Wall clock time and date at job start Tue Mar 31 2020 12:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.51074 * 2 1 4 4 O 1.43017 * 109.51043 * 120.13320 * 2 1 3 5 5 C 1.43012 * 113.74162 * 178.60738 * 4 2 1 6 6 C 1.53096 * 109.25558 * 301.32807 * 5 4 2 7 7 N 1.47010 * 109.26081 * 56.85321 * 6 5 4 8 8 C 1.46897 * 111.00224 * 177.60962 * 7 6 5 9 9 C 1.50701 * 109.47005 * 293.62767 * 8 7 6 10 10 C 1.38291 * 119.96877 * 89.99664 * 9 8 7 11 11 C 1.38248 * 120.11188 * 180.02562 * 10 9 8 12 12 C 1.38165 * 120.05352 * 359.97438 * 11 10 9 13 13 C 1.38715 * 119.94424 * 359.97438 * 12 11 10 14 14 O 1.35903 * 120.05514 * 179.72952 * 13 12 11 15 15 C 1.42908 * 116.99891 * 359.97438 * 14 13 12 16 16 C 1.53006 * 109.46797 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.46654 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00234 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99596 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00316 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99757 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47285 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46795 * 120.00247 * 21 19 17 24 24 H 1.48503 * 109.46985 * 239.99827 * 21 19 17 25 25 C 1.38119 * 119.97661 * 270.00175 * 9 8 7 26 26 C 1.47019 * 110.74972 * 301.38108 * 7 6 5 27 27 H 1.09000 * 109.50884 * 178.55147 * 26 7 6 28 28 C 1.53003 * 109.50453 * 298.68406 * 26 7 6 29 29 H 1.09001 * 109.47336 * 180.08591 * 1 2 3 30 30 H 1.08998 * 109.47437 * 300.08491 * 1 2 3 31 31 H 1.09002 * 109.47410 * 60.08558 * 1 2 3 32 32 H 1.09004 * 109.50888 * 61.26280 * 5 4 2 33 33 H 1.09004 * 109.50529 * 181.34818 * 5 4 2 34 34 H 1.09000 * 109.50916 * 296.90891 * 6 5 4 35 35 H 1.09007 * 109.50252 * 176.78673 * 6 5 4 36 36 H 1.09001 * 109.47267 * 173.63523 * 8 7 6 37 37 H 1.08996 * 109.47263 * 53.62960 * 8 7 6 38 38 H 1.08000 * 119.94409 * 0.02955 * 10 9 8 39 39 H 1.07993 * 119.97213 * 179.97438 * 11 10 9 40 40 H 1.08000 * 120.02874 * 179.97438 * 12 11 10 41 41 H 1.08998 * 109.46878 * 300.00363 * 15 14 13 42 42 H 1.08998 * 109.46983 * 60.00341 * 15 14 13 43 43 H 1.08998 * 109.47012 * 299.99998 * 16 15 14 44 44 H 1.08998 * 109.46869 * 59.99959 * 16 15 14 45 45 H 0.97004 * 119.99881 * 180.02562 * 20 19 17 46 46 H 1.07998 * 120.02414 * 0.02562 * 25 9 8 47 47 H 1.08998 * 109.47219 * 60.00078 * 28 26 7 48 48 H 1.09001 * 109.46565 * 180.02562 * 28 26 7 49 49 H 1.08994 * 109.46954 * 299.99338 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 8 2.0076 -0.6767 1.1659 5 6 3.4334 -0.7573 1.2413 6 6 3.9639 -1.4883 0.0051 7 7 3.5093 -0.7879 -1.2048 8 6 4.0446 -1.4258 -2.4149 9 6 5.5415 -1.2562 -2.4519 10 6 6.3591 -2.2069 -1.8686 11 6 7.7328 -2.0539 -1.9003 12 6 8.2921 -0.9506 -2.5158 13 6 7.4742 0.0038 -3.1026 14 8 8.0218 1.0927 -3.7038 15 6 9.4474 1.1909 -3.6939 16 6 9.8752 2.4730 -4.4111 17 6 11.3787 2.5762 -4.4012 18 1 11.9698 1.8049 -3.9302 19 6 11.9994 3.6554 -4.9936 20 7 11.2794 4.5950 -5.5668 21 14 13.8629 3.7838 -4.9807 22 1 14.4353 2.6077 -4.2778 23 1 14.3663 3.8184 -6.3775 24 1 14.2686 5.0273 -4.2774 25 6 6.0959 -0.1515 -3.0683 26 6 2.0412 -0.7234 -1.2487 27 1 1.7273 -0.1786 -2.1391 28 6 1.4685 -2.1416 -1.2880 29 1 -0.3634 -1.0277 0.0015 30 1 -0.3634 0.5151 0.8892 31 1 -0.3634 0.5125 -0.8907 32 1 3.8534 0.2479 1.2778 33 1 3.7201 -1.3043 2.1395 34 1 3.5866 -2.5110 -0.0028 35 1 5.0536 -1.5020 0.0301 36 1 3.6043 -0.9598 -3.2964 37 1 3.7994 -2.4878 -2.4046 38 1 5.9238 -3.0702 -1.3874 39 1 8.3691 -2.7975 -1.4437 40 1 9.3652 -0.8314 -2.5400 41 1 9.8028 1.2153 -2.6638 42 1 9.8746 0.3283 -4.2052 43 1 9.5198 2.4489 -5.4412 44 1 9.4480 3.3353 -3.8994 45 1 11.7162 5.3541 -5.9839 46 1 5.4569 0.5909 -3.5233 47 1 1.7814 -2.6847 -0.3962 48 1 0.3800 -2.0930 -1.3210 49 1 1.8358 -2.6573 -2.1751 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093418034.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:41 Heat of formation + Delta-G solvation = -63.019915 kcal Electronic energy + Delta-G solvation = -26666.543915 eV Core-core repulsion = 22979.579968 eV Total energy + Delta-G solvation = -3686.963947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.59306 -39.65001 -37.53662 -35.95149 -33.76527 -33.37020 -31.66940 -30.77059 -29.23758 -29.07879 -28.47434 -26.07243 -25.00541 -24.04662 -23.08012 -22.11170 -21.55327 -20.13618 -19.37271 -17.64154 -16.75910 -16.60937 -16.27939 -16.05575 -15.67274 -15.58607 -15.36497 -15.29481 -14.64104 -14.43362 -14.14149 -13.89253 -13.40147 -13.17992 -12.99712 -12.91118 -12.62247 -12.47267 -12.34586 -12.25787 -12.14750 -11.88370 -11.52449 -11.45158 -11.35146 -11.20992 -11.07260 -10.89592 -10.70406 -10.63820 -10.45133 -9.86826 -9.81239 -9.66375 -9.29225 -8.78842 -8.51869 -8.45634 -7.84195 -6.11131 -4.15735 1.42660 1.65667 3.25883 3.32929 3.36515 3.44274 3.53770 3.82139 4.05778 4.38675 4.40863 4.59085 4.68216 4.73350 4.87632 4.91776 4.97906 5.01967 5.08726 5.11880 5.25354 5.25562 5.28003 5.29770 5.37373 5.40544 5.45747 5.50657 5.56072 5.67471 5.68135 5.69210 5.82910 5.85101 5.94360 6.02953 6.05537 6.17391 6.53291 6.56389 6.60529 6.70320 6.73305 6.78444 6.95040 6.97882 7.50448 7.63558 7.80925 8.06127 8.23196 8.90086 9.48661 11.00472 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.023191 B = 0.002174 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.058795 B =12875.754638 C =13298.378983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.094 3.906 3 H 0.067 0.933 4 O -0.382 6.382 5 C 0.065 3.935 6 C 0.011 3.989 7 N -0.523 5.523 8 C 0.097 3.903 9 C -0.046 4.046 10 C -0.168 4.168 11 C -0.080 4.080 12 C -0.211 4.211 13 C 0.146 3.854 14 O -0.315 6.315 15 C 0.066 3.934 16 C 0.025 3.975 17 C -0.526 4.526 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.889 5.889 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.139 4.139 26 C 0.049 3.951 27 H 0.092 0.908 28 C -0.184 4.184 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.045 0.955 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.129 0.871 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.263 0.737 46 H 0.128 0.872 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.352 -14.895 11.096 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.036 3.964 3 H 0.085 0.915 4 O -0.301 6.301 5 C -0.012 4.012 6 C -0.117 4.117 7 N -0.247 5.247 8 C -0.029 4.029 9 C -0.047 4.047 10 C -0.186 4.186 11 C -0.098 4.098 12 C -0.230 4.230 13 C 0.099 3.901 14 O -0.229 6.229 15 C -0.008 4.008 16 C -0.012 4.012 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.158 4.158 26 C -0.060 4.060 27 H 0.110 0.890 28 C -0.243 4.243 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.063 0.937 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.147 0.853 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.146 0.854 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.365 -14.138 11.051 27.143 hybrid contribution 1.284 -0.723 -0.248 1.494 sum -19.081 -14.860 10.803 26.488 Atomic orbital electron populations 1.21831 0.92930 1.03015 1.02644 1.22132 0.94674 0.95469 0.84086 0.91488 1.87956 1.21141 1.78330 1.42702 1.22644 0.80817 1.00603 0.97177 1.22900 1.02008 0.96257 0.90489 1.62407 1.07761 1.52652 1.01892 1.21024 0.91300 0.97568 0.93058 1.19326 0.94189 0.94038 0.97128 1.20766 0.93500 1.00116 1.04259 1.20836 0.94706 0.96693 0.97597 1.21387 1.00481 0.96683 1.04473 1.19197 0.92644 0.86964 0.91323 1.86180 1.25696 1.39257 1.71718 1.23328 0.74889 1.02085 1.00548 1.19131 0.96032 0.89939 0.96129 1.21006 0.90732 1.07369 1.37277 0.92324 1.24997 0.98684 0.95511 0.95052 1.69989 1.35387 1.10672 1.36688 0.86433 0.85015 0.78108 0.77840 1.19649 1.20837 1.20817 1.20240 0.92024 0.99128 1.04458 1.22410 0.87443 0.96454 0.99657 0.88965 1.22433 1.01925 0.97769 1.02172 0.91568 0.91669 0.90930 0.92193 0.88567 0.93733 0.88883 0.89707 0.93525 0.86874 0.86254 0.85285 0.93152 0.93165 0.95400 0.95375 0.92752 0.85440 0.91747 0.91570 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.13 37.15 0.34 -0.64 16 2 C 0.09 0.83 3.11 -26.68 -0.08 0.74 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 4 O -0.38 -3.89 9.92 -35.23 -0.35 -4.24 16 5 C 0.06 0.59 7.01 37.21 0.26 0.85 16 6 C 0.01 0.11 4.88 -3.71 -0.02 0.09 16 7 N -0.52 -5.28 4.67 -227.77 -1.06 -6.34 16 8 C 0.10 0.98 4.48 -4.98 -0.02 0.96 16 9 C -0.05 -0.58 4.89 -104.65 -0.51 -1.09 16 10 C -0.17 -1.98 7.93 -39.56 -0.31 -2.29 16 11 C -0.08 -1.03 10.04 -39.60 -0.40 -1.42 16 12 C -0.21 -3.29 9.04 -39.43 -0.36 -3.64 16 13 C 0.15 2.55 6.69 -39.22 -0.26 2.28 16 14 O -0.32 -6.55 10.14 -19.43 -0.20 -6.75 16 15 C 0.07 1.41 4.68 37.16 0.17 1.59 16 16 C 0.02 0.65 5.34 -27.88 -0.15 0.50 16 17 C -0.53 -14.68 9.11 -34.44 -0.31 -14.99 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 21 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C -0.14 -2.12 9.64 -39.44 -0.38 -2.50 16 26 C 0.05 0.42 2.54 -67.59 -0.17 0.25 16 27 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 28 C -0.18 -1.40 7.95 37.16 0.30 -1.10 16 29 H 0.07 0.43 6.39 -51.93 -0.33 0.10 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.04 0.40 6.39 -51.93 -0.33 0.07 16 35 H 0.09 0.94 6.01 -51.92 -0.31 0.63 16 36 H 0.08 0.82 7.98 -51.93 -0.41 0.40 16 37 H 0.05 0.43 6.84 -51.93 -0.36 0.07 16 38 H 0.11 1.09 8.00 -52.49 -0.42 0.67 16 39 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.13 1.99 6.30 -52.49 -0.33 1.66 16 41 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 42 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 47 H 0.06 0.55 6.07 -51.93 -0.31 0.24 16 48 H 0.07 0.43 6.39 -51.93 -0.33 0.10 16 49 H 0.06 0.41 6.69 -51.93 -0.35 0.07 16 LS Contribution 380.42 15.07 5.73 5.73 Total: -1.00 -30.61 380.42 -10.22 -40.83 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -8.05 Total: -0.92 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -2.01 Total: -18.81 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: -0.33 Total: -32.11 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -0.55 Total: -10.99 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.61 -10.22 -40.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093418034.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.191 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds