Wall clock time and date at job start Tue Mar 31 2020 12:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46702 * 2 1 4 4 C 1.52998 * 109.47137 * 119.99631 * 2 1 3 5 5 C 1.53002 * 109.46956 * 174.11517 * 4 2 1 6 6 H 1.08997 * 109.46986 * 54.54985 * 5 4 2 7 7 C 1.53006 * 109.47245 * 174.54854 * 5 4 2 8 8 C 1.53000 * 109.47132 * 294.54785 * 5 4 2 9 9 C 1.50702 * 109.47086 * 174.99862 * 8 5 4 10 10 O 1.21281 * 120.00076 * 0.02562 * 9 8 5 11 11 N 1.34774 * 120.00240 * 180.02562 * 9 8 5 12 12 C 1.46497 * 120.00350 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47226 * 180.02562 * 12 11 9 14 14 C 1.38326 * 119.96068 * 270.01622 * 13 12 11 15 15 C 1.38275 * 120.13637 * 180.02562 * 14 13 12 16 16 C 1.38126 * 120.07299 * 359.67602 * 15 14 13 17 17 C 1.38859 * 119.92373 * 0.59979 * 16 15 14 18 18 O 1.35752 * 120.06711 * 179.69730 * 17 16 15 19 19 C 1.34827 * 117.00121 * 354.15973 * 18 17 16 20 20 H 1.08005 * 119.99673 * 5.03065 * 19 18 17 21 21 C 1.38652 * 120.00188 * 185.03294 * 19 18 17 22 22 N 1.31551 * 120.00019 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00042 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47337 * 89.99755 * 23 21 19 25 25 H 1.48500 * 109.47172 * 210.00043 * 23 21 19 26 26 H 1.48501 * 109.47129 * 329.99848 * 23 21 19 27 27 C 1.38078 * 119.97131 * 89.99713 * 13 12 11 28 28 H 1.08997 * 109.47258 * 300.00002 * 1 2 3 29 29 H 1.09001 * 109.47515 * 60.00736 * 1 2 3 30 30 H 1.09001 * 109.46933 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47258 * 239.99998 * 2 1 3 32 32 H 1.08993 * 109.47639 * 65.57247 * 3 2 1 33 33 H 1.09002 * 109.46755 * 185.57457 * 3 2 1 34 34 H 1.09000 * 109.46965 * 305.56991 * 3 2 1 35 35 H 1.09000 * 109.46899 * 54.11996 * 4 2 1 36 36 H 1.08999 * 109.47113 * 294.11416 * 4 2 1 37 37 H 1.08999 * 109.46584 * 65.57940 * 7 5 4 38 38 H 1.08998 * 109.46742 * 185.58352 * 7 5 4 39 39 H 1.08996 * 109.46839 * 305.57870 * 7 5 4 40 40 H 1.09003 * 109.46907 * 55.00211 * 8 5 4 41 41 H 1.08999 * 109.47403 * 294.99916 * 8 5 4 42 42 H 0.97000 * 119.99940 * 359.97438 * 11 9 8 43 43 H 1.09004 * 109.47427 * 59.98976 * 12 11 9 44 44 H 1.09004 * 109.47029 * 299.99903 * 12 11 9 45 45 H 1.08005 * 119.93028 * 359.97438 * 14 13 12 46 46 H 1.08003 * 119.96338 * 179.97438 * 15 14 13 47 47 H 1.07993 * 120.03854 * 180.32304 * 16 15 14 48 48 H 0.96996 * 120.00473 * 180.02562 * 22 21 19 49 49 H 1.07997 * 120.03186 * 0.04237 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5628 -0.8505 1.1775 6 1 4.0044 0.1345 1.0259 7 6 4.0862 -1.4482 2.4851 8 6 3.9426 -1.7647 0.0109 9 6 5.4421 -1.7946 -0.1364 10 8 6.1385 -1.1487 0.6178 11 7 6.0093 -2.5390 -1.1061 12 6 7.4670 -2.5685 -1.2489 13 6 7.8410 -3.4679 -2.3988 14 6 8.0666 -4.8146 -2.1775 15 6 8.4105 -5.6430 -3.2299 16 6 8.5232 -5.1291 -4.5070 17 6 8.3031 -3.7766 -4.7314 18 8 8.4192 -3.2673 -5.9844 19 6 8.8680 -4.1005 -6.9447 20 1 9.0394 -5.1426 -6.7185 21 6 9.1098 -3.6195 -8.2224 22 7 8.9016 -2.3501 -8.4977 23 14 9.7324 -4.7738 -9.5526 24 1 8.5775 -5.3756 -10.2662 25 1 10.5681 -4.0135 -10.5164 26 1 10.5466 -5.8500 -8.9328 27 6 7.9578 -2.9470 -3.6722 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.7603 1.9268 0.9356 33 1 3.1253 1.4442 -0.0998 34 1 1.5973 1.9843 -0.8359 35 1 1.5932 -1.7139 1.3035 36 1 1.7653 -0.1500 2.1361 37 1 3.7234 -2.4709 2.5879 38 1 5.1761 -1.4486 2.4738 39 1 3.7318 -0.8508 3.3251 40 1 3.4948 -1.3862 -0.9080 41 1 3.5765 -2.7728 0.2052 42 1 5.4524 -3.0560 -1.7091 43 1 7.9146 -2.9475 -0.3301 44 1 7.8336 -1.5604 -1.4425 45 1 7.9747 -5.2196 -1.1805 46 1 8.5863 -6.6940 -3.0538 47 1 8.7867 -5.7776 -5.3294 48 1 9.0704 -2.0137 -9.3917 49 1 7.7820 -1.8954 -3.8443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113107950.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:35 Heat of formation + Delta-G solvation = -93.036528 kcal Electronic energy + Delta-G solvation = -25985.344033 eV Core-core repulsion = 22297.078468 eV Total energy + Delta-G solvation = -3688.265565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.13333 -40.64077 -38.67979 -38.14648 -35.75709 -34.37615 -34.29266 -32.33908 -30.83431 -29.24141 -27.99614 -27.49627 -27.38998 -26.38985 -23.28071 -22.56258 -22.04940 -21.42278 -20.25096 -19.58246 -18.90635 -18.03151 -17.05605 -16.87340 -16.59082 -16.30232 -16.11401 -15.92772 -15.50896 -15.39946 -15.14726 -14.83971 -14.72025 -14.35444 -13.96963 -13.89805 -13.77969 -13.62975 -13.41659 -13.08334 -13.03327 -12.95060 -12.65133 -12.53803 -12.38532 -12.33582 -12.27237 -12.18107 -12.12035 -11.90320 -11.39185 -11.23869 -11.20912 -11.15865 -10.83325 -10.71338 -10.05826 -9.75160 -9.04148 -8.47615 -6.16248 0.38406 0.69705 1.35524 1.44345 1.52861 1.70832 2.17001 2.32429 2.85958 3.15463 3.39929 3.73993 3.81241 3.89987 3.91956 4.08324 4.14560 4.22910 4.29616 4.35326 4.41720 4.52130 4.52264 4.67928 4.71034 4.72038 4.74520 4.78170 4.83992 4.91333 5.00656 5.01948 5.04197 5.11214 5.13864 5.16539 5.22617 5.24861 5.31646 5.38742 5.44940 5.56528 5.59884 5.61607 5.62477 5.69863 5.71177 6.01032 6.15919 6.59987 6.97220 7.30038 7.77390 8.75545 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.002274 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.999728 B =12309.803304 C =13431.108171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.103 4.103 3 C -0.150 4.150 4 C -0.101 4.101 5 C -0.075 4.075 6 H 0.060 0.940 7 C -0.149 4.149 8 C -0.134 4.134 9 C 0.508 3.492 10 O -0.578 6.578 11 N -0.719 5.719 12 C 0.174 3.826 13 C -0.058 4.058 14 C -0.169 4.169 15 C -0.069 4.069 16 C -0.235 4.235 17 C 0.112 3.888 18 O -0.232 6.232 19 C -0.412 4.412 20 H 0.104 0.896 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.018 2.982 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.252 1.252 27 C -0.182 4.182 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.412 0.588 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.121 0.879 48 H 0.272 0.728 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.098 -2.457 18.411 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.208 4.208 4 C -0.139 4.139 5 C -0.093 4.093 6 H 0.078 0.922 7 C -0.207 4.207 8 C -0.173 4.173 9 C 0.297 3.703 10 O -0.458 6.458 11 N -0.371 5.371 12 C 0.050 3.950 13 C -0.058 4.058 14 C -0.188 4.188 15 C -0.087 4.087 16 C -0.254 4.254 17 C 0.062 3.938 18 O -0.139 6.139 19 C -0.488 4.488 20 H 0.121 0.879 21 C -0.221 4.221 22 N -0.560 5.560 23 Si 0.837 3.163 24 H -0.187 1.187 25 H -0.198 1.198 26 H -0.176 1.176 27 C -0.202 4.202 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.125 0.875 41 H 0.134 0.866 42 H 0.247 0.753 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.166 0.834 46 H 0.167 0.833 47 H 0.139 0.861 48 H 0.081 0.919 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.627 -1.627 18.701 23.196 hybrid contribution 0.417 -0.180 -1.400 1.472 sum -13.210 -1.807 17.301 21.842 Atomic orbital electron populations 1.21823 0.94615 1.02085 1.01752 1.21220 0.96150 0.96036 0.98713 1.21896 1.00542 0.96581 1.01754 1.21668 0.93224 1.01205 0.97794 1.20898 0.96111 0.98465 0.93869 0.92177 1.21897 1.01324 1.00745 0.96690 1.21898 0.89581 1.03927 1.01903 1.21351 0.92120 0.77708 0.79139 1.90650 1.65811 1.44604 1.44750 1.46119 1.07174 1.49240 1.34526 1.19988 0.81427 0.97956 0.95611 1.19461 0.99594 0.94782 0.91989 1.20990 1.05684 0.92259 0.99858 1.21167 0.95999 1.00647 0.90880 1.21374 1.10158 0.94538 0.99352 1.19858 0.94720 0.93366 0.85843 1.83947 1.75343 1.40360 1.14241 1.21826 1.45040 0.92843 0.89140 0.87887 1.26588 0.96912 0.98598 0.99987 1.70181 1.47776 1.15621 1.22382 0.84591 0.78579 0.76931 0.76163 1.18711 1.19836 1.17566 1.20210 1.09737 0.98868 0.91412 0.92565 0.92908 0.92078 0.91045 0.92501 0.93643 0.92836 0.90614 0.91449 0.92167 0.93360 0.92512 0.87509 0.86558 0.75260 0.89760 0.92326 0.83449 0.83316 0.86145 0.91869 0.87612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.19 71.98 0.66 -0.98 16 2 C -0.10 -1.34 2.80 -10.79 -0.03 -1.37 16 3 C -0.15 -2.27 8.83 71.98 0.64 -1.63 16 4 C -0.10 -1.27 4.14 30.59 0.13 -1.15 16 5 C -0.07 -1.26 1.92 -10.79 -0.02 -1.28 16 6 H 0.06 1.28 6.29 -2.39 -0.02 1.27 16 7 C -0.15 -2.68 8.87 71.98 0.64 -2.04 16 8 C -0.13 -2.16 5.05 29.85 0.15 -2.01 16 9 C 0.51 12.15 7.57 87.66 0.66 12.82 16 10 O -0.58 -18.13 13.97 -3.03 -0.04 -18.17 16 11 N -0.72 -16.73 5.55 -466.79 -2.59 -19.32 16 12 C 0.17 4.73 5.80 85.63 0.50 5.23 16 13 C -0.06 -1.82 5.25 -19.88 -0.10 -1.92 16 14 C -0.17 -4.74 9.70 22.30 0.22 -4.53 16 15 C -0.07 -2.14 10.04 22.25 0.22 -1.92 16 16 C -0.23 -9.60 9.17 22.39 0.21 -9.39 16 17 C 0.11 5.38 6.65 22.58 0.15 5.53 16 18 O -0.23 -13.68 9.76 -22.73 -0.22 -13.91 16 19 C -0.41 -23.50 9.49 67.92 0.64 -22.85 16 20 H 0.10 5.33 5.21 -2.91 -0.02 5.32 16 21 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 22 N -0.92 -56.15 13.67 21.61 0.30 -55.85 16 23 Si 1.02 42.08 29.55 68.60 2.03 44.11 16 24 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 27 C -0.18 -7.46 9.65 22.39 0.22 -7.24 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.95 6.23 -2.39 -0.01 0.94 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.04 0.80 6.75 -2.39 -0.02 0.78 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 1.15 6.07 -2.39 -0.01 1.13 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.11 1.51 6.25 -2.39 -0.01 1.49 16 41 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.41 8.20 8.46 -92.71 -0.78 7.42 16 43 H 0.08 2.14 8.09 -2.38 -0.02 2.12 16 44 H 0.06 1.78 8.08 -2.38 -0.02 1.76 16 45 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 46 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 47 H 0.12 5.02 5.64 -2.91 -0.02 5.00 16 48 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 49 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -71.76 394.40 4.96 -66.79 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.16 Total: 31.92 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 5.34 Total: -35.58 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -2.29 Total: -75.17 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.26 Total: -32.08 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -71.76 4.96 -66.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113107950.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.242 kcal (2) G-P(sol) polarization free energy of solvation -71.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds