Wall clock time and date at job start Tue Mar 31 2020 13:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99473 * 2 1 4 4 C 1.50697 * 109.47219 * 124.99747 * 3 2 1 5 5 C 1.38173 * 120.02953 * 264.72539 * 4 3 2 6 6 C 1.38246 * 120.05247 * 179.74768 * 5 4 3 7 7 C 1.38285 * 120.11532 * 0.54781 * 6 5 4 8 8 C 1.38130 * 120.05250 * 359.70170 * 7 6 5 9 9 C 1.38712 * 120.02613 * 84.99714 * 4 3 2 10 10 O 1.35896 * 120.05948 * 359.95909 * 9 4 3 11 11 C 1.42896 * 117.00481 * 179.97438 * 10 9 4 12 12 C 1.53001 * 109.47449 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47249 * 305.00246 * 12 11 10 14 14 O 1.42900 * 109.46662 * 65.00411 * 12 11 10 15 15 C 1.52994 * 109.46944 * 184.99914 * 12 11 10 16 16 N 1.46906 * 109.47013 * 178.05097 * 15 12 11 17 17 C 1.46895 * 111.00025 * 164.13832 * 16 15 12 18 18 C 1.46907 * 111.00036 * 288.09753 * 16 15 12 19 19 H 1.09002 * 109.47183 * 54.99546 * 18 16 15 20 20 C 1.53001 * 109.46826 * 294.99523 * 18 16 15 21 21 C 1.50702 * 109.46843 * 174.99892 * 18 16 15 22 22 H 1.07996 * 119.99799 * 95.30834 * 21 18 16 23 23 C 1.37871 * 119.99640 * 275.29822 * 21 18 16 24 24 N 1.31514 * 119.99968 * 181.68104 * 23 21 18 25 25 Si 1.86806 * 120.00324 * 1.68115 * 23 21 18 26 26 H 1.48500 * 109.46914 * 84.95428 * 25 23 21 27 27 H 1.48505 * 109.47040 * 204.95615 * 25 23 21 28 28 H 1.48494 * 109.47108 * 324.95444 * 25 23 21 29 29 H 1.07994 * 120.00639 * 0.02562 * 1 2 3 30 30 H 1.08007 * 119.99549 * 179.97438 * 1 2 3 31 31 H 1.07993 * 120.00459 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47185 * 4.99838 * 3 2 1 33 33 H 1.08999 * 109.47294 * 244.99634 * 3 2 1 34 34 H 1.07996 * 119.97094 * 0.02562 * 5 4 3 35 35 H 1.07998 * 119.94020 * 180.30078 * 6 5 4 36 36 H 1.07996 * 119.97686 * 179.72485 * 7 6 5 37 37 H 1.08000 * 120.02361 * 179.97438 * 8 7 6 38 38 H 1.08997 * 109.47020 * 300.00525 * 11 10 9 39 39 H 1.09005 * 109.46942 * 59.99733 * 11 10 9 40 40 H 0.96698 * 114.00519 * 59.99781 * 14 12 11 41 41 H 1.08995 * 109.47620 * 298.05196 * 15 12 11 42 42 H 1.09003 * 109.47259 * 58.05965 * 15 12 11 43 43 H 1.09004 * 109.47106 * 53.87960 * 17 16 15 44 44 H 1.09008 * 109.46708 * 173.87586 * 17 16 15 45 45 H 1.08995 * 109.47612 * 293.87312 * 17 16 15 46 46 H 1.09001 * 109.46752 * 62.94692 * 20 18 16 47 47 H 1.08997 * 109.47062 * 182.94447 * 20 18 16 48 48 H 1.09001 * 109.47027 * 302.94768 * 20 18 16 49 49 H 0.96997 * 120.00532 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0203 1.3329 1.1639 5 6 2.6479 1.9337 2.3511 6 6 3.5233 1.9548 3.4208 7 6 4.7777 1.3850 3.3021 8 6 5.1567 0.7877 2.1157 9 6 4.2778 0.7602 1.0424 10 8 4.6482 0.1727 -0.1257 11 6 5.9580 -0.3961 -0.1792 12 6 6.1929 -1.0069 -1.5622 13 1 5.3996 -1.7209 -1.7835 14 8 6.1901 0.0287 -2.5468 15 6 7.5442 -1.7240 -1.5801 16 7 7.7489 -2.3501 -2.8932 17 6 9.1577 -2.7183 -3.0870 18 6 6.8717 -3.5163 -3.0630 19 1 5.8363 -3.2194 -2.8958 20 6 7.2612 -4.5985 -2.0540 21 6 7.0199 -4.0568 -4.4619 22 1 7.7020 -4.8711 -4.6566 23 6 6.2844 -3.5120 -5.4929 24 7 6.3889 -4.0053 -6.7075 25 14 5.1393 -2.0730 -5.1647 26 1 5.9077 -0.8039 -5.2306 27 1 4.0629 -2.0536 -6.1876 28 1 4.5370 -2.2175 -3.8151 29 1 -0.5401 0.9352 -0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 1.3584 2.1316 0.0895 33 1 2.6212 1.4027 -0.9313 34 1 1.6704 2.3832 2.4448 35 1 3.2285 2.4207 4.3495 36 1 5.4615 1.4067 4.1377 37 1 6.1366 0.3431 2.0234 38 1 6.6995 0.3811 0.0059 39 1 6.0482 -1.1725 0.5806 40 1 6.8718 0.7012 -2.4124 41 1 8.3404 -1.0036 -1.3930 42 1 7.5588 -2.4911 -0.8058 43 1 9.4895 -3.3371 -2.2532 44 1 9.2627 -3.2761 -4.0177 45 1 9.7662 -1.8153 -3.1341 46 1 7.1043 -4.2252 -1.0421 47 1 6.6453 -5.4833 -2.2144 48 1 8.3116 -4.8579 -2.1869 49 1 5.8718 -3.6218 -7.4330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123691721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:58 Heat of formation + Delta-G solvation = -58.922570 kcal Electronic energy + Delta-G solvation = -27565.228417 eV Core-core repulsion = 23878.442144 eV Total energy + Delta-G solvation = -3686.786273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.31820 -39.80098 -38.48572 -37.15441 -36.07849 -34.50454 -32.42195 -31.99423 -31.27678 -30.54746 -27.83138 -27.41574 -27.21210 -25.05796 -23.53524 -22.79762 -22.24389 -20.79468 -20.63413 -19.02492 -18.94703 -17.80513 -17.48470 -16.91919 -16.66621 -16.43593 -16.16121 -15.88311 -15.73362 -15.54366 -15.15417 -14.88006 -14.77559 -14.52125 -14.23409 -14.12183 -13.84380 -13.44274 -13.36434 -13.29250 -12.94298 -12.83566 -12.71735 -12.43840 -12.39892 -12.22805 -12.08541 -12.02904 -11.90403 -11.78212 -11.58201 -11.50573 -10.98646 -10.90925 -10.72742 -10.26923 -9.78334 -9.07230 -8.77409 -8.26875 -6.33137 0.36861 0.50559 1.39149 1.42738 1.49816 1.64631 2.11205 2.43589 2.82076 2.98224 3.46051 3.57437 3.82482 3.86243 3.91218 3.97244 4.10831 4.12881 4.22908 4.28012 4.29991 4.31857 4.44561 4.48380 4.49862 4.59134 4.60647 4.68468 4.68625 4.73892 4.80077 4.92397 4.92484 5.02753 5.04025 5.12888 5.19685 5.37381 5.40695 5.41653 5.51274 5.60758 5.66875 5.70666 5.84930 5.90924 6.14556 6.46804 6.52438 6.65870 6.83370 6.97398 7.39695 8.87295 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014721 B = 0.003707 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.577967 B = 7551.637059 C = 8724.012965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.158 4.158 3 C -0.043 4.043 4 C -0.129 4.129 5 C -0.083 4.083 6 C -0.160 4.160 7 C -0.088 4.088 8 C -0.217 4.217 9 C 0.110 3.890 10 O -0.323 6.323 11 C 0.038 3.962 12 C 0.114 3.886 13 H 0.070 0.930 14 O -0.560 6.560 15 C 0.024 3.976 16 N -0.545 5.545 17 C 0.044 3.956 18 C 0.168 3.832 19 H 0.039 0.961 20 C -0.161 4.161 21 C -0.497 4.497 22 H 0.035 0.965 23 C 0.031 3.969 24 N -0.947 5.947 25 Si 0.967 3.033 26 H -0.265 1.265 27 H -0.315 1.315 28 H -0.265 1.265 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.382 0.618 41 H 0.098 0.902 42 H 0.055 0.945 43 H 0.028 0.972 44 H 0.045 0.955 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.045 0.955 48 H 0.049 0.951 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.215 14.225 24.059 28.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.176 4.176 3 C -0.080 4.080 4 C -0.130 4.130 5 C -0.101 4.101 6 C -0.178 4.178 7 C -0.106 4.106 8 C -0.235 4.235 9 C 0.065 3.935 10 O -0.237 6.237 11 C -0.038 4.038 12 C 0.054 3.946 13 H 0.088 0.912 14 O -0.366 6.366 15 C -0.104 4.104 16 N -0.270 5.270 17 C -0.103 4.103 18 C 0.061 3.939 19 H 0.057 0.943 20 C -0.220 4.220 21 C -0.535 4.535 22 H 0.053 0.947 23 C -0.168 4.168 24 N -0.588 5.588 25 Si 0.796 3.204 26 H -0.190 1.190 27 H -0.243 1.243 28 H -0.190 1.190 29 H 0.132 0.868 30 H 0.121 0.879 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.163 0.837 35 H 0.166 0.834 36 H 0.166 0.834 37 H 0.158 0.842 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.230 0.770 41 H 0.116 0.884 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.973 14.209 23.108 27.579 hybrid contribution 0.431 -0.318 0.152 0.556 sum -4.543 13.892 23.260 27.470 Atomic orbital electron populations 1.23994 0.95153 1.02899 1.00388 1.22823 0.96392 0.97832 1.00598 1.19539 0.96576 0.96067 0.95857 1.19359 0.93022 1.03080 0.97555 1.21155 1.00427 0.97334 0.91186 1.21383 0.94276 1.02399 0.99755 1.21291 0.96904 0.95441 0.96923 1.21490 1.00907 1.06894 0.94252 1.19208 0.94245 0.94466 0.85585 1.86144 1.34210 1.70454 1.32926 1.23566 0.83038 0.98668 0.98478 1.21852 0.97736 0.89181 0.85794 0.91203 1.86689 1.59205 1.38434 1.52280 1.22728 0.96719 0.99122 0.91866 1.62415 1.06217 1.30087 1.28251 1.22066 0.88314 0.99792 1.00173 1.19760 0.93418 0.87060 0.93614 0.94311 1.22223 1.01151 0.99880 0.98718 1.21073 1.23563 1.16360 0.92536 0.94680 1.25726 0.98121 0.98397 0.94572 1.70057 1.43629 1.43537 1.01566 0.85499 0.77677 0.80980 0.76294 1.19043 1.24343 1.19012 0.86803 0.87920 0.89491 0.88921 0.91751 0.83661 0.83396 0.83390 0.84239 0.89267 0.89947 0.76978 0.88424 0.92691 0.95323 0.93590 0.91338 0.92205 0.93563 0.93181 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.70 14.32 67.78 0.97 -2.73 16 2 C -0.16 -3.84 9.50 25.65 0.24 -3.60 16 3 C -0.04 -1.01 5.51 29.10 0.16 -0.85 16 4 C -0.13 -2.98 5.13 -19.77 -0.10 -3.08 16 5 C -0.08 -1.48 9.68 22.26 0.22 -1.26 16 6 C -0.16 -2.43 10.04 22.28 0.22 -2.21 16 7 C -0.09 -1.39 10.04 22.26 0.22 -1.16 16 8 C -0.22 -4.24 9.04 22.37 0.20 -4.04 16 9 C 0.11 2.72 6.66 22.51 0.15 2.87 16 10 O -0.32 -9.23 9.24 -87.75 -0.81 -10.04 16 11 C 0.04 0.89 4.37 71.98 0.31 1.20 16 12 C 0.11 3.53 3.27 30.59 0.10 3.63 16 13 H 0.07 2.70 6.11 -2.39 -0.01 2.68 16 14 O -0.56 -19.23 12.63 -144.34 -1.82 -21.06 16 15 C 0.02 0.69 4.49 86.30 0.39 1.08 16 16 N -0.55 -21.47 4.26 -901.44 -3.84 -25.31 16 17 C 0.04 1.61 8.67 127.69 1.11 2.72 16 18 C 0.17 7.64 1.61 44.17 0.07 7.71 16 19 H 0.04 1.89 4.00 -2.39 -0.01 1.88 16 20 C -0.16 -6.13 8.53 71.98 0.61 -5.52 16 21 C -0.50 -28.26 7.57 25.60 0.19 -28.07 16 22 H 0.03 2.19 8.05 -2.91 -0.02 2.17 16 23 C 0.03 1.84 5.47 84.65 0.46 2.30 16 24 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 25 Si 0.97 51.09 26.75 68.60 1.84 52.93 16 26 H -0.27 -14.10 7.11 99.48 0.71 -13.39 16 27 H -0.31 -16.78 7.11 99.48 0.71 -16.07 16 28 H -0.26 -13.53 5.66 99.48 0.56 -12.97 16 29 H 0.11 1.78 7.84 -2.91 -0.02 1.75 16 30 H 0.10 1.86 8.06 -2.91 -0.02 1.84 16 31 H 0.09 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.09 1.69 7.70 -2.39 -0.02 1.67 16 33 H 0.06 1.78 7.69 -2.39 -0.02 1.77 16 34 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 36 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 37 H 0.14 2.22 6.30 -2.91 -0.02 2.20 16 38 H 0.09 1.58 7.66 -2.39 -0.02 1.57 16 39 H 0.08 1.64 7.66 -2.38 -0.02 1.62 16 40 H 0.38 9.50 9.05 -74.06 -0.67 8.83 16 41 H 0.10 2.20 8.00 -2.39 -0.02 2.18 16 42 H 0.06 1.44 6.03 -2.39 -0.01 1.42 16 43 H 0.03 0.91 6.79 -2.39 -0.02 0.89 16 44 H 0.05 2.01 6.80 -2.38 -0.02 2.00 16 45 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.06 1.87 6.43 -2.39 -0.02 1.86 16 47 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.05 1.86 6.46 -2.39 -0.02 1.85 16 49 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -74.31 388.07 1.32 -72.99 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.12 Total: 22.01 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 5.54 Total: -31.01 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -3.54 Total: -85.82 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -2.63 Total: -31.10 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 1.84 Total: 52.93 kcal Total: -74.31 1.32 -72.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123691721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.067 kcal (2) G-P(sol) polarization free energy of solvation -74.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds