Wall clock time and date at job start Tue Mar 31 2020 12:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00067 * 2 1 4 4 C 1.53003 * 109.47302 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46677 * 64.99765 * 4 3 2 6 6 C 1.46497 * 120.00598 * 270.00175 * 5 4 3 7 7 C 1.50700 * 109.47135 * 270.00454 * 6 5 4 8 8 H 1.08006 * 119.99958 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00496 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99611 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00364 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47107 * 60.00381 * 11 9 7 13 13 H 1.48500 * 109.47125 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47463 * 299.99954 * 11 9 7 15 15 C 1.34778 * 119.99665 * 90.00047 * 5 4 3 16 16 O 1.21279 * 119.99960 * 179.97438 * 15 5 4 17 17 C 1.50701 * 119.99965 * 0.02562 * 15 5 4 18 18 C 1.53006 * 109.47024 * 179.97438 * 17 15 5 19 19 C 1.53000 * 109.46846 * 179.97438 * 18 17 15 20 20 H 1.09002 * 109.47398 * 305.00335 * 19 18 17 21 21 C 1.53002 * 109.47233 * 65.00509 * 19 18 17 22 22 C 1.50703 * 109.46912 * 185.00257 * 19 18 17 23 23 C 1.38237 * 119.99747 * 299.72651 * 22 19 18 24 24 C 1.38240 * 119.99788 * 179.81066 * 23 22 19 25 25 C 1.38236 * 119.99657 * 0.39831 * 24 23 22 26 26 C 1.38230 * 120.00403 * 359.85459 * 25 24 23 27 27 C 1.38232 * 120.00112 * 120.00202 * 22 19 18 28 28 H 1.09004 * 109.46952 * 299.99715 * 1 2 3 29 29 H 1.08995 * 109.47137 * 60.00123 * 1 2 3 30 30 H 1.09000 * 109.46934 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46734 * 60.00207 * 3 2 1 32 32 H 1.08994 * 109.46840 * 300.00150 * 3 2 1 33 33 H 1.09002 * 109.46922 * 305.00311 * 4 3 2 34 34 H 1.08994 * 109.47105 * 185.00187 * 4 3 2 35 35 H 1.09000 * 109.47208 * 29.99950 * 6 5 4 36 36 H 1.09001 * 109.47844 * 150.00376 * 6 5 4 37 37 H 0.96995 * 120.00379 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.47229 * 59.99900 * 17 15 5 39 39 H 1.09001 * 109.47286 * 299.99728 * 17 15 5 40 40 H 1.09002 * 109.46824 * 60.00111 * 18 17 15 41 41 H 1.08991 * 109.47210 * 300.00195 * 18 17 15 42 42 H 1.09000 * 109.46986 * 299.99797 * 21 19 18 43 43 H 1.09002 * 109.47075 * 59.99068 * 21 19 18 44 44 H 1.08996 * 109.47407 * 180.02562 * 21 19 18 45 45 H 1.08003 * 120.00234 * 0.02562 * 23 22 19 46 46 H 1.07995 * 119.99993 * 180.23158 * 24 23 22 47 47 H 1.08005 * 119.99783 * 179.83592 * 25 24 23 48 48 H 1.08000 * 120.00473 * 179.97438 * 26 25 24 49 49 H 1.08005 * 119.99991 * 359.97438 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1062 -0.8925 -1.3404 7 6 5.5017 -1.2982 -0.9413 8 1 6.2203 -0.5462 -0.6505 9 6 5.8611 -2.6292 -0.9474 10 7 4.9859 -3.5450 -1.3010 11 14 7.5909 -3.1319 -0.4534 12 1 7.8538 -2.6958 0.9417 13 1 7.7219 -4.6084 -0.5428 14 1 8.5722 -2.4914 -1.3655 15 6 4.2633 1.3329 -2.3200 16 8 4.6289 0.8191 -3.3560 17 6 4.1305 2.8312 -2.2278 18 6 4.5138 3.4607 -3.5687 19 6 4.3784 4.9818 -3.4753 20 1 3.3708 5.2375 -3.1473 21 6 5.3953 5.5235 -2.4686 22 6 4.6365 5.5931 -4.8283 23 6 5.8581 5.4087 -5.4484 24 6 6.0935 5.9662 -6.6913 25 6 5.1101 6.7149 -7.3104 26 6 3.8904 6.9037 -6.6880 27 6 3.6537 6.3430 -5.4468 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8463 -0.8899 33 1 3.8508 0.5685 0.8427 34 1 3.9785 2.1765 0.0902 35 1 3.3858 -1.3632 -0.6714 36 1 3.9139 -1.2123 -2.3645 37 1 5.2387 -4.4814 -1.3056 38 1 4.7926 3.2074 -1.4478 39 1 3.0998 3.0905 -1.9858 40 1 3.8520 3.0846 -4.3490 41 1 5.5445 3.2014 -3.8104 42 1 5.2086 5.0813 -1.4899 43 1 6.4028 5.2677 -2.7965 44 1 5.2985 6.6071 -2.4016 45 1 6.6275 4.8262 -4.9634 46 1 7.0466 5.8190 -7.1774 47 1 5.2950 7.1527 -8.2803 48 1 3.1222 7.4890 -7.1715 49 1 2.7006 6.4904 -4.9606 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132768656.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:44 Heat of formation + Delta-G solvation = -73.522546 kcal Electronic energy + Delta-G solvation = -26911.712419 eV Core-core repulsion = 23224.293044 eV Total energy + Delta-G solvation = -3687.419375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.73557 -39.03732 -37.49736 -35.89141 -34.72699 -32.65542 -31.23049 -30.97401 -29.54535 -28.92837 -27.12606 -25.93427 -25.11359 -23.22664 -22.69227 -22.61726 -21.67803 -19.79352 -18.31287 -17.05137 -16.62255 -16.38705 -16.06504 -15.58709 -15.50616 -15.15533 -14.94784 -14.82190 -14.46138 -14.17312 -13.73885 -13.69324 -13.43246 -13.35435 -12.80968 -12.70778 -12.31501 -12.14410 -12.01440 -11.81883 -11.71022 -11.62981 -11.48875 -11.24328 -11.13270 -10.90954 -10.87368 -10.72835 -10.66103 -10.43797 -10.29369 -10.06899 -9.53638 -9.41542 -9.00111 -8.84384 -8.70004 -8.31605 -7.54788 -5.92903 -3.97028 1.28152 1.31963 3.37369 3.41533 3.43475 3.51959 3.69592 3.98495 4.09145 4.52082 4.57780 4.68662 4.90017 4.95142 5.01284 5.08066 5.22499 5.26890 5.34013 5.38474 5.40325 5.41478 5.44793 5.47463 5.50118 5.54442 5.59146 5.64438 5.68176 5.78902 5.85516 5.88019 5.90809 5.98286 6.01065 6.07714 6.26673 6.30612 6.38945 6.44055 6.49102 6.62686 6.92750 7.31834 7.42695 7.63376 7.69042 8.05159 8.37495 8.56399 9.01699 9.20938 9.66752 11.15096 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011581 B = 0.003195 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.141472 B = 8760.305666 C =10360.134210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.044 3.956 4 C 0.112 3.888 5 N -0.591 5.591 6 C 0.250 3.750 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.501 3.499 16 O -0.541 6.541 17 C -0.142 4.142 18 C -0.093 4.093 19 C -0.054 4.054 20 H 0.077 0.923 21 C -0.146 4.146 22 C -0.069 4.069 23 C -0.111 4.111 24 C -0.119 4.119 25 C -0.130 4.130 26 C -0.122 4.122 27 C -0.120 4.120 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.038 0.962 37 H 0.262 0.738 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.118 0.882 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.848 21.682 -2.074 22.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.034 4.034 4 C -0.013 4.013 5 N -0.323 5.323 6 C 0.131 3.869 7 C -0.564 4.564 8 H 0.072 0.928 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.287 3.713 16 O -0.419 6.419 17 C -0.183 4.183 18 C -0.131 4.131 19 C -0.073 4.073 20 H 0.095 0.905 21 C -0.203 4.203 22 C -0.069 4.069 23 C -0.129 4.129 24 C -0.137 4.137 25 C -0.148 4.148 26 C -0.140 4.140 27 C -0.138 4.138 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.141 0.859 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.136 0.864 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.564 20.999 -2.639 21.883 hybrid contribution 0.642 -0.108 0.327 0.728 sum -4.922 20.891 -2.311 21.587 Atomic orbital electron populations 1.22698 0.82093 1.02597 0.99067 1.88112 1.18676 1.26949 1.95120 1.23123 0.95458 0.85435 0.99420 1.21493 0.91086 0.98966 0.89708 1.48188 1.64312 1.09885 1.09871 1.19272 0.96579 0.72334 0.98738 1.21443 0.97542 0.92154 1.45265 0.92767 1.24915 0.97294 0.96444 0.95450 1.69936 1.34320 1.00952 1.48111 0.86608 0.84912 0.77274 0.78873 1.20344 1.21263 1.20297 1.20399 0.78283 0.88553 0.84042 1.90666 1.46648 1.75118 1.29487 1.21808 1.02721 0.94048 0.99677 1.21370 1.03356 0.91764 0.96621 1.20240 1.00066 0.95359 0.91607 0.90509 1.21907 0.99072 1.00535 0.98780 1.19911 0.93870 0.96922 0.96229 1.21083 0.97066 0.99479 0.95296 1.21160 0.99273 0.97816 0.95446 1.21112 0.93987 0.99721 0.99937 1.21104 0.97180 1.00175 0.95501 1.21070 0.98880 0.98243 0.95590 0.94698 0.94631 0.89783 0.93162 0.93751 0.89111 0.90096 0.93771 0.94417 0.92835 0.89407 0.90031 0.91188 0.90912 0.91909 0.92302 0.92822 0.85893 0.86208 0.86430 0.86357 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.41 9.53 -35.23 -0.34 -6.75 16 3 C 0.04 0.62 6.28 37.16 0.23 0.85 16 4 C 0.11 1.81 5.62 -4.04 -0.02 1.79 16 5 N -0.59 -12.68 2.42 -175.06 -0.42 -13.11 16 6 C 0.25 6.78 4.98 -5.20 -0.03 6.76 16 7 C -0.53 -15.30 9.39 -34.44 -0.32 -15.63 16 8 H 0.05 1.56 7.81 -52.48 -0.41 1.15 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -27.42 13.29 55.43 0.74 -26.68 16 11 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.50 10.41 7.67 -10.98 -0.08 10.32 16 16 O -0.54 -13.87 15.56 5.56 0.09 -13.78 16 17 C -0.14 -2.01 4.01 -27.88 -0.11 -2.12 16 18 C -0.09 -1.28 3.71 -26.73 -0.10 -1.38 16 19 C -0.05 -0.57 2.56 -91.77 -0.24 -0.81 16 20 H 0.08 0.72 7.88 -51.93 -0.41 0.31 16 21 C -0.15 -1.37 8.76 37.16 0.33 -1.04 16 22 C -0.07 -0.77 4.78 -104.62 -0.50 -1.27 16 23 C -0.11 -1.27 8.76 -39.58 -0.35 -1.61 16 24 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 25 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 26 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 27 C -0.12 -1.23 9.67 -39.58 -0.38 -1.61 16 28 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.04 0.59 7.30 -51.93 -0.38 0.21 16 33 H 0.09 1.58 8.07 -51.93 -0.42 1.16 16 34 H 0.08 1.00 6.44 -51.93 -0.33 0.67 16 35 H 0.04 1.25 7.12 -51.93 -0.37 0.88 16 36 H 0.04 1.17 7.42 -51.93 -0.39 0.78 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.09 1.07 5.83 -51.93 -0.30 0.77 16 39 H 0.08 0.96 7.26 -51.93 -0.38 0.59 16 40 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 41 H 0.07 1.11 7.54 -51.93 -0.39 0.72 16 42 H 0.06 0.55 6.57 -51.93 -0.34 0.20 16 43 H 0.06 0.58 7.37 -51.93 -0.38 0.19 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.12 1.36 7.16 -52.48 -0.38 0.98 16 46 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 47 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 48 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 49 H 0.12 1.01 7.95 -52.48 -0.42 0.60 16 LS Contribution 397.47 15.07 5.99 5.99 Total: -1.00 -35.58 397.47 -8.95 -44.53 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -8.23 Total: -0.15 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -1.75 Total: -7.40 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.31 Total: -39.79 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.25 Total: -20.53 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.58 -8.95 -44.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132768656.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.990 kcal (2) G-P(sol) polarization free energy of solvation -35.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds