Wall clock time and date at job start Tue Mar 31 2020 12:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35893 * 116.99620 * 2 1 4 4 C 1.38758 * 120.06054 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94380 * 179.97438 * 4 3 2 6 6 C 1.38284 * 120.05894 * 0.02562 * 5 4 3 7 7 C 1.38251 * 120.11218 * 359.74402 * 6 5 4 8 8 C 1.38164 * 120.05110 * 0.50651 * 7 6 5 9 9 C 1.50703 * 120.02552 * 179.76900 * 8 7 6 10 10 C 1.53004 * 109.46981 * 264.72593 * 9 8 7 11 11 H 1.09000 * 109.47471 * 304.99921 * 10 9 8 12 12 C 1.53001 * 109.47146 * 65.00034 * 10 9 8 13 13 C 1.53005 * 109.47020 * 185.00058 * 10 9 8 14 14 C 1.50699 * 109.47114 * 175.00066 * 13 10 9 15 15 O 1.21281 * 119.99722 * 0.02562 * 14 13 10 16 16 N 1.34771 * 120.00070 * 180.02562 * 14 13 10 17 17 C 1.46505 * 119.99781 * 359.97438 * 16 14 13 18 18 C 1.46500 * 120.00141 * 180.02562 * 16 14 13 19 19 H 1.09000 * 109.47175 * 359.97438 * 18 16 14 20 20 C 1.53006 * 109.46998 * 119.99854 * 18 16 14 21 21 C 1.50697 * 109.46896 * 239.99783 * 18 16 14 22 22 H 1.07994 * 120.00496 * 0.02562 * 21 18 16 23 23 C 1.37887 * 119.99690 * 179.97438 * 21 18 16 24 24 N 1.31507 * 120.00093 * 359.97438 * 23 21 18 25 25 Si 1.86800 * 119.99676 * 180.02562 * 23 21 18 26 26 H 1.48508 * 109.47028 * 90.00202 * 25 23 21 27 27 H 1.48493 * 109.46961 * 209.99772 * 25 23 21 28 28 H 1.48498 * 109.47538 * 330.00225 * 25 23 21 29 29 H 1.08990 * 109.47279 * 59.99978 * 1 2 3 30 30 H 1.09006 * 109.46997 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46843 * 299.99471 * 1 2 3 32 32 H 1.08003 * 120.02170 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.97168 * 179.97438 * 5 4 3 34 34 H 1.08003 * 119.94780 * 179.97438 * 6 5 4 35 35 H 1.07994 * 119.97275 * 180.25941 * 7 6 5 36 36 H 1.09004 * 109.47099 * 144.73249 * 9 8 7 37 37 H 1.09002 * 109.47415 * 24.72623 * 9 8 7 38 38 H 1.08999 * 109.47384 * 179.97438 * 12 10 9 39 39 H 1.08996 * 109.47225 * 300.00284 * 12 10 9 40 40 H 1.09007 * 109.46755 * 60.00209 * 12 10 9 41 41 H 1.08999 * 109.46993 * 54.99808 * 13 10 9 42 42 H 1.09002 * 109.46946 * 294.99821 * 13 10 9 43 43 H 1.09004 * 109.47130 * 270.00038 * 17 16 14 44 44 H 1.08997 * 109.47212 * 29.99790 * 17 16 14 45 45 H 1.09003 * 109.46772 * 150.00403 * 17 16 14 46 46 H 1.09001 * 109.47002 * 179.97438 * 20 18 16 47 47 H 1.08993 * 109.46955 * 300.00226 * 20 18 16 48 48 H 1.09000 * 109.47050 * 60.00054 * 20 18 16 49 49 H 0.96999 * 120.00118 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3018 3.6758 0.0005 7 6 4.0560 2.5171 0.0048 8 6 3.4311 1.2849 -0.0009 9 6 4.2538 0.0222 -0.0015 10 6 4.4263 -0.4734 -1.4388 11 1 3.4469 -0.5926 -1.9021 12 6 5.2463 0.5443 -2.2343 13 6 5.1536 -1.8195 -1.4302 14 6 5.2150 -2.3662 -2.8332 15 8 4.7257 -1.7406 -3.7497 16 7 5.8136 -3.5503 -3.0694 17 6 6.4052 -4.3058 -1.9623 18 6 5.8738 -4.0816 -4.4334 19 1 5.3856 -3.3861 -5.1161 20 6 7.3360 -4.2610 -4.8467 21 6 5.1701 -5.4131 -4.4853 22 1 4.7224 -5.8225 -3.5919 23 6 5.0969 -6.1082 -5.6739 24 7 5.6407 -5.6090 -6.7622 25 14 4.2239 -7.7584 -5.7385 26 1 2.7896 -7.5474 -6.0607 27 1 4.8467 -8.6072 -6.7857 28 1 4.3411 -8.4324 -4.4204 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.2127 2.3203 0.0005 33 1 1.3339 4.5114 0.0011 34 1 3.7922 4.6381 0.0005 35 1 5.1343 2.5753 0.0086 36 1 3.7470 -0.7420 0.5878 37 1 5.2327 0.2260 0.4324 38 1 5.3696 0.1911 -3.2580 39 1 4.7282 1.5032 -2.2403 40 1 6.2258 0.6634 -1.7709 41 1 4.6154 -2.5192 -0.7908 42 1 6.1656 -1.6833 -1.0488 43 1 7.4471 -4.0108 -1.8369 44 1 5.8554 -4.0963 -1.0448 45 1 6.3534 -5.3723 -2.1816 46 1 7.3808 -4.6567 -5.8614 47 1 7.8450 -3.2980 -4.8091 48 1 7.8239 -4.9567 -4.1640 49 1 5.5896 -6.0982 -7.5983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107248467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:44 Heat of formation + Delta-G solvation = -62.461336 kcal Electronic energy + Delta-G solvation = -27262.785261 eV Core-core repulsion = 23575.845535 eV Total energy + Delta-G solvation = -3686.939725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.43345 -39.15282 -37.59561 -35.97751 -34.91441 -32.81888 -31.55705 -30.23491 -29.58470 -27.58368 -27.07591 -26.47794 -25.90189 -25.16738 -22.30312 -22.18155 -21.02864 -19.71966 -18.15811 -17.99065 -16.57260 -16.34834 -16.11744 -15.91794 -15.71415 -15.16662 -15.00668 -14.59377 -14.25830 -14.07584 -13.73456 -13.64458 -13.18861 -12.66727 -12.63395 -12.47169 -12.32968 -12.10733 -12.05195 -11.74719 -11.63681 -11.42271 -11.33251 -11.24572 -11.04157 -10.98739 -10.84771 -10.75003 -10.61879 -10.40893 -10.34746 -10.19313 -10.12001 -9.12559 -8.93241 -8.72413 -8.37435 -8.20114 -7.48056 -6.03617 -4.11278 1.21140 1.34191 3.18855 3.28893 3.35211 3.36799 3.54157 3.63708 4.08886 4.43187 4.61663 4.68291 4.87328 4.93318 5.00387 5.11053 5.15667 5.18480 5.27427 5.31320 5.34735 5.41549 5.52466 5.60683 5.71102 5.79101 5.84660 5.91999 5.96988 6.02166 6.10283 6.17076 6.22467 6.35720 6.37422 6.43647 6.46441 6.65113 6.73708 6.79415 6.82936 6.89634 7.12923 7.29914 7.51708 7.60720 7.77488 8.07703 8.25974 8.64051 8.88965 9.19368 9.55361 11.01673 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018713 B = 0.002841 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.940221 B = 9853.390163 C =10568.098962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.130 3.870 4 C -0.209 4.209 5 C -0.089 4.089 6 C -0.158 4.158 7 C -0.078 4.078 8 C -0.102 4.102 9 C -0.069 4.069 10 C -0.065 4.065 11 H 0.079 0.921 12 C -0.152 4.152 13 C -0.135 4.135 14 C 0.503 3.497 15 O -0.551 6.551 16 N -0.596 5.596 17 C 0.085 3.915 18 C 0.257 3.743 19 H 0.062 0.938 20 C -0.145 4.145 21 C -0.524 4.524 22 H 0.059 0.941 23 C 0.064 3.936 24 N -0.888 5.888 25 Si 0.898 3.102 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.275 1.275 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.041 0.959 44 H 0.053 0.947 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.010 0.990 48 H 0.028 0.972 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.642 14.429 17.099 22.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.084 3.916 4 C -0.228 4.228 5 C -0.107 4.107 6 C -0.177 4.177 7 C -0.096 4.096 8 C -0.102 4.102 9 C -0.106 4.106 10 C -0.084 4.084 11 H 0.097 0.903 12 C -0.209 4.209 13 C -0.175 4.175 14 C 0.291 3.709 15 O -0.430 6.430 16 N -0.328 5.328 17 C -0.060 4.060 18 C 0.157 3.843 19 H 0.080 0.920 20 C -0.204 4.204 21 C -0.563 4.563 22 H 0.077 0.923 23 C -0.138 4.138 24 N -0.526 5.526 25 Si 0.725 3.275 26 H -0.206 1.206 27 H -0.212 1.212 28 H -0.199 1.199 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.071 0.929 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.097 0.903 46 H 0.110 0.890 47 H 0.029 0.971 48 H 0.047 0.953 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.777 14.480 16.400 22.393 hybrid contribution -0.730 -0.853 -0.013 1.123 sum -5.507 13.627 16.387 22.012 Atomic orbital electron populations 1.23054 0.78610 1.04064 1.01042 1.86125 1.21087 1.26616 1.88382 1.18893 0.91906 0.84284 0.96480 1.21208 0.99893 0.92473 1.09221 1.20873 0.94715 0.96800 0.98361 1.21023 0.93913 0.98337 1.04382 1.20922 0.99892 0.91022 0.97791 1.19268 0.90465 0.96103 1.04409 1.20556 0.98509 0.93939 0.97598 1.20780 1.00334 0.93291 0.93955 0.90268 1.21979 0.98338 0.98311 1.02233 1.21756 1.02035 0.97700 0.95983 1.20428 0.78595 0.81374 0.90541 1.90602 1.47407 1.58718 1.46256 1.48248 1.54954 1.19124 1.10441 1.21576 0.96642 0.98632 0.89104 1.18893 0.93604 0.94525 0.77269 0.91981 1.22072 0.97100 0.97212 1.04007 1.21343 1.35572 1.03893 0.95512 0.92311 1.24897 0.95431 0.98047 0.95452 1.69882 1.44346 1.38527 0.99893 0.86510 0.79797 0.83440 0.77715 1.20639 1.21155 1.19946 0.92663 0.88156 0.92945 0.85708 0.86152 0.86116 0.85430 0.90735 0.91216 0.90362 0.93204 0.93829 0.89618 0.89826 0.94084 0.92799 0.90307 0.88964 0.97093 0.95258 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -3.87 9.63 -19.41 -0.19 -4.05 16 3 C 0.13 1.61 6.66 -39.21 -0.26 1.35 16 4 C -0.21 -2.21 9.04 -39.43 -0.36 -2.57 16 5 C -0.09 -0.86 10.04 -39.61 -0.40 -1.26 16 6 C -0.16 -1.54 10.04 -39.56 -0.40 -1.94 16 7 C -0.08 -0.83 8.37 -39.60 -0.33 -1.16 16 8 C -0.10 -1.24 4.57 -104.47 -0.48 -1.72 16 9 C -0.07 -0.82 4.55 -27.88 -0.13 -0.95 16 10 C -0.06 -0.96 2.03 -90.61 -0.18 -1.14 16 11 H 0.08 1.40 7.96 -51.93 -0.41 0.98 16 12 C -0.15 -2.27 8.58 37.16 0.32 -1.95 16 13 C -0.13 -2.05 3.73 -27.88 -0.10 -2.16 16 14 C 0.50 10.55 7.39 -10.99 -0.08 10.46 16 15 O -0.55 -13.62 13.29 5.56 0.07 -13.55 16 16 N -0.60 -12.98 2.75 -175.26 -0.48 -13.46 16 17 C 0.08 1.45 9.24 59.85 0.55 2.00 16 18 C 0.26 6.71 2.64 -69.08 -0.18 6.53 16 19 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 20 C -0.15 -3.56 8.97 37.16 0.33 -3.23 16 21 C -0.52 -14.41 7.99 -34.44 -0.28 -14.68 16 22 H 0.06 1.59 7.34 -52.49 -0.39 1.20 16 23 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 24 N -0.89 -25.52 11.32 55.43 0.63 -24.89 16 25 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 32 H 0.13 1.06 6.30 -52.48 -0.33 0.73 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 35 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.07 0.89 7.69 -51.93 -0.40 0.49 16 37 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 38 H 0.08 1.44 5.95 -51.93 -0.31 1.13 16 39 H 0.05 0.70 6.53 -51.93 -0.34 0.36 16 40 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.09 1.19 7.40 -51.93 -0.38 0.80 16 42 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.75 6.44 -51.93 -0.33 0.42 16 45 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 46 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 47 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 48 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 49 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 386.60 15.07 5.83 5.83 Total: -1.00 -32.53 386.60 -8.30 -40.83 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -8.06 Total: 2.55 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -1.07 Total: -9.51 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.15 Total: -38.35 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.11 Total: -17.60 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.53 -8.30 -40.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107248467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.635 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds