Wall clock time and date at job start Tue Mar 31 2020 12:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46702 * 2 1 4 4 C 1.52998 * 109.47137 * 119.99631 * 2 1 3 5 5 C 1.53002 * 109.46956 * 174.11517 * 4 2 1 6 6 H 1.08997 * 109.46986 * 54.54985 * 5 4 2 7 7 C 1.53006 * 109.47245 * 174.54854 * 5 4 2 8 8 C 1.53000 * 109.47132 * 294.54785 * 5 4 2 9 9 C 1.50702 * 109.47086 * 174.99862 * 8 5 4 10 10 O 1.21281 * 120.00076 * 0.02562 * 9 8 5 11 11 N 1.34774 * 120.00240 * 180.02562 * 9 8 5 12 12 C 1.46497 * 120.00350 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47226 * 180.02562 * 12 11 9 14 14 C 1.38326 * 119.96068 * 270.01622 * 13 12 11 15 15 C 1.38275 * 120.13637 * 180.02562 * 14 13 12 16 16 C 1.38126 * 120.07299 * 359.67602 * 15 14 13 17 17 C 1.38859 * 119.92373 * 0.59979 * 16 15 14 18 18 O 1.35752 * 120.06711 * 179.69730 * 17 16 15 19 19 C 1.34827 * 117.00121 * 354.15973 * 18 17 16 20 20 H 1.08005 * 119.99673 * 5.03065 * 19 18 17 21 21 C 1.38652 * 120.00188 * 185.03294 * 19 18 17 22 22 N 1.31551 * 120.00019 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00042 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47337 * 89.99755 * 23 21 19 25 25 H 1.48500 * 109.47172 * 210.00043 * 23 21 19 26 26 H 1.48501 * 109.47129 * 329.99848 * 23 21 19 27 27 C 1.38078 * 119.97131 * 89.99713 * 13 12 11 28 28 H 1.08997 * 109.47258 * 300.00002 * 1 2 3 29 29 H 1.09001 * 109.47515 * 60.00736 * 1 2 3 30 30 H 1.09001 * 109.46933 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47258 * 239.99998 * 2 1 3 32 32 H 1.08993 * 109.47639 * 65.57247 * 3 2 1 33 33 H 1.09002 * 109.46755 * 185.57457 * 3 2 1 34 34 H 1.09000 * 109.46965 * 305.56991 * 3 2 1 35 35 H 1.09000 * 109.46899 * 54.11996 * 4 2 1 36 36 H 1.08999 * 109.47113 * 294.11416 * 4 2 1 37 37 H 1.08999 * 109.46584 * 65.57940 * 7 5 4 38 38 H 1.08998 * 109.46742 * 185.58352 * 7 5 4 39 39 H 1.08996 * 109.46839 * 305.57870 * 7 5 4 40 40 H 1.09003 * 109.46907 * 55.00211 * 8 5 4 41 41 H 1.08999 * 109.47403 * 294.99916 * 8 5 4 42 42 H 0.97000 * 119.99940 * 359.97438 * 11 9 8 43 43 H 1.09004 * 109.47427 * 59.98976 * 12 11 9 44 44 H 1.09004 * 109.47029 * 299.99903 * 12 11 9 45 45 H 1.08005 * 119.93028 * 359.97438 * 14 13 12 46 46 H 1.08003 * 119.96338 * 179.97438 * 15 14 13 47 47 H 1.07993 * 120.03854 * 180.32304 * 16 15 14 48 48 H 0.96996 * 120.00473 * 180.02562 * 22 21 19 49 49 H 1.07997 * 120.03186 * 0.04237 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5628 -0.8505 1.1775 6 1 4.0044 0.1345 1.0259 7 6 4.0862 -1.4482 2.4851 8 6 3.9426 -1.7647 0.0109 9 6 5.4421 -1.7946 -0.1364 10 8 6.1385 -1.1487 0.6178 11 7 6.0093 -2.5390 -1.1061 12 6 7.4670 -2.5685 -1.2489 13 6 7.8410 -3.4679 -2.3988 14 6 8.0666 -4.8146 -2.1775 15 6 8.4105 -5.6430 -3.2299 16 6 8.5232 -5.1291 -4.5070 17 6 8.3031 -3.7766 -4.7314 18 8 8.4192 -3.2673 -5.9844 19 6 8.8680 -4.1005 -6.9447 20 1 9.0394 -5.1426 -6.7185 21 6 9.1098 -3.6195 -8.2224 22 7 8.9016 -2.3501 -8.4977 23 14 9.7324 -4.7738 -9.5526 24 1 8.5775 -5.3756 -10.2662 25 1 10.5681 -4.0135 -10.5164 26 1 10.5466 -5.8500 -8.9328 27 6 7.9578 -2.9470 -3.6722 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.7603 1.9268 0.9356 33 1 3.1253 1.4442 -0.0998 34 1 1.5973 1.9843 -0.8359 35 1 1.5932 -1.7139 1.3035 36 1 1.7653 -0.1500 2.1361 37 1 3.7234 -2.4709 2.5879 38 1 5.1761 -1.4486 2.4738 39 1 3.7318 -0.8508 3.3251 40 1 3.4948 -1.3862 -0.9080 41 1 3.5765 -2.7728 0.2052 42 1 5.4524 -3.0560 -1.7091 43 1 7.9146 -2.9475 -0.3301 44 1 7.8336 -1.5604 -1.4425 45 1 7.9747 -5.2196 -1.1805 46 1 8.5863 -6.6940 -3.0538 47 1 8.7867 -5.7776 -5.3294 48 1 9.0704 -2.0137 -9.3917 49 1 7.7820 -1.8954 -3.8443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113107950.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:36 Heat of formation + Delta-G solvation = -75.767484 kcal Electronic energy + Delta-G solvation = -25984.595191 eV Core-core repulsion = 22297.078468 eV Total energy + Delta-G solvation = -3687.516723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.00069 -39.10747 -37.67711 -36.77012 -34.54099 -33.64105 -32.35785 -30.97397 -29.26083 -28.24508 -27.41868 -26.75837 -25.74102 -24.93982 -21.75636 -21.37704 -20.82375 -20.56672 -19.48703 -17.94370 -17.30701 -16.80964 -16.01328 -15.62861 -15.24694 -15.13746 -14.83190 -14.50407 -14.42523 -14.21465 -13.93545 -13.63594 -13.55601 -13.11513 -13.04274 -12.74529 -12.48768 -12.43603 -12.37971 -12.16865 -11.95105 -11.72638 -11.58901 -11.49962 -11.40536 -11.24638 -10.95215 -10.84926 -10.74134 -10.72274 -10.52888 -10.50617 -10.48246 -9.69670 -9.43045 -8.94699 -8.90716 -8.25755 -7.35147 -6.51028 -4.10656 1.88993 2.24754 2.71690 3.08130 3.09829 3.14619 3.41863 3.90892 4.43754 4.47197 4.57852 4.63776 4.76767 4.88446 4.98268 5.02861 5.05403 5.21705 5.27377 5.35738 5.38238 5.41354 5.46340 5.52691 5.55020 5.63949 5.65866 5.73085 5.75143 5.77995 5.82579 5.87421 5.92936 5.96212 6.04364 6.05937 6.17459 6.23196 6.29279 6.31690 6.53258 6.54787 6.79578 6.97450 7.16794 7.25129 7.33508 7.60143 7.69887 7.93061 8.31004 8.94309 9.62785 10.66738 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.002274 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.999728 B =12309.803304 C =13431.108171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C -0.150 4.150 4 C -0.110 4.110 5 C -0.076 4.076 6 H 0.081 0.919 7 C -0.153 4.153 8 C -0.140 4.140 9 C 0.510 3.490 10 O -0.544 6.544 11 N -0.723 5.723 12 C 0.167 3.833 13 C -0.072 4.072 14 C -0.196 4.196 15 C -0.076 4.076 16 C -0.226 4.226 17 C 0.150 3.850 18 O -0.176 6.176 19 C -0.393 4.393 20 H 0.092 0.908 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.171 4.171 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.403 0.597 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.128 0.872 48 H 0.271 0.729 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.907 0.236 16.341 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.207 4.207 4 C -0.147 4.147 5 C -0.095 4.095 6 H 0.099 0.901 7 C -0.210 4.210 8 C -0.180 4.180 9 C 0.297 3.703 10 O -0.422 6.422 11 N -0.374 5.374 12 C 0.045 3.955 13 C -0.073 4.073 14 C -0.215 4.215 15 C -0.094 4.094 16 C -0.246 4.246 17 C 0.097 3.903 18 O -0.079 6.079 19 C -0.470 4.470 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.496 5.496 23 Si 0.766 3.234 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.191 4.191 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.237 0.763 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.145 0.855 48 H 0.081 0.919 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.411 1.099 16.578 20.738 hybrid contribution 0.104 -1.001 -1.136 1.517 sum -12.307 0.098 15.442 19.746 Atomic orbital electron populations 1.21844 0.95420 1.01575 1.01622 1.21214 0.95509 0.96622 0.98745 1.21894 1.01448 0.95839 1.01539 1.21740 0.94840 1.00420 0.97734 1.20935 0.94900 0.99596 0.94092 0.90062 1.21949 1.03176 0.99733 0.96118 1.21850 0.92435 1.02409 1.01295 1.20726 0.90761 0.78766 0.80056 1.90652 1.64713 1.43317 1.43481 1.46197 1.08007 1.48977 1.34242 1.20133 0.79999 0.99108 0.96294 1.19279 1.01177 0.93880 0.92973 1.20476 1.09595 0.93131 0.98320 1.20747 0.97687 0.98511 0.92483 1.21241 1.09962 0.95678 0.97679 1.19326 0.93006 0.91610 0.86403 1.83981 1.72504 1.38979 1.12479 1.21324 1.44930 0.92162 0.88541 0.89036 1.25297 0.96814 0.96775 0.97579 1.70030 1.44760 1.13141 1.21626 0.85708 0.78878 0.79108 0.79724 1.19841 1.20201 1.19173 1.20083 1.09182 0.99373 0.90482 0.92880 0.92783 0.92795 0.90922 0.92833 0.92267 0.92874 0.91967 0.91728 0.93498 0.90608 0.93160 0.88734 0.89067 0.76311 0.91074 0.90970 0.87545 0.87293 0.85466 0.91929 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.19 37.16 0.34 -0.64 16 2 C -0.10 -0.76 2.80 -90.62 -0.25 -1.01 16 3 C -0.15 -1.18 8.83 37.16 0.33 -0.85 16 4 C -0.11 -0.82 4.14 -26.73 -0.11 -0.93 16 5 C -0.08 -0.70 1.92 -90.62 -0.17 -0.88 16 6 H 0.08 0.88 6.29 -51.93 -0.33 0.55 16 7 C -0.15 -1.49 8.87 37.16 0.33 -1.16 16 8 C -0.14 -1.29 5.05 -27.88 -0.14 -1.43 16 9 C 0.51 6.49 7.57 -10.99 -0.08 6.40 16 10 O -0.54 -8.67 13.97 5.56 0.08 -8.59 16 11 N -0.72 -9.14 5.55 -61.47 -0.34 -9.48 16 12 C 0.17 2.44 5.80 -5.20 -0.03 2.41 16 13 C -0.07 -1.21 5.25 -104.65 -0.55 -1.76 16 14 C -0.20 -3.17 9.70 -39.54 -0.38 -3.55 16 15 C -0.08 -1.32 10.04 -39.61 -0.40 -1.71 16 16 C -0.23 -4.69 9.17 -39.39 -0.36 -5.05 16 17 C 0.15 3.49 6.65 -39.11 -0.26 3.23 16 18 O -0.18 -4.89 9.76 0.05 0.00 -4.88 16 19 C -0.39 -10.72 9.49 30.89 0.29 -10.43 16 20 H 0.09 2.30 5.21 -52.48 -0.27 2.02 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -24.84 13.67 55.48 0.76 -24.08 16 23 Si 0.94 20.08 29.55 -169.99 -5.02 15.06 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 25 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 26 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 27 C -0.17 -3.44 9.65 -39.40 -0.38 -3.82 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.56 6.23 -51.93 -0.32 0.23 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.52 6.75 -51.93 -0.35 0.17 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.93 6.07 -51.93 -0.32 0.61 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.78 6.25 -51.93 -0.32 0.45 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.40 4.52 8.46 -40.82 -0.35 4.17 16 43 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 44 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 45 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 46 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 47 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 48 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 394.40 15.07 5.94 5.94 Total: -1.00 -30.60 394.40 -8.54 -39.14 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -8.03 Total: 7.10 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -1.93 Total: -20.20 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.42 Total: -33.56 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.08 Total: -13.47 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.60 -8.54 -39.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113107950.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.629 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds