Wall clock time and date at job start Tue Mar 31 2020 12:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00067 * 2 1 4 4 C 1.53003 * 109.47302 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46677 * 64.99765 * 4 3 2 6 6 C 1.46497 * 120.00598 * 270.00175 * 5 4 3 7 7 C 1.50700 * 109.47135 * 270.00454 * 6 5 4 8 8 H 1.08006 * 119.99958 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00496 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99611 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00364 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47107 * 60.00381 * 11 9 7 13 13 H 1.48500 * 109.47125 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47463 * 299.99954 * 11 9 7 15 15 C 1.34778 * 119.99665 * 90.00047 * 5 4 3 16 16 O 1.21279 * 119.99960 * 179.97438 * 15 5 4 17 17 C 1.50701 * 119.99965 * 0.02562 * 15 5 4 18 18 C 1.53006 * 109.47024 * 179.97438 * 17 15 5 19 19 C 1.53000 * 109.46846 * 179.97438 * 18 17 15 20 20 H 1.09002 * 109.47398 * 305.00335 * 19 18 17 21 21 C 1.53002 * 109.47233 * 65.00509 * 19 18 17 22 22 C 1.50703 * 109.46912 * 185.00257 * 19 18 17 23 23 C 1.38237 * 119.99747 * 299.72651 * 22 19 18 24 24 C 1.38240 * 119.99788 * 179.81066 * 23 22 19 25 25 C 1.38236 * 119.99657 * 0.39831 * 24 23 22 26 26 C 1.38230 * 120.00403 * 359.85459 * 25 24 23 27 27 C 1.38232 * 120.00112 * 120.00202 * 22 19 18 28 28 H 1.09004 * 109.46952 * 299.99715 * 1 2 3 29 29 H 1.08995 * 109.47137 * 60.00123 * 1 2 3 30 30 H 1.09000 * 109.46934 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46734 * 60.00207 * 3 2 1 32 32 H 1.08994 * 109.46840 * 300.00150 * 3 2 1 33 33 H 1.09002 * 109.46922 * 305.00311 * 4 3 2 34 34 H 1.08994 * 109.47105 * 185.00187 * 4 3 2 35 35 H 1.09000 * 109.47208 * 29.99950 * 6 5 4 36 36 H 1.09001 * 109.47844 * 150.00376 * 6 5 4 37 37 H 0.96995 * 120.00379 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.47229 * 59.99900 * 17 15 5 39 39 H 1.09001 * 109.47286 * 299.99728 * 17 15 5 40 40 H 1.09002 * 109.46824 * 60.00111 * 18 17 15 41 41 H 1.08991 * 109.47210 * 300.00195 * 18 17 15 42 42 H 1.09000 * 109.46986 * 299.99797 * 21 19 18 43 43 H 1.09002 * 109.47075 * 59.99068 * 21 19 18 44 44 H 1.08996 * 109.47407 * 180.02562 * 21 19 18 45 45 H 1.08003 * 120.00234 * 0.02562 * 23 22 19 46 46 H 1.07995 * 119.99993 * 180.23158 * 24 23 22 47 47 H 1.08005 * 119.99783 * 179.83592 * 25 24 23 48 48 H 1.08000 * 120.00473 * 179.97438 * 26 25 24 49 49 H 1.08005 * 119.99991 * 359.97438 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1062 -0.8925 -1.3404 7 6 5.5017 -1.2982 -0.9413 8 1 6.2203 -0.5462 -0.6505 9 6 5.8611 -2.6292 -0.9474 10 7 4.9859 -3.5450 -1.3010 11 14 7.5909 -3.1319 -0.4534 12 1 7.8538 -2.6958 0.9417 13 1 7.7219 -4.6084 -0.5428 14 1 8.5722 -2.4914 -1.3655 15 6 4.2633 1.3329 -2.3200 16 8 4.6289 0.8191 -3.3560 17 6 4.1305 2.8312 -2.2278 18 6 4.5138 3.4607 -3.5687 19 6 4.3784 4.9818 -3.4753 20 1 3.3708 5.2375 -3.1473 21 6 5.3953 5.5235 -2.4686 22 6 4.6365 5.5931 -4.8283 23 6 5.8581 5.4087 -5.4484 24 6 6.0935 5.9662 -6.6913 25 6 5.1101 6.7149 -7.3104 26 6 3.8904 6.9037 -6.6880 27 6 3.6537 6.3430 -5.4468 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8463 -0.8899 33 1 3.8508 0.5685 0.8427 34 1 3.9785 2.1765 0.0902 35 1 3.3858 -1.3632 -0.6714 36 1 3.9139 -1.2123 -2.3645 37 1 5.2387 -4.4814 -1.3056 38 1 4.7926 3.2074 -1.4478 39 1 3.0998 3.0905 -1.9858 40 1 3.8520 3.0846 -4.3490 41 1 5.5445 3.2014 -3.8104 42 1 5.2086 5.0813 -1.4899 43 1 6.4028 5.2677 -2.7965 44 1 5.2985 6.6071 -2.4016 45 1 6.6275 4.8262 -4.9634 46 1 7.0466 5.8190 -7.1774 47 1 5.2950 7.1527 -8.2803 48 1 3.1222 7.4890 -7.1715 49 1 2.7006 6.4904 -4.9606 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132768656.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:43 Heat of formation + Delta-G solvation = -95.024512 kcal Electronic energy + Delta-G solvation = -26912.644814 eV Core-core repulsion = 23224.293044 eV Total energy + Delta-G solvation = -3688.351771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.91580 -40.22975 -38.72990 -36.90959 -36.38995 -34.78216 -32.36894 -31.74006 -31.00145 -29.85908 -28.84469 -27.06888 -26.37736 -24.67763 -24.00075 -23.56449 -22.85860 -20.67625 -19.85273 -18.62707 -18.14965 -17.66473 -17.35217 -16.95914 -16.72137 -16.41628 -16.23175 -15.90521 -15.75246 -15.58317 -14.88126 -14.72397 -14.44368 -14.30507 -14.10503 -14.01269 -13.60575 -13.50768 -13.31302 -13.07548 -13.00956 -12.80212 -12.75156 -12.66105 -12.47932 -12.40531 -12.16715 -12.06042 -11.92704 -11.77525 -11.67966 -11.48334 -11.33203 -10.61519 -10.55966 -10.46759 -9.77159 -9.53922 -9.36194 -8.18067 -6.33353 0.50666 0.54760 1.35660 1.40833 1.47932 1.91087 2.33663 2.49720 2.93251 3.01493 3.11081 3.68702 3.73347 3.90886 4.14522 4.19243 4.21831 4.24851 4.28271 4.34282 4.40053 4.45372 4.54979 4.56057 4.57645 4.61549 4.64108 4.70054 4.72408 4.75966 4.87669 5.01170 5.05945 5.08724 5.11412 5.21563 5.22608 5.28077 5.31161 5.41324 5.45247 5.61422 5.64169 5.67187 5.81931 5.91968 6.12366 6.18356 6.38640 6.75885 6.90117 7.32190 7.56904 8.88849 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011581 B = 0.003195 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.141472 B = 8760.305666 C =10360.134210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.420 6.420 3 C 0.044 3.956 4 C 0.104 3.896 5 N -0.598 5.598 6 C 0.272 3.728 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.004 3.996 10 N -0.930 5.930 11 Si 0.968 3.032 12 H -0.258 1.258 13 H -0.279 1.279 14 H -0.277 1.277 15 C 0.488 3.512 16 O -0.604 6.604 17 C -0.125 4.125 18 C -0.087 4.087 19 C -0.043 4.043 20 H 0.099 0.901 21 C -0.145 4.145 22 C -0.085 4.085 23 C -0.133 4.133 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.127 4.127 27 C -0.128 4.128 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.129 0.871 35 H 0.025 0.975 36 H -0.017 1.017 37 H 0.265 0.735 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.044 0.956 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.046 0.954 44 H 0.065 0.935 45 H 0.115 0.885 46 H 0.130 0.870 47 H 0.139 0.861 48 H 0.142 0.858 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.201 24.749 -0.514 25.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.339 6.339 3 C -0.033 4.033 4 C -0.018 4.018 5 N -0.328 5.328 6 C 0.150 3.850 7 C -0.582 4.582 8 H 0.072 0.928 9 C -0.195 4.195 10 N -0.570 5.570 11 Si 0.792 3.208 12 H -0.183 1.183 13 H -0.204 1.204 14 H -0.203 1.203 15 C 0.278 3.722 16 O -0.486 6.486 17 C -0.164 4.164 18 C -0.125 4.125 19 C -0.061 4.061 20 H 0.117 0.883 21 C -0.202 4.202 22 C -0.085 4.085 23 C -0.151 4.151 24 C -0.151 4.151 25 C -0.154 4.154 26 C -0.145 4.145 27 C -0.146 4.146 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.147 0.853 35 H 0.043 0.957 36 H 0.001 0.999 37 H 0.074 0.926 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.133 0.867 46 H 0.148 0.852 47 H 0.157 0.843 48 H 0.160 0.840 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.942 24.113 -1.034 24.856 hybrid contribution 0.694 -1.059 -0.216 1.285 sum -5.248 23.054 -1.250 23.677 Atomic orbital electron populations 1.22840 0.80127 1.02933 1.00843 1.88053 1.21091 1.29267 1.95533 1.23224 0.93463 0.84710 1.01947 1.21905 0.93252 1.00382 0.86298 1.48183 1.64466 1.07747 1.12378 1.18579 0.95376 0.76368 0.94665 1.21759 0.98364 0.92626 1.45419 0.92776 1.25908 1.01961 0.96428 0.95178 1.70079 1.36672 1.01376 1.48908 0.85464 0.78935 0.77116 0.79251 1.18283 1.20426 1.20271 1.21646 0.76548 0.91323 0.82667 1.90632 1.49319 1.76838 1.31858 1.21812 1.05668 0.88118 1.00781 1.21273 1.01147 0.94350 0.95712 1.20164 1.01684 0.92370 0.91897 0.88269 1.21910 0.98058 1.01383 0.98828 1.20076 0.94051 0.97615 0.96785 1.21202 0.97514 1.00234 0.96121 1.21405 1.00256 0.98063 0.95379 1.21438 0.93878 0.99292 1.00785 1.21465 0.97674 0.99942 0.95390 1.21367 0.99364 0.97891 0.95946 0.91811 0.93772 0.90399 0.88841 0.92625 0.90879 0.85330 0.95674 0.99901 0.92581 0.86321 0.86356 0.93697 0.93477 0.90542 0.93446 0.91599 0.86718 0.85162 0.84350 0.83992 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.42 -14.36 9.53 -148.98 -1.42 -15.78 16 3 C 0.04 1.11 6.28 71.98 0.45 1.56 16 4 C 0.10 3.17 5.62 86.38 0.49 3.65 16 5 N -0.60 -26.04 2.42 -826.16 -2.00 -28.04 16 6 C 0.27 15.60 4.98 85.63 0.43 16.02 16 7 C -0.54 -32.75 9.39 25.60 0.24 -32.51 16 8 H 0.05 3.18 7.81 -2.91 -0.02 3.15 16 9 C 0.00 0.22 5.46 84.65 0.46 0.69 16 10 N -0.93 -59.14 13.29 21.45 0.28 -58.86 16 11 Si 0.97 46.53 29.54 68.60 2.03 48.56 16 12 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 14 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 15 C 0.49 20.62 7.67 87.66 0.67 21.29 16 16 O -0.60 -32.80 15.56 -3.03 -0.05 -32.85 16 17 C -0.12 -3.24 4.01 29.85 0.12 -3.12 16 18 C -0.09 -2.34 3.71 30.60 0.11 -2.23 16 19 C -0.04 -0.81 2.56 -11.54 -0.03 -0.84 16 20 H 0.10 1.46 7.88 -2.39 -0.02 1.44 16 21 C -0.14 -2.33 8.76 71.98 0.63 -1.70 16 22 C -0.09 -1.81 4.78 -19.87 -0.09 -1.91 16 23 C -0.13 -3.05 8.76 22.27 0.20 -2.86 16 24 C -0.13 -2.74 10.05 22.27 0.22 -2.51 16 25 C -0.14 -2.44 10.05 22.27 0.22 -2.22 16 26 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 27 C -0.13 -2.36 9.67 22.27 0.22 -2.15 16 28 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.06 1.28 7.30 -2.39 -0.02 1.27 16 33 H 0.07 2.49 8.07 -2.39 -0.02 2.47 16 34 H 0.13 2.62 6.44 -2.39 -0.02 2.60 16 35 H 0.03 1.52 7.12 -2.39 -0.02 1.50 16 36 H -0.02 -1.15 7.42 -2.39 -0.02 -1.17 16 37 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 38 H 0.12 2.41 5.83 -2.39 -0.01 2.40 16 39 H 0.12 2.28 7.26 -2.39 -0.02 2.26 16 40 H 0.04 1.42 8.10 -2.39 -0.02 1.40 16 41 H 0.05 1.49 7.54 -2.39 -0.02 1.48 16 42 H 0.08 1.01 6.57 -2.39 -0.02 0.99 16 43 H 0.05 0.87 7.37 -2.39 -0.02 0.85 16 44 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.11 2.69 7.16 -2.91 -0.02 2.67 16 46 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 47 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 48 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 49 H 0.14 1.93 7.95 -2.91 -0.02 1.90 16 Total: -1.00 -84.60 397.47 5.56 -79.04 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.91 Total: 16.76 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 5.81 Total: -8.82 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -1.71 Total: -86.90 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -1.47 Total: -48.63 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -84.60 5.56 -79.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132768656.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.984 kcal (2) G-P(sol) polarization free energy of solvation -84.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds