507 4.16271 4.20082 4.22755 4.34589 4.36293 4.39560 4.40507 4.51004 4.58026 4.63293 4.66238 4.70485 4.71324 4.79208 4.83227 4.86943 4.93881 4.99333 5.11644 5.15898 5.21103 5.23762 5.26362 5.28761 5.39855 5.42563 5.52719 5.64834 5.74415 5.89383 6.02858 6.03714 6.20783 6.67298 6.72041 7.27891 8.85293 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.003865 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.022562 B = 7241.952038 C = 8971.388746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.076 3.924 4 C -0.165 4.165 5 C -0.099 4.099 6 C -0.115 4.115 7 C 0.086 3.914 8 N -0.498 5.498 9 C 0.017 3.983 10 C -0.122 4.122 11 C -0.094 4.094 12 H 0.089 0.911 13 C -0.141 4.141 14 C 0.021 3.979 15 C -0.169 4.169 16 C 0.069 3.931 17 O -0.336 6.336 18 C 0.088 3.912 19 C 0.032 3.968 20 C -0.547 4.547 21 H 0.071 0.929 22 C 0.003 3.997 23 N -0.931 5.931 24 Si 0.976 3.024 25 H -0.263 1.263 26 H -0.281 1.281 27 H -0.263 1.263 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.035 0.965 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.034 0.966 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.094 0.906 44 H 0.126 0.874 45 H 0.057 0.943 46 H 0.055 0.945 47 H -0.005 1.005 48 H -0.004 1.004 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.063 20.279 4.085 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.031 3.969 4 C -0.184 4.184 5 C -0.118 4.118 6 C -0.117 4.117 7 C -0.042 4.042 8 N -0.220 5.220 9 C -0.111 4.111 10 C -0.160 4.160 11 C -0.113 4.113 12 H 0.107 0.893 13 C -0.199 4.199 14 C -0.106 4.106 15 C -0.188 4.188 16 C 0.024 3.976 17 O -0.251 6.251 18 C 0.013 3.987 19 C -0.006 4.006 20 C -0.585 4.585 21 H 0.089 0.911 22 C -0.196 4.196 23 N -0.570 5.570 24 Si 0.799 3.201 25 H -0.188 1.188 26 H -0.206 1.206 27 H -0.188 1.188 28 H 0.089 0.911 29 H 0.127 0.873 30 H 0.088 0.912 31 H 0.182 0.818 32 H 0.177 0.823 33 H 0.127 0.873 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.112 0.888 44 H 0.144 0.856 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.013 0.987 48 H 0.014 0.986 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.837 20.288 4.049 26.054 hybrid contribution 0.801 -1.570 -0.102 1.765 sum -15.036 18.718 3.947 24.332 Atomic orbital electron populations 1.23352 0.76394 1.05305 1.02518 1.86192 1.23545 1.26761 1.89175 1.18640 0.88969 0.86316 1.02990 1.21327 1.01020 0.90389 1.05617 1.21044 0.93269 0.97804 0.99691 1.20377 0.94532 0.95550 1.01282 1.21383 1.00805 0.90596 0.91434 1.65837 1.06325 1.48444 1.01368 1.23255 0.96889 0.96043 0.94933 1.22392 0.97128 1.01570 0.94940 1.21877 0.94094 1.00014 0.95274 0.89306 1.21830 1.00686 0.97675 0.99715 1.23520 0.93166 1.01770 0.92165 1.21093 1.00317 0.90861 1.06554 1.18905 0.89465 0.86710 1.02536 1.86183 1.20290 1.29845 1.88766 1.22810 0.75907 0.99997 0.99965 1.18924 0.94842 0.91042 0.95744 1.21338 0.90941 0.93719 1.52460 0.91133 1.26051 1.04973 0.94529 0.94008 1.70126 1.37780 0.98666 1.50432 0.85334 0.77624 0.77613 0.79490 1.18753 1.20646 1.18763 0.91106 0.87254 0.91159 0.81768 0.82341 0.87312 0.90269 0.90116 0.94712 0.90313 0.92131 0.91989 0.94688 0.91334 0.92629 0.88776 0.85610 0.92501 0.92712 0.98651 0.98597 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.34 -11.41 10.28 -79.58 -0.82 -12.23 16 3 C 0.08 2.47 6.70 22.57 0.15 2.62 16 4 C -0.17 -3.72 9.04 22.35 0.20 -3.52 16 5 C -0.10 -1.99 7.48 22.28 0.17 -1.82 16 6 C -0.12 -2.76 3.84 -19.86 -0.08 -2.84 16 7 C 0.09 1.69 5.75 85.56 0.49 2.19 16 8 N -0.50 -10.20 5.65 -886.05 -5.01 -15.21 16 9 C 0.02 0.39 6.32 86.45 0.55 0.94 16 10 C -0.12 -2.50 6.65 31.49 0.21 -2.29 16 11 C -0.09 -1.65 3.65 -9.90 -0.04 -1.69 16 12 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 13 C -0.14 -2.46 8.91 71.98 0.64 -1.82 16 14 C 0.02 0.39 5.52 86.45 0.48 0.86 16 15 C -0.17 -5.34 7.03 22.35 0.16 -5.18 16 16 C 0.07 2.62 6.70 22.57 0.15 2.77 16 17 O -0.34 -15.67 9.92 -79.70 -0.79 -16.46 16 18 C 0.09 4.09 4.68 71.98 0.34 4.43 16 19 C 0.03 1.82 5.34 29.85 0.16 1.97 16 20 C -0.55 -31.71 9.11 25.60 0.23 -31.48 16 21 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 22 C 0.00 0.18 5.46 84.65 0.46 0.64 16 23 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 24 Si 0.98 44.14 29.54 68.60 2.03 46.17 16 25 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 27 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 28 H 0.07 1.08 7.67 -2.39 -0.02 1.06 16 29 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.07 1.07 7.66 -2.39 -0.02 1.05 16 31 H 0.16 2.50 6.30 -2.91 -0.02 2.48 16 32 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 33 H 0.11 1.66 8.08 -2.38 -0.02 1.64 16 34 H 0.08 1.64 8.02 -2.39 -0.02 1.62 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.03 0.97 5.26 -2.38 -0.01 0.95 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.34 7.71 -2.39 -0.02 1.32 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.03 0.75 8.12 -2.39 -0.02 0.73 16 41 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.06 1.14 4.47 -2.39 -0.01 1.13 16 43 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.13 4.10 5.76 -2.91 -0.02 4.09 16 45 H 0.06 2.50 7.65 -2.38 -0.02 2.48 16 46 H 0.05 2.42 7.67 -2.39 -0.02 2.40 16 47 H 0.00 -0.31 8.14 -2.38 -0.02 -0.33 16 48 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 49 H 0.27 15.49 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -72.44 383.77 2.01 -70.44 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.92 Total: 17.60 kcal Atomic # 6 Polarization: -38.12 SS G_CDS: 5.39 Total: -32.74 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -4.72 Total: -72.78 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -1.61 Total: -28.69 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -72.44 2.01 -70.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092471602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.562 kcal (2) G-P(sol) polarization free energy of solvation -72.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds