Wall clock time and date at job start Tue Mar 31 2020 12:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 120.00055 * 2 1 4 4 C 1.52996 * 109.47341 * 124.99301 * 3 2 1 5 5 H 1.09003 * 109.47580 * 305.00166 * 4 3 2 6 6 C 1.53002 * 109.47194 * 185.00219 * 4 3 2 7 7 N 1.46905 * 109.46819 * 65.00385 * 4 3 2 8 8 C 1.46901 * 110.99870 * 205.00022 * 7 4 3 9 9 C 1.50697 * 109.46943 * 180.02562 * 8 7 4 10 10 C 1.38253 * 119.93174 * 89.99685 * 9 8 7 11 11 C 1.38240 * 120.14906 * 179.97438 * 10 9 8 12 12 C 1.38569 * 119.99661 * 0.02562 * 11 10 9 13 13 O 1.35993 * 120.06642 * 179.97438 * 12 11 10 14 14 C 1.42897 * 117.00484 * 0.02562 * 13 12 11 15 15 C 1.39152 * 119.85624 * 359.97438 * 12 11 10 16 16 O 1.35994 * 120.07215 * 179.97438 * 15 12 11 17 17 C 1.42892 * 116.99949 * 180.02562 * 16 15 12 18 18 C 1.53002 * 109.47102 * 180.02562 * 17 16 15 19 19 C 1.50710 * 109.47121 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99412 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99953 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99756 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00146 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46670 * 59.99492 * 23 21 19 25 25 H 1.48493 * 109.47350 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47078 * 300.00032 * 23 21 19 27 27 C 1.38244 * 119.92146 * 269.71945 * 9 8 7 28 28 H 1.08001 * 119.99817 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.00272 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00272 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.46614 * 4.99453 * 3 2 1 32 32 H 1.08991 * 109.47169 * 244.99869 * 3 2 1 33 33 H 1.08996 * 109.46950 * 180.02562 * 6 4 3 34 34 H 1.09003 * 109.46813 * 300.00416 * 6 4 3 35 35 H 1.08999 * 109.47105 * 60.00531 * 6 4 3 36 36 H 1.00901 * 110.99869 * 81.04733 * 7 4 3 37 37 H 1.09004 * 109.47031 * 299.99620 * 8 7 4 38 38 H 1.08995 * 109.47111 * 59.99900 * 8 7 4 39 39 H 1.08001 * 119.92140 * 359.97438 * 10 9 8 40 40 H 1.07999 * 120.00120 * 180.02562 * 11 10 9 41 41 H 1.09000 * 109.46952 * 179.97438 * 14 13 12 42 42 H 1.08998 * 109.46905 * 300.00414 * 14 13 12 43 43 H 1.08998 * 109.46719 * 60.00194 * 14 13 12 44 44 H 1.09005 * 109.47435 * 300.00275 * 17 16 15 45 45 H 1.09002 * 109.47141 * 60.00303 * 17 16 15 46 46 H 1.09002 * 109.47381 * 299.99658 * 18 17 16 47 47 H 1.08994 * 109.47240 * 60.00684 * 18 17 16 48 48 H 0.97001 * 119.99467 * 180.02562 * 22 21 19 49 49 H 1.07999 * 120.00338 * 0.02801 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3332 1.1817 5 1 2.4882 1.1471 2.1061 6 6 3.7090 2.7048 1.2553 7 7 4.0574 0.2942 0.9998 8 6 4.6206 -0.1220 2.2911 9 6 5.6638 -1.1857 2.0648 10 6 6.9839 -0.8261 1.8664 11 6 7.9446 -1.7982 1.6588 12 6 7.5852 -3.1365 1.6488 13 8 8.5290 -4.0939 1.4442 14 6 9.8725 -3.6490 1.2470 15 6 6.2565 -3.4984 1.8485 16 8 5.8988 -4.8104 1.8390 17 6 4.5171 -5.1077 2.0501 18 6 4.3090 -6.6228 2.0062 19 6 2.8516 -6.9363 2.2283 20 1 2.1449 -6.1350 2.3855 21 6 2.4210 -8.2461 2.2318 22 7 3.2819 -9.2218 2.0409 23 14 0.6149 -8.6347 2.5078 24 1 -0.1978 -7.9926 1.4436 25 1 0.4128 -10.1052 2.4651 26 1 0.1937 -8.1150 3.8336 27 6 5.2994 -2.5192 2.0617 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6213 1.4026 -0.9313 33 1 4.4014 2.7246 2.0969 34 1 4.2558 2.8909 0.3308 35 1 2.9504 3.4757 1.3903 36 1 4.7833 0.6071 0.3727 37 1 5.0786 0.7371 2.7815 38 1 3.8263 -0.5200 2.9226 39 1 7.2652 0.2166 1.8736 40 1 8.9752 -1.5147 1.5045 41 1 10.5223 -4.5110 1.0961 42 1 9.9162 -3.0026 0.3704 43 1 10.2039 -3.0939 2.1246 44 1 4.2082 -4.7269 3.0237 45 1 3.9205 -4.6358 1.2694 46 1 4.6179 -7.0040 1.0329 47 1 4.9054 -7.0943 2.7872 48 1 2.9788 -10.1433 2.0430 49 1 4.2682 -2.7977 2.2209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116927591.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:41 Heat of formation + Delta-G solvation = -65.278634 kcal Electronic energy + Delta-G solvation = -26402.178050 eV Core-core repulsion = 22715.116157 eV Total energy + Delta-G solvation = -3687.061893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51453 -39.46528 -39.07814 -37.74440 -35.50530 -34.95832 -32.78172 -32.26966 -30.92861 -30.03457 -28.14972 -27.44951 -27.03758 -25.46432 -23.95894 -22.48039 -22.02122 -21.83047 -20.52557 -19.49602 -18.62862 -17.74998 -17.57463 -17.15644 -16.78109 -16.54227 -16.33645 -16.17577 -15.70291 -15.59924 -15.10676 -15.04166 -14.47872 -14.34333 -14.29607 -14.16657 -13.98862 -13.53122 -13.33811 -13.10376 -13.00397 -12.91894 -12.67687 -12.62585 -12.54056 -12.33705 -12.06592 -11.95992 -11.89050 -11.75702 -11.63511 -11.59364 -11.56514 -11.41445 -10.61997 -10.15259 -9.64206 -9.23210 -8.70128 -8.26632 -6.40958 0.32853 0.45955 1.39710 1.44470 1.50808 1.52425 2.27601 2.43668 2.51944 2.68976 3.07231 3.41445 3.79653 3.88376 3.97832 4.07887 4.14799 4.22711 4.25438 4.26682 4.30288 4.42222 4.42925 4.45729 4.51598 4.57093 4.61546 4.68057 4.73805 4.76228 4.79359 4.83660 4.96039 5.07262 5.15928 5.20186 5.23512 5.28828 5.31634 5.34662 5.45564 5.61434 5.68141 5.81539 5.89235 5.96589 6.05434 6.19100 6.25886 6.57133 6.71800 6.74792 7.29056 8.86618 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.007194 B = 0.003886 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3891.109500 B = 7203.259108 C =10752.562968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.143 4.143 3 C -0.077 4.077 4 C 0.089 3.911 5 H 0.071 0.929 6 C -0.176 4.176 7 N -0.688 5.688 8 C 0.112 3.888 9 C -0.080 4.080 10 C -0.107 4.107 11 C -0.165 4.165 12 C 0.073 3.927 13 O -0.343 6.343 14 C 0.019 3.981 15 C 0.067 3.933 16 O -0.337 6.337 17 C 0.088 3.912 18 C 0.032 3.968 19 C -0.547 4.547 20 H 0.070 0.930 21 C 0.002 3.998 22 N -0.932 5.932 23 Si 0.977 3.023 24 H -0.264 1.264 25 H -0.280 1.280 26 H -0.263 1.263 27 C -0.162 4.162 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.347 0.653 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.160 0.840 40 H 0.164 0.836 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.055 0.945 46 H -0.005 1.005 47 H -0.004 1.004 48 H 0.267 0.733 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.063 27.963 -1.791 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.161 4.161 3 C -0.115 4.115 4 C -0.021 4.021 5 H 0.089 0.911 6 C -0.234 4.234 7 N -0.320 5.320 8 C -0.016 4.016 9 C -0.081 4.081 10 C -0.125 4.125 11 C -0.183 4.183 12 C 0.028 3.972 13 O -0.258 6.258 14 C -0.075 4.075 15 C 0.022 3.978 16 O -0.252 6.252 17 C 0.013 3.987 18 C -0.006 4.006 19 C -0.585 4.585 20 H 0.088 0.912 21 C -0.197 4.197 22 N -0.571 5.571 23 Si 0.800 3.200 24 H -0.188 1.188 25 H -0.206 1.206 26 H -0.187 1.187 27 C -0.181 4.181 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.166 0.834 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.177 0.823 40 H 0.182 0.818 41 H 0.127 0.873 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.013 0.987 47 H 0.015 0.985 48 H 0.076 0.924 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.718 26.885 -1.856 27.549 hybrid contribution -0.194 -0.283 0.285 0.446 sum 5.524 26.602 -1.571 27.215 Atomic orbital electron populations 1.23938 0.96103 1.01972 1.03075 1.22996 0.95713 0.99336 0.98095 1.20766 0.97472 0.94596 0.98639 1.21534 0.92630 0.89583 0.98328 0.91103 1.22439 1.01433 0.97170 1.02406 1.60512 1.17410 1.41947 1.12137 1.20742 0.94597 0.94745 0.91551 1.19646 0.95198 0.92594 1.00635 1.21035 0.91114 1.00266 1.00089 1.21309 1.02266 0.89253 1.05488 1.18654 0.86512 0.89346 1.02695 1.86187 1.18638 1.33895 1.87070 1.23341 0.79193 1.03005 1.02006 1.18926 0.92396 0.84101 1.02397 1.86167 1.29357 1.22408 1.87281 1.22801 0.78234 0.98096 0.99558 1.18925 0.96575 0.89286 0.95770 1.21358 0.93251 0.93210 1.50656 0.91194 1.26063 1.03469 0.95880 0.94240 1.70130 1.36917 1.00138 1.49886 0.85327 0.78037 0.77201 0.79450 1.18839 1.20561 1.18717 1.21050 0.98385 0.93108 1.05552 0.89470 0.87413 0.88895 0.90081 0.90742 0.92277 0.91713 0.91222 0.83360 0.92017 0.91308 0.82267 0.81813 0.87328 0.91156 0.91134 0.92508 0.92681 0.98658 0.98548 0.92396 0.85717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.27 14.32 67.78 0.97 -3.30 16 2 C -0.14 -3.02 9.25 25.65 0.24 -2.78 16 3 C -0.08 -1.18 5.34 29.85 0.16 -1.02 16 4 C 0.09 1.28 2.58 44.91 0.12 1.40 16 5 H 0.07 1.15 7.80 -2.39 -0.02 1.13 16 6 C -0.18 -1.72 9.16 71.98 0.66 -1.06 16 7 N -0.69 -12.09 5.93 -495.57 -2.94 -15.03 16 8 C 0.11 2.08 5.61 85.56 0.48 2.56 16 9 C -0.08 -1.92 5.39 -19.86 -0.11 -2.03 16 10 C -0.11 -2.11 9.69 22.27 0.22 -1.89 16 11 C -0.16 -3.76 9.04 22.35 0.20 -3.56 16 12 C 0.07 2.42 6.70 22.57 0.15 2.58 16 13 O -0.34 -11.66 10.28 -79.61 -0.82 -12.48 16 14 C 0.02 0.37 9.81 113.37 1.11 1.48 16 15 C 0.07 2.61 6.70 22.57 0.15 2.76 16 16 O -0.34 -16.09 9.92 -79.62 -0.79 -16.88 16 17 C 0.09 4.20 4.68 71.98 0.34 4.54 16 18 C 0.03 1.85 5.34 29.85 0.16 2.00 16 19 C -0.55 -32.31 9.11 25.60 0.23 -32.07 16 20 H 0.07 3.86 7.74 -2.91 -0.02 3.83 16 21 C 0.00 0.12 5.46 84.65 0.46 0.58 16 22 N -0.93 -58.58 13.29 21.45 0.28 -58.30 16 23 Si 0.98 44.82 29.54 68.60 2.03 46.85 16 24 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 27 C -0.16 -5.29 8.69 22.35 0.19 -5.09 16 28 H 0.09 1.84 8.06 -2.91 -0.02 1.82 16 29 H 0.11 1.72 7.84 -2.91 -0.02 1.70 16 30 H 0.09 2.42 8.03 -2.91 -0.02 2.40 16 31 H 0.08 1.00 7.79 -2.38 -0.02 0.99 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 0.55 7.45 -2.39 -0.02 0.54 16 34 H 0.06 0.57 8.13 -2.39 -0.02 0.55 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.35 5.36 8.46 -89.69 -0.76 4.60 16 37 H 0.06 0.86 7.38 -2.39 -0.02 0.84 16 38 H 0.07 1.44 8.00 -2.39 -0.02 1.42 16 39 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.16 2.51 6.30 -2.91 -0.02 2.49 16 41 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 43 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 44 H 0.06 2.56 7.65 -2.38 -0.02 2.54 16 45 H 0.05 2.52 7.67 -2.39 -0.02 2.50 16 46 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 47 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 48 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 49 H 0.12 4.26 6.30 -2.91 -0.02 4.25 16 Total: -1.00 -74.39 404.16 3.65 -70.74 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.16 Total: 20.00 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 5.73 Total: -34.91 kcal Atomic # 7 Polarization: -70.67 SS G_CDS: -2.66 Total: -73.32 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -1.61 Total: -29.36 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -74.39 3.65 -70.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116927591.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.462 kcal (2) G-P(sol) polarization free energy of solvation -74.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds