Wall clock time and date at job start Tue Mar 31 2020 13:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99473 * 2 1 4 4 C 1.50697 * 109.47219 * 124.99747 * 3 2 1 5 5 C 1.38173 * 120.02953 * 264.72539 * 4 3 2 6 6 C 1.38246 * 120.05247 * 179.74768 * 5 4 3 7 7 C 1.38285 * 120.11532 * 0.54781 * 6 5 4 8 8 C 1.38130 * 120.05250 * 359.70170 * 7 6 5 9 9 C 1.38712 * 120.02613 * 84.99714 * 4 3 2 10 10 O 1.35896 * 120.05948 * 359.95909 * 9 4 3 11 11 C 1.42896 * 117.00481 * 179.97438 * 10 9 4 12 12 C 1.53001 * 109.47449 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47249 * 305.00246 * 12 11 10 14 14 O 1.42900 * 109.46662 * 65.00411 * 12 11 10 15 15 C 1.52994 * 109.46944 * 184.99914 * 12 11 10 16 16 N 1.46906 * 109.47013 * 178.05097 * 15 12 11 17 17 C 1.46895 * 111.00025 * 164.13832 * 16 15 12 18 18 C 1.46907 * 111.00036 * 288.09753 * 16 15 12 19 19 H 1.09002 * 109.47183 * 54.99546 * 18 16 15 20 20 C 1.53001 * 109.46826 * 294.99523 * 18 16 15 21 21 C 1.50702 * 109.46843 * 174.99892 * 18 16 15 22 22 H 1.07996 * 119.99799 * 95.30834 * 21 18 16 23 23 C 1.37871 * 119.99640 * 275.29822 * 21 18 16 24 24 N 1.31514 * 119.99968 * 181.68104 * 23 21 18 25 25 Si 1.86806 * 120.00324 * 1.68115 * 23 21 18 26 26 H 1.48500 * 109.46914 * 84.95428 * 25 23 21 27 27 H 1.48505 * 109.47040 * 204.95615 * 25 23 21 28 28 H 1.48494 * 109.47108 * 324.95444 * 25 23 21 29 29 H 1.07994 * 120.00639 * 0.02562 * 1 2 3 30 30 H 1.08007 * 119.99549 * 179.97438 * 1 2 3 31 31 H 1.07993 * 120.00459 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47185 * 4.99838 * 3 2 1 33 33 H 1.08999 * 109.47294 * 244.99634 * 3 2 1 34 34 H 1.07996 * 119.97094 * 0.02562 * 5 4 3 35 35 H 1.07998 * 119.94020 * 180.30078 * 6 5 4 36 36 H 1.07996 * 119.97686 * 179.72485 * 7 6 5 37 37 H 1.08000 * 120.02361 * 179.97438 * 8 7 6 38 38 H 1.08997 * 109.47020 * 300.00525 * 11 10 9 39 39 H 1.09005 * 109.46942 * 59.99733 * 11 10 9 40 40 H 0.96698 * 114.00519 * 59.99781 * 14 12 11 41 41 H 1.08995 * 109.47620 * 298.05196 * 15 12 11 42 42 H 1.09003 * 109.47259 * 58.05965 * 15 12 11 43 43 H 1.09004 * 109.47106 * 53.87960 * 17 16 15 44 44 H 1.09008 * 109.46708 * 173.87586 * 17 16 15 45 45 H 1.08995 * 109.47612 * 293.87312 * 17 16 15 46 46 H 1.09001 * 109.46752 * 62.94692 * 20 18 16 47 47 H 1.08997 * 109.47062 * 182.94447 * 20 18 16 48 48 H 1.09001 * 109.47027 * 302.94768 * 20 18 16 49 49 H 0.96997 * 120.00532 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0203 1.3329 1.1639 5 6 2.6479 1.9337 2.3511 6 6 3.5233 1.9548 3.4208 7 6 4.7777 1.3850 3.3021 8 6 5.1567 0.7877 2.1157 9 6 4.2778 0.7602 1.0424 10 8 4.6482 0.1727 -0.1257 11 6 5.9580 -0.3961 -0.1792 12 6 6.1929 -1.0069 -1.5622 13 1 5.3996 -1.7209 -1.7835 14 8 6.1901 0.0287 -2.5468 15 6 7.5442 -1.7240 -1.5801 16 7 7.7489 -2.3501 -2.8932 17 6 9.1577 -2.7183 -3.0870 18 6 6.8717 -3.5163 -3.0630 19 1 5.8363 -3.2194 -2.8958 20 6 7.2612 -4.5985 -2.0540 21 6 7.0199 -4.0568 -4.4619 22 1 7.7020 -4.8711 -4.6566 23 6 6.2844 -3.5120 -5.4929 24 7 6.3889 -4.0053 -6.7075 25 14 5.1393 -2.0730 -5.1647 26 1 5.9077 -0.8039 -5.2306 27 1 4.0629 -2.0536 -6.1876 28 1 4.5370 -2.2175 -3.8151 29 1 -0.5401 0.9352 -0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 1.3584 2.1316 0.0895 33 1 2.6212 1.4027 -0.9313 34 1 1.6704 2.3832 2.4448 35 1 3.2285 2.4207 4.3495 36 1 5.4615 1.4067 4.1377 37 1 6.1366 0.3431 2.0234 38 1 6.6995 0.3811 0.0059 39 1 6.0482 -1.1725 0.5806 40 1 6.8718 0.7012 -2.4124 41 1 8.3404 -1.0036 -1.3930 42 1 7.5588 -2.4911 -0.8058 43 1 9.4895 -3.3371 -2.2532 44 1 9.2627 -3.2761 -4.0177 45 1 9.7662 -1.8153 -3.1341 46 1 7.1043 -4.2252 -1.0421 47 1 6.6453 -5.4833 -2.2144 48 1 8.3116 -4.8579 -2.1869 49 1 5.8718 -3.6218 -7.4330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123691721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:59 Heat of formation + Delta-G solvation = -36.675132 kcal Electronic energy + Delta-G solvation = -27564.263696 eV Core-core repulsion = 23878.442144 eV Total energy + Delta-G solvation = -3685.821552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.45484 -38.51645 -37.36397 -35.79414 -35.24443 -32.38970 -31.49669 -30.81559 -30.00362 -29.33247 -26.62902 -26.33057 -25.50689 -23.61771 -22.31069 -21.97241 -21.22447 -19.84294 -19.01340 -18.03846 -17.02405 -16.67028 -16.31435 -16.10702 -15.44218 -15.11592 -14.93553 -14.70255 -14.53121 -14.21236 -13.95010 -13.69870 -13.36800 -13.22310 -12.99541 -12.86408 -12.54682 -12.26668 -12.02740 -11.97520 -11.67767 -11.60520 -11.35556 -11.25488 -11.11790 -11.05579 -10.88702 -10.77236 -10.49129 -10.27100 -9.81093 -9.68139 -9.51298 -9.39590 -9.02949 -8.95890 -8.48945 -8.25110 -7.21974 -5.99865 -4.06500 1.12131 1.28276 2.26337 3.04186 3.57898 3.58315 3.61352 3.80799 4.50884 4.59059 4.60896 4.64216 4.71603 4.84091 4.94204 4.98502 5.04586 5.09871 5.12891 5.21752 5.31133 5.36245 5.49523 5.52123 5.55834 5.65348 5.69018 5.84897 5.88942 5.93242 6.10597 6.15899 6.18025 6.24068 6.25478 6.29254 6.33275 6.35137 6.52547 6.55120 6.65730 6.72526 6.78953 6.98120 7.14770 7.33193 7.66776 8.00883 8.05238 8.26351 8.60145 8.99820 9.64656 11.10129 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014721 B = 0.003707 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.577967 B = 7551.637059 C = 8724.012965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 C -0.049 4.049 4 C -0.110 4.110 5 C -0.079 4.079 6 C -0.162 4.162 7 C -0.085 4.085 8 C -0.210 4.210 9 C 0.137 3.863 10 O -0.296 6.296 11 C 0.029 3.971 12 C 0.112 3.888 13 H 0.109 0.891 14 O -0.531 6.531 15 C 0.019 3.981 16 N -0.523 5.523 17 C 0.039 3.961 18 C 0.163 3.837 19 H 0.052 0.948 20 C -0.168 4.168 21 C -0.506 4.506 22 H 0.069 0.931 23 C 0.081 3.919 24 N -0.900 5.900 25 Si 0.909 3.091 26 H -0.261 1.261 27 H -0.309 1.309 28 H -0.272 1.272 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.364 0.636 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.008 0.992 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.026 0.974 47 H 0.054 0.946 48 H 0.046 0.954 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.308 12.170 20.182 23.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.152 4.152 3 C -0.085 4.085 4 C -0.111 4.111 5 C -0.097 4.097 6 C -0.180 4.180 7 C -0.103 4.103 8 C -0.229 4.229 9 C 0.091 3.909 10 O -0.209 6.209 11 C -0.047 4.047 12 C 0.052 3.948 13 H 0.126 0.874 14 O -0.334 6.334 15 C -0.110 4.110 16 N -0.248 5.248 17 C -0.109 4.109 18 C 0.058 3.942 19 H 0.070 0.930 20 C -0.227 4.227 21 C -0.544 4.544 22 H 0.087 0.913 23 C -0.123 4.123 24 N -0.537 5.537 25 Si 0.738 3.262 26 H -0.185 1.185 27 H -0.237 1.237 28 H -0.198 1.198 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.210 0.790 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.026 0.974 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.045 0.955 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.084 12.146 19.197 23.279 hybrid contribution 0.437 0.319 1.253 1.365 sum -4.647 12.465 20.450 24.396 Atomic orbital electron populations 1.23782 0.95748 1.01658 1.02805 1.22873 0.95722 0.98353 0.98298 1.19611 0.96434 0.95703 0.96795 1.19143 0.92982 1.02234 0.96745 1.20867 0.99305 0.97805 0.91698 1.20992 0.94626 1.03293 0.99077 1.20913 0.96269 0.96367 0.96720 1.21266 1.00610 1.06740 0.94292 1.18941 0.93242 0.93231 0.85459 1.86197 1.33424 1.69699 1.31566 1.23715 0.82735 0.97602 1.00656 1.21987 0.98883 0.89772 0.84141 0.87352 1.86754 1.57988 1.37535 1.51152 1.22682 0.95728 0.98385 0.94247 1.62834 1.05992 1.31302 1.24639 1.22127 0.88712 0.98708 1.01363 1.20009 0.93236 0.85235 0.95712 0.93018 1.22346 1.01267 1.01201 0.97858 1.20768 1.25731 1.17883 0.90060 0.91258 1.25080 0.96356 0.96197 0.94641 1.69946 1.41631 1.41543 1.00588 0.86412 0.79453 0.83787 0.76519 1.18530 1.23662 1.19784 0.88761 0.88531 0.87283 0.90822 0.89194 0.85611 0.86089 0.86017 0.85546 0.91853 0.91429 0.79008 0.91847 0.94352 0.97406 0.89670 0.93922 0.95539 0.92737 0.93462 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.13 14.32 29.01 0.42 -1.71 16 2 C -0.13 -1.63 9.50 -36.03 -0.34 -1.97 16 3 C -0.05 -0.57 5.51 -29.04 -0.16 -0.73 16 4 C -0.11 -1.32 5.13 -104.47 -0.54 -1.86 16 5 C -0.08 -0.79 9.68 -39.60 -0.38 -1.18 16 6 C -0.16 -1.50 10.04 -39.56 -0.40 -1.90 16 7 C -0.08 -0.81 10.04 -39.60 -0.40 -1.21 16 8 C -0.21 -2.32 9.04 -39.43 -0.36 -2.68 16 9 C 0.14 1.77 6.66 -39.22 -0.26 1.51 16 10 O -0.30 -4.30 9.24 -24.27 -0.22 -4.52 16 11 C 0.03 0.37 4.37 37.16 0.16 0.53 16 12 C 0.11 1.82 3.27 -26.73 -0.09 1.73 16 13 H 0.11 2.09 6.11 -51.93 -0.32 1.78 16 14 O -0.53 -9.42 12.63 -40.08 -0.51 -9.92 16 15 C 0.02 0.30 4.49 -3.82 -0.02 0.28 16 16 N -0.52 -10.71 4.26 -236.28 -1.01 -11.71 16 17 C 0.04 0.74 8.67 60.06 0.52 1.26 16 18 C 0.16 3.73 1.61 -68.86 -0.11 3.62 16 19 H 0.05 1.25 4.00 -51.93 -0.21 1.05 16 20 C -0.17 -3.32 8.53 37.16 0.32 -3.00 16 21 C -0.51 -13.99 7.57 -34.44 -0.26 -14.25 16 22 H 0.07 2.07 8.05 -52.49 -0.42 1.65 16 23 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 24 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 25 Si 0.91 23.84 26.75 -169.99 -4.55 19.29 16 26 H -0.26 -6.95 7.11 56.52 0.40 -6.54 16 27 H -0.31 -8.19 7.11 56.52 0.40 -7.79 16 28 H -0.27 -6.92 5.66 56.52 0.32 -6.61 16 29 H 0.09 0.85 7.84 -52.49 -0.41 0.43 16 30 H 0.10 0.94 8.06 -52.48 -0.42 0.51 16 31 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.07 0.71 7.70 -51.93 -0.40 0.31 16 33 H 0.09 1.19 7.69 -51.93 -0.40 0.79 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.13 1.22 6.30 -52.49 -0.33 0.89 16 38 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16 39 H 0.07 0.77 7.66 -51.93 -0.40 0.37 16 40 H 0.36 4.88 9.05 45.56 0.41 5.29 16 41 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16 42 H 0.04 0.58 6.03 -51.93 -0.31 0.27 16 43 H 0.01 0.13 6.79 -51.93 -0.35 -0.22 16 44 H 0.08 1.86 6.80 -51.92 -0.35 1.51 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.03 0.45 6.43 -51.93 -0.33 0.12 16 47 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 48 H 0.05 0.92 6.46 -51.93 -0.34 0.58 16 49 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -32.56 388.07 -8.81 -41.37 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.15 Total: 5.91 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -1.99 Total: -19.27 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: -0.23 Total: -38.70 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.73 Total: -14.44 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -4.55 Total: 19.29 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.56 -8.81 -41.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123691721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.696 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds