Wall clock time and date at job start Tue Mar 31 2020 13:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47153 * 2 1 4 4 C 1.50709 * 109.47206 * 240.00618 * 2 1 3 5 5 H 1.07995 * 119.99405 * 239.99676 * 4 2 1 6 6 C 1.37874 * 119.99851 * 59.99415 * 4 2 1 7 7 N 1.31505 * 120.00370 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99667 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46961 * 60.00220 * 8 6 4 10 10 H 1.48492 * 109.47294 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47081 * 300.00220 * 8 6 4 12 12 N 1.46893 * 109.47313 * 120.00188 * 2 1 3 13 13 C 1.46904 * 111.00187 * 58.95815 * 12 2 1 14 14 C 1.46904 * 111.00225 * 294.99869 * 12 2 1 15 15 C 1.50696 * 109.47246 * 189.99900 * 14 12 2 16 16 C 1.38268 * 119.94323 * 90.00355 * 15 14 12 17 17 C 1.38139 * 120.05525 * 179.97438 * 16 15 14 18 18 C 1.38733 * 119.94491 * 0.02562 * 17 16 15 19 19 O 1.35905 * 120.05258 * 180.02562 * 18 17 16 20 20 C 1.42901 * 116.99604 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.47046 * 179.97438 * 20 19 18 22 22 H 1.09000 * 109.82650 * 305.70014 * 21 20 19 23 23 C 1.54383 * 109.83088 * 184.81324 * 21 20 19 24 24 C 1.55454 * 102.18758 * 219.18234 * 23 21 20 25 25 C 1.54956 * 100.98750 * 34.04004 * 24 23 21 26 26 O 1.43243 * 109.82797 * 66.59108 * 21 20 19 27 27 C 1.38722 * 119.88959 * 0.27067 * 18 17 16 28 28 C 1.38150 * 119.94161 * 359.47389 * 27 18 17 29 29 H 1.09003 * 109.46823 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47416 * 299.99285 * 1 2 3 31 31 H 1.09005 * 109.47352 * 60.00216 * 1 2 3 32 32 H 0.96999 * 120.00174 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46445 * 296.04678 * 13 12 2 34 34 H 1.08991 * 109.46885 * 56.04348 * 13 12 2 35 35 H 1.09002 * 109.47257 * 176.04614 * 13 12 2 36 36 H 1.09004 * 109.46589 * 69.99770 * 14 12 2 37 37 H 1.08997 * 109.46985 * 310.00519 * 14 12 2 38 38 H 1.08000 * 119.96731 * 0.02562 * 16 15 14 39 39 H 1.08005 * 120.02930 * 179.97438 * 17 16 15 40 40 H 1.08996 * 109.47352 * 299.99771 * 20 19 18 41 41 H 1.08999 * 109.47144 * 59.99795 * 20 19 18 42 42 H 1.09004 * 110.84851 * 337.31955 * 23 21 20 43 43 H 1.08999 * 110.84934 * 100.93997 * 23 21 20 44 44 H 1.08999 * 111.06135 * 276.12558 * 24 23 21 45 45 H 1.08996 * 111.18375 * 152.00694 * 24 23 21 46 46 H 1.08996 * 110.30889 * 204.68862 * 25 24 23 47 47 H 1.08998 * 110.38663 * 82.56455 * 25 24 23 48 48 H 1.08006 * 120.03385 * 179.72149 * 27 18 17 49 49 H 1.08007 * 119.97071 * 180.23081 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5883 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.8258 -2.5200 -4.0079 10 1 1.8269 -0.4197 -5.2205 11 1 3.8063 -1.1206 -4.0083 12 7 2.0196 -0.6925 1.1993 13 6 1.5284 -2.0762 1.2458 14 6 1.6487 0.0391 2.4181 15 6 2.3680 -0.5572 3.6005 16 6 3.6111 -0.0754 3.9669 17 6 4.2722 -0.6200 5.0507 18 6 3.6880 -1.6516 5.7713 19 8 4.3363 -2.1886 6.8383 20 6 3.6747 -3.2473 7.5336 21 6 4.5512 -3.7208 8.6948 22 1 5.5416 -3.9871 8.3256 23 6 3.9007 -4.9432 9.3775 24 6 4.1852 -4.6693 10.8810 25 6 4.0975 -3.1228 10.9213 26 8 4.6610 -2.6826 9.6755 27 6 2.4435 -2.1374 5.3979 28 6 1.7841 -1.5858 4.3165 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.7094 1.1619 -3.4843 33 1 0.4420 -2.0731 1.3346 34 1 1.8168 -2.5950 0.3317 35 1 1.9618 -2.5870 2.1057 36 1 0.5722 -0.0346 2.5725 37 1 1.9297 1.0869 2.3125 38 1 4.0651 0.7280 3.4058 39 1 5.2434 -0.2435 5.3364 40 1 2.7213 -2.8877 7.9208 41 1 3.4990 -4.0774 6.8494 42 1 2.8282 -4.9702 9.1845 43 1 4.3777 -5.8681 9.0532 44 1 5.1809 -5.0137 11.1603 45 1 3.4232 -5.1226 11.5150 46 1 4.6773 -2.7326 11.7577 47 1 3.0584 -2.8033 11.0004 48 1 1.9886 -2.9435 5.9545 49 1 0.8134 -1.9612 4.0276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093793090.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:46 Heat of formation + Delta-G solvation = -70.817019 kcal Electronic energy + Delta-G solvation = -26388.509565 eV Core-core repulsion = 22701.207510 eV Total energy + Delta-G solvation = -3687.302055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28709 -40.35445 -39.28806 -37.84382 -34.79108 -33.24194 -32.52552 -31.93675 -31.42306 -29.96473 -27.93380 -27.15047 -26.83963 -24.95355 -23.75816 -22.77993 -22.23351 -21.81282 -20.88955 -19.09409 -18.23167 -18.10600 -17.28625 -17.09813 -16.72744 -16.41364 -16.31601 -16.11486 -15.52654 -15.37474 -15.02632 -14.74648 -14.47675 -14.40069 -14.24710 -14.18602 -13.50818 -13.38573 -13.36807 -12.99266 -12.78030 -12.68929 -12.61215 -12.56155 -12.43008 -12.26600 -12.23871 -12.18070 -12.00506 -11.80385 -11.71315 -11.64789 -11.57895 -10.89906 -10.53387 -10.47575 -9.89243 -9.08488 -8.76438 -8.08705 -6.19514 0.44248 0.48126 1.43617 1.45320 1.52775 2.18105 2.44109 2.79095 2.87932 3.19999 3.51234 3.61610 3.72656 3.88593 3.91442 3.96095 4.05060 4.11036 4.15425 4.29911 4.36906 4.38819 4.47874 4.55892 4.59933 4.65935 4.69639 4.79172 4.80151 4.82093 4.88792 4.91069 4.91672 4.94084 5.02243 5.13109 5.17427 5.20731 5.23250 5.33482 5.40964 5.56372 5.71953 5.79504 5.80957 5.84681 6.06458 6.21456 6.49409 6.51655 6.76259 6.93904 7.49347 8.96901 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.031335 B = 0.002064 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.341239 B =13560.594174 C =13745.065651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.006 0.994 4 C -0.514 4.514 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.920 5.920 8 Si 0.959 3.041 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.540 5.540 13 C 0.041 3.959 14 C 0.098 3.902 15 C -0.113 4.113 16 C -0.068 4.068 17 C -0.161 4.161 18 C 0.116 3.884 19 O -0.325 6.325 20 C 0.044 3.956 21 C 0.078 3.922 22 H 0.085 0.915 23 C -0.142 4.142 24 C -0.149 4.149 25 C 0.035 3.965 26 O -0.402 6.402 27 C -0.206 4.206 28 C -0.076 4.076 29 H 0.032 0.968 30 H 0.026 0.974 31 H 0.061 0.939 32 H 0.261 0.739 33 H 0.018 0.982 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.036 0.964 37 H 0.066 0.934 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.092 0.908 47 H 0.064 0.936 48 H 0.148 0.852 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.384 -12.130 27.230 30.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.107 3.893 3 H 0.024 0.976 4 C -0.553 4.553 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.785 3.215 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.263 5.263 13 C -0.107 4.107 14 C -0.029 4.029 15 C -0.114 4.114 16 C -0.087 4.087 17 C -0.180 4.180 18 C 0.071 3.929 19 O -0.239 6.239 20 C -0.031 4.031 21 C 0.020 3.980 22 H 0.103 0.897 23 C -0.180 4.180 24 C -0.186 4.186 25 C -0.041 4.041 26 O -0.322 6.322 27 C -0.224 4.224 28 C -0.095 4.095 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.123 0.877 44 H 0.103 0.897 45 H 0.123 0.877 46 H 0.110 0.890 47 H 0.082 0.918 48 H 0.166 0.834 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.095 -11.783 27.111 29.843 hybrid contribution -0.951 -0.114 -1.175 1.516 sum 3.144 -11.897 25.936 28.707 Atomic orbital electron populations 1.22198 1.00256 0.99205 1.00057 1.19080 0.90087 0.92968 0.87116 0.97564 1.21346 1.30569 1.12438 0.90911 0.92612 1.25689 0.95477 0.95864 1.01805 1.70001 1.37864 1.24109 1.24015 0.85603 0.78639 0.78686 0.78619 1.19643 1.21029 1.19976 1.62251 1.59847 1.02696 1.01525 1.22200 0.96808 0.90330 1.01351 1.20914 0.96437 0.97353 0.88243 1.19761 0.96109 0.98602 0.96943 1.20932 0.93651 0.99176 0.94945 1.20529 1.01917 0.98256 0.97292 1.19100 0.91893 0.93952 0.87980 1.86085 1.46141 1.51019 1.40660 1.23505 0.96568 0.89249 0.93798 1.22909 0.99472 0.87847 0.87759 0.89689 1.23162 1.02634 0.97168 0.95008 1.23300 1.04210 0.94878 0.96209 1.23647 0.98968 0.95081 0.86398 1.88530 1.81859 1.40089 1.21754 1.21329 0.95596 1.04417 1.01097 1.20977 0.99861 0.94627 0.94031 0.94919 0.95501 0.92033 0.93006 0.96307 0.92800 0.91480 0.94577 0.91565 0.85243 0.84673 0.91275 0.89303 0.88992 0.87690 0.89740 0.87664 0.88970 0.91806 0.83398 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.69 8.27 71.98 0.60 -7.10 16 2 C 0.21 11.01 2.34 44.17 0.10 11.11 16 3 H 0.01 0.37 8.03 -2.39 -0.02 0.35 16 4 C -0.51 -28.58 7.88 25.60 0.20 -28.38 16 5 H 0.06 3.10 6.77 -2.91 -0.02 3.08 16 6 C 0.01 0.56 5.30 84.66 0.45 1.01 16 7 N -0.92 -53.22 11.32 21.44 0.24 -52.97 16 8 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 12 N -0.54 -23.49 4.73 -906.04 -4.29 -27.78 16 13 C 0.04 1.63 8.37 127.69 1.07 2.69 16 14 C 0.10 3.62 4.56 85.55 0.39 4.01 16 15 C -0.11 -3.63 4.89 -19.85 -0.10 -3.73 16 16 C -0.07 -2.11 9.69 22.25 0.22 -1.89 16 17 C -0.16 -4.62 9.99 22.36 0.22 -4.39 16 18 C 0.12 3.16 6.69 22.50 0.15 3.31 16 19 O -0.32 -8.36 10.12 -90.14 -0.91 -9.28 16 20 C 0.04 0.77 4.27 71.98 0.31 1.07 16 21 C 0.08 1.20 3.81 31.06 0.12 1.32 16 22 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 23 C -0.14 -1.12 6.56 31.91 0.21 -0.91 16 24 C -0.15 -1.03 7.16 32.11 0.23 -0.80 16 25 C 0.03 0.42 7.78 72.65 0.57 0.99 16 26 O -0.40 -8.15 11.00 -146.64 -1.61 -9.77 16 27 C -0.21 -5.07 9.04 22.36 0.20 -4.86 16 28 C -0.08 -2.11 7.95 22.25 0.18 -1.94 16 29 H 0.03 1.53 6.48 -2.39 -0.02 1.51 16 30 H 0.03 1.16 6.75 -2.39 -0.02 1.14 16 31 H 0.06 3.34 6.07 -2.38 -0.01 3.32 16 32 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.02 0.71 6.51 -2.39 -0.02 0.69 16 34 H 0.05 2.31 6.41 -2.39 -0.02 2.29 16 35 H 0.07 2.32 6.16 -2.39 -0.01 2.30 16 36 H 0.04 1.30 6.88 -2.38 -0.02 1.28 16 37 H 0.07 2.50 7.94 -2.39 -0.02 2.48 16 38 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 39 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 40 H 0.07 1.14 7.67 -2.39 -0.02 1.12 16 41 H 0.09 1.22 7.65 -2.39 -0.02 1.20 16 42 H 0.09 0.55 7.85 -2.39 -0.02 0.53 16 43 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.15 2.72 6.30 -2.91 -0.02 2.70 16 49 H 0.13 3.27 8.03 -2.91 -0.02 3.25 16 Total: -1.00 -66.36 381.36 1.49 -64.87 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.92 Total: 17.22 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 5.11 Total: -28.48 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -4.05 Total: -80.75 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -2.53 Total: -19.04 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -66.36 1.49 -64.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093793090.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.945 kcal (2) G-P(sol) polarization free energy of solvation -66.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds